Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47112 * 2 1 4 4 C 1.34776 * 119.99689 * 110.90984 * 3 2 1 5 5 O 1.21605 * 119.99736 * 178.63226 * 4 3 2 6 6 C 1.47428 * 120.00161 * 358.90911 * 4 3 2 7 7 C 1.38747 * 120.33422 * 326.41365 * 6 4 3 8 8 C 1.38864 * 120.72516 * 179.97438 * 7 6 4 9 9 C 1.36349 * 121.06420 * 0.02574 * 8 7 6 10 10 C 1.50701 * 119.96354 * 179.97438 * 9 8 7 11 11 C 1.40443 * 120.08118 * 0.02562 * 9 8 7 12 12 C 1.40806 * 121.26912 * 180.02562 * 11 9 8 13 13 C 1.36637 * 118.15706 * 179.17403 * 12 11 9 14 14 C 1.39239 * 119.90332 * 0.77069 * 13 12 11 15 15 N 1.31227 * 121.69435 * 359.46634 * 14 13 12 16 16 C 1.33353 * 121.35676 * 359.97438 * 15 14 13 17 17 C 1.46497 * 120.00036 * 290.91073 * 3 2 1 18 18 C 1.53949 * 113.74220 * 223.52517 * 17 3 2 19 19 N 1.47813 * 86.03850 * 222.08711 * 18 17 3 20 20 C 1.36938 * 134.45645 * 204.64512 * 19 18 17 21 21 H 1.07994 * 119.99876 * 184.76408 * 20 19 18 22 22 C 1.38813 * 119.99930 * 4.76699 * 20 19 18 23 23 N 1.31625 * 119.99770 * 5.14830 * 22 20 19 24 24 Si 1.86791 * 119.99912 * 185.14376 * 22 20 19 25 25 H 1.48495 * 109.47372 * 95.00193 * 24 22 20 26 26 H 1.48506 * 109.47196 * 215.00141 * 24 22 20 27 27 H 1.48499 * 109.47159 * 334.99519 * 24 22 20 28 28 C 1.47580 * 91.05199 * 24.54849 * 19 18 17 29 29 H 1.08995 * 109.47432 * 299.99729 * 1 2 3 30 30 H 1.08997 * 109.47379 * 59.99872 * 1 2 3 31 31 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47011 * 240.00339 * 2 1 3 33 33 H 1.08997 * 109.47379 * 120.00128 * 2 1 3 34 34 H 1.07995 * 119.63790 * 359.97438 * 7 6 4 35 35 H 1.08009 * 119.47096 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46745 * 90.00063 * 10 9 8 37 37 H 1.08998 * 109.47348 * 209.99828 * 10 9 8 38 38 H 1.08999 * 109.46839 * 329.99990 * 10 9 8 39 39 H 1.08008 * 120.91781 * 359.95607 * 12 11 9 40 40 H 1.07998 * 120.04980 * 180.23024 * 13 12 11 41 41 H 1.07998 * 119.14662 * 179.47765 * 14 13 12 42 42 H 1.08998 * 112.94491 * 355.12206 * 17 3 2 43 43 H 1.09002 * 113.76818 * 336.35349 * 18 17 3 44 44 H 1.09000 * 113.76527 * 107.74572 * 18 17 3 45 45 H 0.96999 * 119.99601 * 179.97438 * 23 22 20 46 46 H 1.08996 * 113.77352 * 221.15451 * 28 19 18 47 47 H 1.09006 * 113.76898 * 89.74852 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6356 1.8776 1.0904 5 8 3.0631 3.0161 1.0815 6 6 2.7981 1.0385 2.2916 7 6 1.8294 0.1048 2.6304 8 6 1.9744 -0.6901 3.7597 9 6 3.0688 -0.5756 4.5649 10 6 3.2006 -1.4506 5.7848 11 6 4.0730 0.3575 4.2594 12 6 5.2137 0.4964 5.0731 13 6 6.1593 1.4122 4.7070 14 6 5.9701 2.1869 3.5656 15 7 4.9026 2.0571 2.8134 16 6 3.9483 1.1740 3.1095 17 6 1.8355 2.2228 -1.1851 18 6 3.0798 3.0501 -1.5557 19 7 2.1389 4.1617 -1.8087 20 6 2.1727 5.2887 -2.5859 21 1 1.3634 6.0022 -2.5378 22 6 3.2471 5.5140 -3.4355 23 7 4.1828 4.5981 -3.5702 24 14 3.3648 7.1167 -4.3876 25 1 4.2132 8.0771 -3.6373 26 1 3.9689 6.8582 -5.7193 27 1 2.0058 7.6890 -4.5634 28 6 1.1482 3.5683 -0.8899 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.9529 -0.0049 2.0091 35 1 1.2080 -1.4108 4.0042 36 1 3.7198 -2.3710 5.5173 37 1 3.7684 -0.9228 6.5510 38 1 2.2090 -1.6910 6.1683 39 1 5.3437 -0.1132 5.9552 40 1 7.0480 1.5413 5.3069 41 1 6.7213 2.9130 3.2922 42 1 1.4007 1.6832 -2.0265 43 1 3.7546 3.2277 -0.7183 44 1 3.5930 2.6953 -2.4495 45 1 4.9334 4.7554 -4.1642 46 1 0.1221 3.6265 -1.2530 47 1 1.2544 3.8984 0.1435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950911940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 114.915781 kcal Electronic energy + Delta-G solvation = -29821.888858 eV Core-core repulsion = 25973.104209 eV Total energy + Delta-G solvation = -3848.784649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25250 -39.73856 -37.52749 -36.65650 -35.43349 -33.99291 -31.97091 -31.22951 -30.75381 -30.06628 -28.06816 -26.86709 -24.53399 -24.42337 -24.02019 -23.29821 -23.11816 -21.45790 -20.10847 -18.77492 -18.20946 -17.18176 -16.90757 -16.51242 -15.81725 -15.62046 -15.18875 -14.73691 -14.65323 -14.33652 -14.24364 -14.04001 -13.66720 -13.54360 -13.48519 -13.39611 -12.96795 -12.67434 -12.38197 -12.35100 -12.20866 -11.95081 -11.69132 -11.53036 -11.33903 -11.28198 -11.14094 -10.85358 -10.74325 -10.52874 -10.44995 -9.94812 -9.81733 -9.52029 -9.35075 -8.98599 -8.87384 -8.48439 -8.20413 -7.90847 -6.60747 -5.57448 -2.89216 0.08286 0.69336 1.70336 2.64737 3.29346 3.45516 3.50506 3.55620 3.56702 4.08019 4.21008 4.31734 4.49707 4.60041 4.62126 4.63889 4.76617 4.86914 4.96484 5.06741 5.17602 5.21176 5.21457 5.24364 5.42623 5.45501 5.46530 5.58600 5.67865 5.74642 5.76278 5.79345 5.81967 5.87485 5.90120 6.03613 6.05768 6.17338 6.24343 6.35949 6.49834 6.66749 6.75586 6.78663 7.11361 7.50520 7.76668 7.82023 7.93616 8.03189 8.17709 8.80032 9.22417 9.88981 10.81742 11.58142 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.003325 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.276042 B = 8418.098974 C = 9865.257518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 N -0.599 5.599 4 C 0.549 3.451 5 O -0.477 6.477 6 C -0.100 4.100 7 C -0.084 4.084 8 C -0.129 4.129 9 C -0.049 4.049 10 C -0.119 4.119 11 C -0.108 4.108 12 C -0.064 4.064 13 C -0.175 4.175 14 C 0.133 3.867 15 N -0.440 5.440 16 C 0.164 3.836 17 C 0.095 3.905 18 C 0.145 3.855 19 N -0.603 5.603 20 C -0.213 4.213 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.917 5.917 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.114 3.886 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.251 0.749 46 H 0.035 0.965 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -18.562 20.065 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.046 4.046 3 N -0.334 5.334 4 C 0.336 3.664 5 O -0.350 6.350 6 C -0.104 4.104 7 C -0.104 4.104 8 C -0.147 4.147 9 C -0.050 4.050 10 C -0.176 4.176 11 C -0.110 4.110 12 C -0.090 4.090 13 C -0.195 4.195 14 C -0.040 4.040 15 N -0.146 5.146 16 C 0.041 3.959 17 C -0.009 4.009 18 C 0.020 3.980 19 N -0.329 5.329 20 C -0.341 4.341 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.565 5.565 24 Si 0.741 3.259 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.318 -17.200 18.987 25.725 hybrid contribution 0.254 0.338 0.271 0.502 sum -2.064 -16.862 19.258 25.680 Atomic orbital electron populations 1.22239 0.95924 1.01951 1.03051 1.22165 0.94487 0.84189 1.03794 1.48016 1.57987 1.12586 1.14771 1.17866 0.79127 0.87105 0.82338 1.90890 1.45411 1.17582 1.81114 1.20071 0.94708 0.98420 0.97180 1.21979 0.99181 0.93019 0.96223 1.20704 0.98226 1.00700 0.95043 1.19823 0.93379 0.95170 0.96643 1.20890 1.03203 0.98737 0.94758 1.18649 0.96666 0.98821 0.96879 1.21455 0.92249 0.96964 0.98306 1.21959 1.00631 0.97862 0.99037 1.23181 0.94370 0.96269 0.90153 1.68263 1.00602 1.16131 1.29604 1.18608 0.93304 0.92129 0.91822 1.24001 1.01999 0.89475 0.85376 1.22931 0.91618 0.84343 0.99154 1.45617 1.14881 1.25193 1.47226 1.18981 1.04747 0.96410 1.13993 0.90516 1.24760 0.97489 0.98400 1.00013 1.69848 1.12816 1.33084 1.40730 0.86117 0.77483 0.83227 0.79071 1.21780 1.21832 1.20684 1.22900 0.93248 0.90195 0.94983 0.92240 0.91436 0.91639 0.91121 0.88749 0.82989 0.85031 0.90524 0.91144 0.90860 0.84341 0.84526 0.82234 0.88007 0.92184 0.91039 0.93904 0.94696 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.26 37.15 0.34 -1.36 16 2 C 0.08 0.93 5.62 -4.04 -0.02 0.91 16 3 N -0.60 -10.41 2.81 -169.16 -0.48 -10.88 16 4 C 0.55 10.67 6.71 -12.52 -0.08 10.59 16 5 O -0.48 -11.58 11.61 5.27 0.06 -11.52 16 6 C -0.10 -1.58 5.44 -104.62 -0.57 -2.15 16 7 C -0.08 -0.96 7.33 -39.16 -0.29 -1.25 16 8 C -0.13 -1.17 9.57 -40.03 -0.38 -1.55 16 9 C -0.05 -0.46 5.89 -104.47 -0.62 -1.08 16 10 C -0.12 -0.68 9.53 36.01 0.34 -0.33 16 11 C -0.11 -1.31 5.74 -106.82 -0.61 -1.92 16 12 C -0.06 -0.61 9.36 -39.19 -0.37 -0.98 16 13 C -0.17 -1.71 10.03 -39.79 -0.40 -2.11 16 14 C 0.13 1.76 11.15 -17.44 -0.19 1.57 16 15 N -0.44 -7.77 8.95 -10.76 -0.10 -7.87 16 16 C 0.16 2.63 6.58 -84.58 -0.56 2.07 16 17 C 0.09 1.98 4.18 -70.13 -0.29 1.68 16 18 C 0.15 3.88 6.99 -2.84 -0.02 3.86 16 19 N -0.60 -17.18 3.70 -177.85 -0.66 -17.84 16 20 C -0.21 -6.50 10.69 -15.06 -0.16 -6.66 16 21 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -29.06 11.29 55.49 0.63 -28.43 16 24 Si 0.91 23.57 29.56 -169.99 -5.02 18.55 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 28 C 0.11 2.67 8.27 -2.96 -0.02 2.65 16 29 H 0.06 0.58 6.98 -51.93 -0.36 0.22 16 30 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.01 3.99 -51.93 -0.21 0.81 16 34 H 0.15 1.47 3.66 -52.49 -0.19 1.28 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.34 6.42 -51.93 -0.33 0.01 16 38 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.14 0.84 6.42 -52.48 -0.34 0.51 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.10 1.97 8.07 -51.93 -0.42 1.55 16 43 H 0.06 1.76 5.54 -51.93 -0.29 1.48 16 44 H 0.07 2.07 6.87 -51.93 -0.36 1.72 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.13 6.46 -51.93 -0.34 0.80 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -39.00 370.35 -10.15 -49.14 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.17 Total: -0.28 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -4.00 Total: 3.54 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.60 Total: -65.01 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.00 -10.15 -49.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950911940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.060 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds