Wall clock time and date at job start Sat Apr 11 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47262 * 2 1 4 4 C 1.34776 * 120.00051 * 85.09839 * 3 2 1 5 5 O 1.21632 * 120.00224 * 185.51296 * 4 3 2 6 6 C 1.47132 * 119.99814 * 5.51707 * 4 3 2 7 7 C 1.36620 * 126.97811 * 343.43220 * 6 4 3 8 8 N 1.34703 * 108.68715 * 179.73647 * 7 6 4 9 9 H 0.96998 * 124.72881 * 180.02562 * 8 7 6 10 10 C 1.36221 * 110.54728 * 359.97438 * 8 7 6 11 11 C 1.35749 * 108.67729 * 359.97438 * 10 8 7 12 12 C 1.48286 * 126.97936 * 179.97438 * 11 10 8 13 13 C 1.39392 * 120.12267 * 129.72986 * 12 11 10 14 14 C 1.38004 * 119.86475 * 179.67508 * 13 12 11 15 15 C 1.38332 * 120.13036 * 0.62351 * 14 13 12 16 16 C 1.38328 * 120.25212 * 359.66729 * 15 14 13 17 17 C 1.38006 * 120.12869 * 0.02562 * 16 15 14 18 18 C 1.46500 * 119.99794 * 265.10237 * 3 2 1 19 19 C 1.53948 * 113.73801 * 222.34955 * 18 3 2 20 20 N 1.47807 * 86.03871 * 222.08453 * 19 18 3 21 21 C 1.36941 * 134.46067 * 204.64780 * 20 19 18 22 22 H 1.07998 * 119.99921 * 179.86635 * 21 20 19 23 23 C 1.38810 * 119.99830 * 359.86273 * 21 20 19 24 24 N 1.31616 * 119.99735 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00107 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46847 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47001 * 119.99735 * 25 23 21 28 28 H 1.48492 * 109.47393 * 240.00210 * 25 23 21 29 29 C 1.47579 * 91.05028 * 24.54854 * 20 19 18 30 30 H 1.09006 * 109.46869 * 300.00093 * 1 2 3 31 31 H 1.08995 * 109.47274 * 59.99674 * 1 2 3 32 32 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46869 * 239.99907 * 2 1 3 34 34 H 1.09004 * 109.47246 * 120.00086 * 2 1 3 35 35 H 1.07997 * 125.65429 * 359.71630 * 7 6 4 36 36 H 1.08001 * 125.66246 * 179.97438 * 10 8 7 37 37 H 1.07996 * 120.06579 * 359.97438 * 13 12 11 38 38 H 1.08001 * 119.93496 * 180.33649 * 14 13 12 39 39 H 1.07999 * 119.87694 * 179.70395 * 15 14 13 40 40 H 1.07997 * 119.93716 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.06404 * 180.02562 * 17 16 15 42 42 H 1.09001 * 112.94727 * 353.93623 * 18 3 2 43 43 H 1.09001 * 113.77166 * 336.34947 * 19 18 3 44 44 H 1.08998 * 113.77061 * 107.74920 * 19 18 3 45 45 H 0.97009 * 119.99611 * 179.97438 * 24 23 21 46 46 H 1.09005 * 113.77562 * 221.15506 * 29 20 19 47 47 H 1.09001 * 113.76824 * 89.75628 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1490 2.0498 1.1629 5 8 2.4578 3.2262 1.1567 6 6 1.9181 1.3565 2.4400 7 6 1.2765 0.1644 2.6236 8 7 1.2795 -0.1293 3.9382 9 1 0.8852 -0.9255 4.3275 10 6 1.9144 0.8470 4.6448 11 6 2.3391 1.8033 3.7800 12 6 3.0752 3.0460 4.1155 13 6 4.2410 3.3763 3.4263 14 6 4.9182 4.5375 3.7383 15 6 4.4493 5.3666 4.7415 16 6 3.2963 5.0409 5.4328 17 6 2.6073 3.8854 5.1252 18 6 2.3647 2.0356 -1.2641 19 6 3.6617 2.8624 -1.1990 20 7 2.9321 3.8788 -1.9860 21 6 3.3072 4.8841 -2.8368 22 1 2.5568 5.5065 -3.3014 23 6 4.6520 5.1033 -3.1019 24 7 5.5665 4.3445 -2.5360 25 14 5.1638 6.4742 -4.2630 26 1 3.9545 7.1759 -4.7638 27 1 6.0306 7.4384 -3.5389 28 1 5.9128 5.8987 -5.4087 29 6 1.6376 3.3738 -1.4889 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.8391 -0.4417 1.8441 36 1 2.0563 0.8585 5.7154 37 1 4.6108 2.7271 2.6465 38 1 5.8186 4.7972 3.2014 39 1 4.9851 6.2720 4.9855 40 1 2.9345 5.6920 6.2148 41 1 1.7069 3.6322 5.6653 42 1 2.3167 1.3611 -2.1190 43 1 3.9236 3.1904 -0.1931 44 1 4.4982 2.4100 -1.7316 45 1 6.5063 4.4975 -2.7216 46 1 0.8609 3.3289 -2.2524 47 1 1.3035 3.8524 -0.5683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957390198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:33 Heat of formation + Delta-G solvation = 106.683240 kcal Electronic energy + Delta-G solvation = -30024.335518 eV Core-core repulsion = 26175.193879 eV Total energy + Delta-G solvation = -3849.141639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34136 -40.90055 -39.63134 -38.30995 -36.73433 -34.22211 -33.37644 -31.78338 -31.55159 -30.92856 -29.23074 -29.07728 -26.54063 -25.56339 -24.44090 -23.79063 -23.42946 -22.71477 -21.82568 -20.49562 -19.82182 -18.74339 -18.59165 -17.41623 -17.35955 -17.03413 -16.57620 -16.19629 -15.92663 -15.70258 -15.62766 -15.42417 -14.90711 -14.75330 -14.26917 -14.22050 -14.05749 -14.02073 -13.85135 -13.57802 -13.40221 -13.29297 -12.96694 -12.81068 -12.78673 -12.68970 -12.43760 -12.02791 -12.01187 -11.93793 -11.88940 -11.68536 -11.45598 -10.98389 -10.45190 -10.11286 -9.74768 -9.44409 -9.29422 -8.88056 -8.85408 -7.89915 -5.23168 0.34586 0.59422 0.93415 1.40549 1.44312 1.54246 1.56384 2.08616 2.45919 2.52140 2.63477 3.01621 3.29180 3.54188 3.83725 3.91026 3.97098 4.05426 4.11698 4.15667 4.21666 4.30642 4.32184 4.43802 4.48682 4.58837 4.63673 4.69617 4.73265 4.74977 4.87881 4.91932 4.99976 5.07665 5.09048 5.20414 5.22654 5.25031 5.37248 5.47049 5.51011 5.52237 5.67601 5.68376 5.85253 5.91635 5.98273 6.00738 6.20193 6.72098 6.76848 6.91330 7.57215 7.60254 8.59405 9.27736 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.004324 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.539942 B = 6474.414434 C = 8762.444807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 N -0.601 5.601 4 C 0.566 3.434 5 O -0.565 6.565 6 C -0.247 4.247 7 C 0.045 3.955 8 N -0.526 5.526 9 H 0.442 0.558 10 C 0.022 3.978 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.118 4.118 18 C 0.130 3.870 19 C 0.157 3.843 20 N -0.632 5.632 21 C -0.234 4.234 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.983 3.017 26 H -0.264 1.264 27 H -0.295 1.295 28 H -0.284 1.284 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.227 0.773 36 H 0.205 0.795 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.126 0.874 43 H 0.022 0.978 44 H 0.032 0.968 45 H 0.247 0.753 46 H 0.053 0.947 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -16.600 18.620 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.046 4.046 3 N -0.333 5.333 4 C 0.358 3.642 5 O -0.445 6.445 6 C -0.257 4.257 7 C -0.090 4.090 8 N -0.121 5.121 9 H 0.284 0.716 10 C -0.108 4.108 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.119 4.119 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.136 4.136 18 C 0.025 3.975 19 C 0.031 3.969 20 N -0.358 5.358 21 C -0.363 4.363 22 H 0.099 0.901 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.810 3.190 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.210 1.210 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.242 0.758 36 H 0.222 0.778 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.288 -15.938 18.506 27.340 hybrid contribution 0.952 1.123 -0.961 1.758 sum -11.336 -14.816 17.545 25.609 Atomic orbital electron populations 1.22383 0.94328 1.04277 1.02576 1.22460 0.95594 0.81166 1.05375 1.47924 1.65475 1.15085 1.04847 1.18032 0.76527 0.85890 0.83770 1.90844 1.48385 1.17681 1.87561 1.20437 1.13514 0.99662 0.92057 1.23419 1.01929 0.96320 0.87362 1.41514 1.44113 1.20577 1.05935 0.71601 1.22133 1.00955 0.89389 0.98346 1.19295 1.05650 0.96421 0.91962 1.18256 0.93066 0.94291 0.95631 1.20983 0.95995 0.97149 0.97809 1.21198 1.00722 0.95389 0.98697 1.21376 0.97799 0.99747 0.96229 1.21375 0.94997 0.97260 1.00487 1.21436 1.00296 0.94452 0.97397 1.23310 0.95484 0.92557 0.86171 1.22473 0.93739 0.87376 0.93290 1.46118 1.03310 1.37053 1.49342 1.19477 0.92017 1.07823 1.16949 0.90075 1.25693 0.95424 1.02351 1.02739 1.70079 0.99667 1.42346 1.48264 0.84953 0.78046 0.78195 0.77795 1.18806 1.22264 1.21039 1.22949 0.89627 0.92568 0.95969 0.92334 0.92917 0.87469 0.88764 0.87397 0.75753 0.77790 0.89968 0.87393 0.84473 0.82989 0.83549 0.85621 0.96016 0.94969 0.94413 0.92845 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.87 71.98 0.64 -1.89 16 2 C 0.08 1.45 5.66 86.38 0.49 1.94 16 3 N -0.60 -20.06 2.74 -807.69 -2.21 -22.28 16 4 C 0.57 22.02 6.97 86.58 0.60 22.62 16 5 O -0.57 -28.65 10.76 -4.13 -0.04 -28.70 16 6 C -0.25 -7.21 6.08 -18.91 -0.11 -7.33 16 7 C 0.05 0.75 8.73 83.87 0.73 1.48 16 8 N -0.53 -5.52 5.88 -193.89 -1.14 -6.66 16 9 H 0.44 0.43 8.96 -92.71 -0.83 -0.40 16 10 C 0.02 0.36 11.80 83.43 0.98 1.34 16 11 C -0.13 -3.56 5.78 -18.77 -0.11 -3.67 16 12 C -0.01 -0.39 5.32 -20.05 -0.11 -0.50 16 13 C -0.10 -3.98 8.26 22.49 0.19 -3.80 16 14 C -0.14 -5.27 10.03 22.24 0.22 -5.05 16 15 C -0.13 -4.03 10.04 22.31 0.22 -3.81 16 16 C -0.12 -3.21 10.03 22.24 0.22 -2.99 16 17 C -0.12 -3.20 9.72 22.49 0.22 -2.98 16 18 C 0.13 5.42 4.60 46.75 0.21 5.63 16 19 C 0.16 8.80 6.78 86.44 0.59 9.39 16 20 N -0.63 -37.38 3.70 -716.67 -2.65 -40.04 16 21 C -0.23 -14.71 10.70 84.03 0.90 -13.81 16 22 H 0.08 4.87 7.83 -2.91 -0.02 4.85 16 23 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 24 N -0.95 -63.29 11.39 21.65 0.25 -63.04 16 25 Si 0.98 49.70 29.55 68.60 2.03 51.72 16 26 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 28 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 29 C 0.12 5.57 8.27 86.49 0.72 6.28 16 30 H 0.06 0.91 6.59 -2.38 -0.02 0.89 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.59 7.89 -2.38 -0.02 1.57 16 34 H 0.11 1.62 4.60 -2.39 -0.01 1.60 16 35 H 0.23 2.24 3.36 -2.91 -0.01 2.23 16 36 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.08 3.68 8.00 -2.91 -0.02 3.66 16 38 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.13 4.60 7.91 -2.39 -0.02 4.58 16 43 H 0.02 1.38 5.69 -2.39 -0.01 1.37 16 44 H 0.03 1.95 7.16 -2.39 -0.02 1.94 16 45 H 0.25 15.74 8.31 -92.70 -0.77 14.97 16 46 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.03 1.60 6.33 -2.39 -0.02 1.59 16 Total: -1.00 -95.17 375.84 3.47 -91.70 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.18 Total: 18.30 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 7.07 Total: -1.00 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.76 Total: -132.02 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.04 Total: -28.70 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.03 Total: 51.72 kcal Total: -95.17 3.47 -91.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957390198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.383 kcal (2) G-P(sol) polarization free energy of solvation -95.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds