Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46580 * 2 1 4 4 C 1.34783 * 120.00235 * 250.03143 * 3 2 1 5 5 O 1.21564 * 120.00276 * 183.55323 * 4 3 2 6 6 C 1.47768 * 119.99636 * 3.54924 * 4 3 2 7 7 C 1.40626 * 119.80384 * 28.45803 * 6 4 3 8 8 C 1.35699 * 120.92187 * 179.97438 * 7 6 4 9 9 C 1.40759 * 120.11205 * 0.02562 * 8 7 6 10 10 N 1.33648 * 120.82469 * 179.97438 * 9 8 7 11 11 C 1.31119 * 121.39019 * 180.02562 * 10 9 8 12 12 C 1.50702 * 119.11704 * 179.97438 * 11 10 9 13 13 C 1.39315 * 121.76926 * 359.95776 * 11 10 9 14 14 C 1.36578 * 119.90754 * 0.02562 * 13 11 10 15 15 C 1.40893 * 118.15836 * 359.97438 * 14 13 11 16 16 C 1.38545 * 119.80216 * 208.17965 * 6 4 3 17 17 C 1.46497 * 120.00231 * 69.76223 * 3 2 1 18 18 C 1.53949 * 113.74186 * 223.11051 * 17 3 2 19 19 N 1.47817 * 86.03604 * 222.07984 * 18 17 3 20 20 C 1.36938 * 134.45774 * 204.64385 * 19 18 17 21 21 H 1.07998 * 119.99984 * 174.59446 * 20 19 18 22 22 C 1.38812 * 119.99576 * 354.59364 * 20 19 18 23 23 N 1.31617 * 120.00294 * 5.01147 * 22 20 19 24 24 Si 1.86803 * 119.99484 * 185.01126 * 22 20 19 25 25 H 1.48502 * 109.47381 * 94.99930 * 24 22 20 26 26 H 1.48501 * 109.47149 * 214.99790 * 24 22 20 27 27 H 1.48499 * 109.47126 * 334.99867 * 24 22 20 28 28 C 1.47580 * 91.05141 * 24.54762 * 19 18 17 29 29 H 1.08994 * 109.47223 * 299.99705 * 1 2 3 30 30 H 1.08998 * 109.47299 * 60.00207 * 1 2 3 31 31 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46932 * 240.00321 * 2 1 3 33 33 H 1.08992 * 109.47269 * 120.00248 * 2 1 3 34 34 H 1.08006 * 119.54292 * 0.02562 * 7 6 4 35 35 H 1.08005 * 119.94605 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.46900 * 269.97741 * 12 11 10 37 37 H 1.08996 * 109.47263 * 29.96932 * 12 11 10 38 38 H 1.08994 * 109.47544 * 149.98172 * 12 11 10 39 39 H 1.08001 * 120.04615 * 180.02562 * 13 11 10 40 40 H 1.08000 * 120.92369 * 180.02562 * 14 13 11 41 41 H 1.08002 * 120.30528 * 0.03119 * 16 6 4 42 42 H 1.09005 * 112.93950 * 354.69407 * 17 3 2 43 43 H 1.08997 * 113.76607 * 336.33883 * 18 17 3 44 44 H 1.08997 * 113.77313 * 107.73895 * 18 17 3 45 45 H 0.97000 * 119.99625 * 179.97438 * 23 22 20 46 46 H 1.09004 * 113.77321 * 221.15490 * 28 19 18 47 47 H 1.09003 * 113.77106 * 89.75120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.6186 1.8839 -1.0971 5 8 3.0813 3.0078 -1.0757 6 6 2.7145 1.0685 -2.3257 7 6 1.7386 0.0925 -2.5948 8 6 1.8042 -0.6685 -3.7164 9 6 2.8590 -0.4888 -4.6310 10 7 2.9378 -1.2308 -5.7398 11 6 3.9157 -1.0731 -6.5990 12 6 3.9548 -1.9382 -7.8324 13 6 4.9193 -0.1271 -6.4025 14 6 4.8999 0.6653 -5.2903 15 6 3.8476 0.4929 -4.3694 16 6 3.7623 1.2743 -3.2086 17 6 1.8485 2.2182 1.1904 18 6 1.3895 3.6541 0.8782 19 7 2.3683 4.0798 1.9008 20 6 2.4911 5.1749 2.7137 21 1 3.2743 5.2109 3.4565 22 6 1.6091 6.2387 2.5829 23 7 0.5958 6.1545 1.7471 24 14 1.8603 7.7898 3.5931 25 1 2.6213 8.7834 2.7938 26 1 0.5395 8.3591 3.9628 27 1 2.6197 7.4600 4.8258 28 6 3.1582 2.8501 1.6957 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.9250 -0.0529 -1.8996 35 1 1.0459 -1.4134 -3.9077 36 1 4.5228 -2.8446 -7.6226 37 1 2.9383 -2.2053 -8.1212 38 1 4.4316 -1.3907 -8.6453 39 1 5.7117 -0.0205 -7.1286 40 1 5.6694 1.4042 -5.1217 41 1 4.5088 2.0270 -3.0024 42 1 1.2657 1.7314 1.9724 43 1 1.6364 3.9846 -0.1307 44 1 0.3530 3.8530 1.1507 45 1 -0.0208 6.8978 1.6561 46 1 3.5313 2.4083 2.6197 47 1 3.9257 2.9440 0.9273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956990594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = 88.268701 kcal Electronic energy + Delta-G solvation = -29061.937682 eV Core-core repulsion = 25211.997528 eV Total energy + Delta-G solvation = -3849.940153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24736 -41.36536 -39.07289 -37.89804 -36.80284 -34.55218 -34.22568 -32.93120 -31.65601 -30.92518 -29.72907 -28.74685 -26.60509 -25.71281 -25.00485 -24.39322 -23.59907 -23.11773 -21.92404 -20.48866 -19.31208 -18.74880 -18.26053 -17.60412 -17.09822 -16.95450 -16.74089 -16.15145 -15.94889 -15.71635 -15.63244 -15.50971 -14.99893 -14.80272 -14.44131 -14.10022 -13.94745 -13.88277 -13.82339 -13.67133 -13.38015 -13.15954 -12.99362 -12.97242 -12.87312 -12.65938 -12.55374 -12.47993 -12.22687 -11.96115 -11.93128 -11.76796 -11.50146 -11.48083 -11.03971 -10.57260 -10.51160 -9.70172 -9.56487 -9.28702 -8.89553 -7.93286 -5.25938 -0.79782 -0.36323 0.85715 1.39405 1.41113 1.45339 1.53884 1.90607 2.16171 2.47463 3.00527 3.16252 3.24935 3.40101 3.50094 3.54793 3.66708 3.82267 3.84609 3.94315 3.99927 4.07520 4.22117 4.30553 4.36231 4.39385 4.54687 4.57099 4.67567 4.77866 4.83154 4.84917 4.86369 4.90870 4.95275 4.96700 4.99145 5.03002 5.18538 5.20621 5.21443 5.24652 5.29443 5.43177 5.47999 5.52536 5.75412 5.85180 5.90248 6.45332 6.88849 6.89065 7.18254 7.57740 8.55910 9.24797 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.002539 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.961150 B =11024.649344 C =11833.726447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 N -0.591 5.591 4 C 0.544 3.456 5 O -0.564 6.564 6 C -0.142 4.142 7 C -0.092 4.092 8 C -0.100 4.100 9 C 0.130 3.870 10 N -0.504 5.504 11 C 0.158 3.842 12 C -0.105 4.105 13 C -0.171 4.171 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.035 4.035 17 C 0.127 3.873 18 C 0.158 3.842 19 N -0.634 5.634 20 C -0.235 4.235 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.983 3.017 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.262 1.262 28 C 0.111 3.889 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.024 0.976 44 H 0.034 0.966 45 H 0.248 0.752 46 H 0.059 0.941 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -23.325 -17.303 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.051 4.051 3 N -0.322 5.322 4 C 0.334 3.666 5 O -0.444 6.444 6 C -0.145 4.145 7 C -0.112 4.112 8 C -0.118 4.118 9 C 0.009 3.991 10 N -0.214 5.214 11 C 0.006 3.994 12 C -0.162 4.162 13 C -0.190 4.190 14 C -0.078 4.078 15 C -0.135 4.135 16 C -0.055 4.055 17 C 0.022 3.978 18 C 0.032 3.968 19 N -0.360 5.360 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.264 4.264 23 N -0.602 5.602 24 Si 0.810 3.190 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.186 1.186 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.192 0.808 35 H 0.179 0.821 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.193 0.807 40 H 0.179 0.821 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.774 -23.079 -17.176 29.162 hybrid contribution 0.653 2.292 0.774 2.506 sum 5.427 -20.786 -16.402 27.029 Atomic orbital electron populations 1.22280 0.94373 1.04318 1.02432 1.22682 0.95772 0.80757 1.05936 1.47988 1.57484 1.14259 1.12479 1.18793 0.77932 0.85986 0.83868 1.90847 1.48318 1.21016 1.84184 1.19894 0.99098 0.99755 0.95720 1.21855 0.98809 0.92794 0.97700 1.20915 0.97694 1.01079 0.92160 1.19260 0.94493 0.92222 0.93124 1.67966 1.24928 1.25605 1.02934 1.22278 0.88604 0.93393 0.95126 1.20919 1.04392 0.98985 0.91936 1.22121 1.01079 0.96526 0.99279 1.21899 0.95879 0.97788 0.92283 1.18931 0.98491 0.99117 0.96952 1.21430 0.96689 0.96062 0.91333 1.23415 0.97327 0.89901 0.87110 1.22456 0.93416 0.89210 0.91689 1.46089 1.27096 1.20600 1.42237 1.19439 1.12306 0.94078 1.10518 0.89714 1.25750 0.97886 1.01413 1.01308 1.70059 1.16690 1.32008 1.41434 0.85002 0.76839 0.79002 0.78159 1.21918 1.21606 1.18610 1.23000 0.94734 0.86195 0.97536 0.92612 0.92514 0.87722 0.86403 0.88835 0.80770 0.82074 0.88632 0.90595 0.87943 0.80747 0.82123 0.84895 0.85172 0.95843 0.94744 0.94302 0.92302 0.94821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.15 71.98 0.66 -2.42 16 2 C 0.07 1.40 5.61 86.38 0.48 1.88 16 3 N -0.59 -18.95 2.80 -806.96 -2.26 -21.21 16 4 C 0.54 19.98 6.88 86.76 0.60 20.57 16 5 O -0.56 -26.90 12.35 -3.92 -0.05 -26.94 16 6 C -0.14 -4.08 5.50 -20.10 -0.11 -4.19 16 7 C -0.09 -2.03 7.29 22.26 0.16 -1.87 16 8 C -0.10 -2.06 9.95 22.30 0.22 -1.84 16 9 C 0.13 3.07 6.61 40.36 0.27 3.34 16 10 N -0.50 -10.98 10.23 -176.58 -1.81 -12.79 16 11 C 0.16 2.55 6.78 42.92 0.29 2.84 16 12 C -0.11 -0.87 10.14 71.24 0.72 -0.15 16 13 C -0.17 -2.31 9.64 22.14 0.21 -2.10 16 14 C -0.05 -0.93 9.89 22.53 0.22 -0.71 16 15 C -0.13 -3.14 5.74 -21.28 -0.12 -3.27 16 16 C -0.04 -0.97 9.34 22.82 0.21 -0.76 16 17 C 0.13 5.04 4.26 46.75 0.20 5.24 16 18 C 0.16 8.48 6.72 86.44 0.58 9.07 16 19 N -0.63 -36.15 3.70 -716.62 -2.65 -38.81 16 20 C -0.24 -14.29 10.70 84.03 0.90 -13.39 16 21 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 22 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.95 -61.78 11.47 21.65 0.25 -61.54 16 24 Si 0.98 48.50 29.56 68.60 2.03 50.53 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 28 C 0.11 5.12 8.27 86.49 0.72 5.84 16 29 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 30 H 0.06 1.08 6.96 -2.39 -0.02 1.07 16 31 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.12 2.05 3.96 -2.41 -0.01 2.04 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.18 3.14 3.04 -2.91 -0.01 3.14 16 35 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 39 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.13 3.75 7.87 -2.91 -0.02 3.73 16 42 H 0.13 4.52 7.75 -2.38 -0.02 4.51 16 43 H 0.02 1.42 5.67 -2.39 -0.01 1.41 16 44 H 0.03 2.00 7.31 -2.39 -0.02 1.98 16 45 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.03 1.68 6.34 -2.39 -0.02 1.66 16 Total: -1.00 -85.68 375.04 3.19 -82.49 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.00 Total: 14.04 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.68 Total: 14.22 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -6.47 Total: -134.34 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -85.68 3.19 -82.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956990594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.758 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds