Wall clock time and date at job start Sat Apr 11 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47328 * 2 1 4 4 C 1.34770 * 120.00123 * 271.07045 * 3 2 1 5 5 O 1.21712 * 120.00025 * 185.87498 * 4 3 2 6 6 C 1.46583 * 119.99996 * 5.86862 * 4 3 2 7 7 C 1.38050 * 126.00645 * 187.45368 * 6 4 3 8 8 C 1.39367 * 107.44226 * 179.84145 * 7 6 4 9 9 C 1.37827 * 107.65242 * 0.41655 * 8 7 6 10 10 C 1.47812 * 125.82313 * 179.74164 * 9 8 7 11 11 C 1.39590 * 120.14301 * 179.72124 * 10 9 8 12 12 C 1.37957 * 119.84970 * 179.74186 * 11 10 9 13 13 C 1.38360 * 120.14372 * 0.53506 * 12 11 10 14 14 C 1.38362 * 120.29938 * 359.74103 * 13 12 11 15 15 C 1.37957 * 120.14429 * 359.97438 * 14 13 12 16 16 N 1.36409 * 108.34720 * 359.73964 * 9 8 7 17 17 H 0.97003 * 125.71244 * 179.97438 * 16 9 8 18 18 C 1.46504 * 119.99787 * 91.06419 * 3 2 1 19 19 C 1.53498 * 114.20269 * 120.00475 * 18 3 2 20 20 N 1.47059 * 87.98668 * 87.51772 * 19 18 3 21 21 C 1.36936 * 136.05708 * 207.08004 * 20 19 18 22 22 H 1.08003 * 120.00256 * 7.99581 * 21 20 19 23 23 C 1.38813 * 120.00060 * 187.98811 * 21 20 19 24 24 N 1.31625 * 120.00348 * 194.73690 * 23 21 20 25 25 Si 1.86805 * 119.99921 * 14.73498 * 23 21 20 26 26 H 1.48495 * 109.47016 * 269.99866 * 25 23 21 27 27 H 1.48502 * 109.46915 * 30.00291 * 25 23 21 28 28 H 1.48505 * 109.46863 * 149.99839 * 25 23 21 29 29 C 1.47070 * 87.88810 * 27.34199 * 20 19 18 30 30 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46998 * 299.99957 * 1 2 3 32 32 H 1.08993 * 109.47125 * 59.99682 * 1 2 3 33 33 H 1.09000 * 109.47317 * 240.00097 * 2 1 3 34 34 H 1.08998 * 109.47211 * 119.99834 * 2 1 3 35 35 H 1.08002 * 126.28156 * 359.96245 * 7 6 4 36 36 H 1.07997 * 126.17406 * 180.15189 * 8 7 6 37 37 H 1.07996 * 120.07496 * 0.02636 * 11 10 9 38 38 H 1.07998 * 119.92717 * 180.29274 * 12 11 10 39 39 H 1.07997 * 119.85295 * 179.76110 * 13 12 11 40 40 H 1.07995 * 119.93325 * 179.97438 * 14 13 12 41 41 H 1.08003 * 120.07278 * 180.02562 * 15 14 13 42 42 H 1.08997 * 113.28507 * 346.93702 * 18 3 2 43 43 H 1.08999 * 113.47036 * 332.73528 * 19 18 3 44 44 H 1.09001 * 113.46519 * 202.29791 * 19 18 3 45 45 H 0.97003 * 119.99149 * 354.69272 * 24 23 21 46 46 H 1.08996 * 113.47038 * 87.43255 * 29 20 19 47 47 H 1.08998 * 113.46859 * 217.88411 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2225 2.0238 -1.1669 5 8 2.7283 3.1309 -1.1717 6 6 1.8354 1.3895 -2.4304 7 6 2.1150 1.8645 -3.6961 8 6 1.5731 0.9625 -4.6100 9 6 0.9631 -0.0438 -3.8924 10 6 0.2554 -1.2081 -4.4653 11 6 -0.3169 -2.1640 -3.6242 12 6 -0.9807 -3.2455 -4.1654 13 6 -1.0703 -3.3898 -5.5385 14 6 -0.5003 -2.4490 -6.3779 15 6 0.1612 -1.3597 -5.8498 16 7 1.1241 0.2181 -2.5634 17 1 0.7926 -0.3290 -1.8343 18 6 2.2848 2.0640 1.2686 19 6 3.7381 2.5269 1.4410 20 7 3.3674 3.7743 0.7560 21 6 4.0150 4.7126 -0.0026 22 1 5.0330 4.5415 -0.3200 23 6 3.3629 5.8836 -0.3637 24 7 3.8579 6.6458 -1.3159 25 14 1.7828 6.3778 0.5015 26 1 0.6212 5.8013 -0.2219 27 1 1.8012 5.8666 1.8957 28 1 1.6701 7.8585 0.5186 29 6 1.9966 3.5742 1.2497 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.6563 2.7682 -3.9345 36 1 1.6188 1.0405 -5.6861 37 1 -0.2442 -2.0547 -2.5523 38 1 -1.4280 -3.9833 -3.5158 39 1 -1.5877 -4.2403 -5.9571 40 1 -0.5735 -2.5676 -7.4488 41 1 0.6053 -0.6258 -6.5060 42 1 1.8768 1.5408 2.1334 43 1 4.4550 1.9229 0.8849 44 1 4.0266 2.6726 2.4820 45 1 4.7169 6.4307 -1.7118 46 1 1.8260 3.9958 2.2402 47 1 1.2298 3.8622 0.5306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957453065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:37 Heat of formation + Delta-G solvation = 170.472860 kcal Electronic energy + Delta-G solvation = -30100.736299 eV Core-core repulsion = 26254.360786 eV Total energy + Delta-G solvation = -3846.375513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49361 -39.80920 -38.88354 -36.57493 -35.71016 -32.21471 -32.07857 -31.55408 -30.78010 -29.98455 -28.22165 -27.30735 -25.18906 -24.13181 -23.19805 -22.98765 -22.64945 -20.94432 -20.70232 -19.52857 -18.89695 -17.51530 -17.23001 -16.82743 -16.03752 -15.62187 -15.15857 -14.99745 -14.85548 -14.53592 -14.18035 -14.09626 -13.73093 -13.71615 -13.51464 -13.26109 -13.07746 -12.93382 -12.87848 -12.51404 -12.43123 -12.27683 -11.91401 -11.57274 -11.51538 -11.43401 -11.23220 -11.08634 -10.78776 -10.40368 -10.01981 -9.57754 -9.49365 -9.24951 -9.16264 -8.83538 -8.81789 -8.21011 -8.05172 -7.53607 -6.65049 -5.93630 -2.77886 0.68689 1.11731 2.02850 2.90237 3.07401 3.30824 3.58665 3.65053 3.70310 3.78849 3.98876 4.48747 4.56001 4.56811 4.66329 4.75415 4.83972 4.84878 4.89108 4.99426 5.06037 5.13658 5.23033 5.32492 5.39175 5.44800 5.49498 5.51491 5.59982 5.64526 5.75732 5.83063 5.90751 6.03662 6.07270 6.13658 6.22863 6.29479 6.33874 6.36903 6.44437 6.51317 6.62776 6.67714 6.92354 7.09189 7.23138 7.41033 7.44568 7.89425 8.55688 9.01626 9.32290 9.89731 10.71829 11.57944 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.003350 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.255302 B = 8355.427018 C = 9228.764872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.091 3.909 3 N -0.603 5.603 4 C 0.534 3.466 5 O -0.389 6.389 6 C -0.016 4.016 7 C -0.117 4.117 8 C -0.176 4.176 9 C 0.046 3.954 10 C -0.005 4.005 11 C -0.128 4.128 12 C -0.111 4.111 13 C -0.129 4.129 14 C -0.111 4.111 15 C -0.104 4.104 16 N -0.544 5.544 17 H 0.420 0.580 18 C 0.103 3.897 19 C 0.103 3.897 20 N -0.593 5.593 21 C -0.247 4.247 22 H 0.071 0.929 23 C -0.022 4.022 24 N -0.946 5.946 25 Si 1.063 2.937 26 H -0.301 1.301 27 H -0.287 1.287 28 H -0.302 1.302 29 C 0.097 3.903 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.256 0.744 46 H 0.049 0.951 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -23.889 -3.199 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.033 4.033 3 N -0.340 5.340 4 C 0.318 3.682 5 O -0.253 6.253 6 C -0.131 4.131 7 C -0.143 4.143 8 C -0.201 4.201 9 C -0.069 4.069 10 C -0.005 4.005 11 C -0.147 4.147 12 C -0.129 4.129 13 C -0.147 4.147 14 C -0.129 4.129 15 C -0.123 4.123 16 N -0.151 5.151 17 H 0.269 0.731 18 C -0.002 4.002 19 C -0.025 4.025 20 N -0.320 5.320 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.220 4.220 24 N -0.591 5.591 25 Si 0.897 3.103 26 H -0.229 1.229 27 H -0.214 1.214 28 H -0.231 1.231 29 C -0.030 4.030 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.868 -21.963 -3.165 25.164 hybrid contribution 0.918 -1.621 0.359 1.897 sum -10.950 -23.584 -2.806 26.153 Atomic orbital electron populations 1.22596 0.96565 1.02354 1.04093 1.21783 0.93789 0.84606 1.03149 1.47443 1.68467 1.12536 1.05577 1.17668 0.81471 0.87495 0.81526 1.91674 1.34703 1.15136 1.83773 1.21190 1.05446 0.89856 0.96586 1.21290 1.02563 1.00579 0.89820 1.21074 1.04524 0.95473 0.99058 1.19106 1.06229 0.97990 0.83591 1.18133 0.96866 0.92152 0.93393 1.21077 0.99618 0.95059 0.98948 1.21009 0.98945 0.97594 0.95384 1.21198 1.00453 0.99459 0.93566 1.21098 0.97639 0.94243 0.99967 1.21153 0.99271 0.98289 0.93601 1.43586 1.43574 1.20721 1.07206 0.73084 1.22752 0.98726 0.94297 0.84417 1.22768 0.94137 0.89836 0.95797 1.45795 1.04172 1.26021 1.56020 1.19704 0.98121 0.95384 1.24094 0.91082 1.25375 1.04294 0.93535 0.98754 1.70865 1.19882 1.43789 1.24590 0.83762 0.76069 0.74890 0.75588 1.22911 1.21424 1.23062 1.22941 0.91318 0.91088 0.97635 0.91299 0.90483 0.91894 0.90833 0.89517 0.83069 0.84066 0.86921 0.85904 0.86039 0.85664 0.85209 0.89113 0.94073 0.94220 0.93402 0.93328 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 8.94 37.16 0.33 -1.50 16 2 C 0.09 1.01 5.62 -4.04 -0.02 0.99 16 3 N -0.60 -9.93 2.74 -167.29 -0.46 -10.39 16 4 C 0.53 10.92 7.13 -12.90 -0.09 10.83 16 5 O -0.39 -10.13 10.30 5.18 0.05 -10.08 16 6 C -0.02 -0.29 6.58 -81.94 -0.54 -0.83 16 7 C -0.12 -2.10 10.61 -39.23 -0.42 -2.51 16 8 C -0.18 -2.57 10.22 -39.31 -0.40 -2.97 16 9 C 0.05 0.62 6.93 -82.07 -0.57 0.05 16 10 C 0.00 -0.05 5.87 -104.97 -0.62 -0.67 16 11 C -0.13 -1.22 9.70 -39.18 -0.38 -1.60 16 12 C -0.11 -0.89 10.03 -39.64 -0.40 -1.29 16 13 C -0.13 -0.98 10.04 -39.49 -0.40 -1.38 16 14 C -0.11 -0.91 10.03 -39.64 -0.40 -1.30 16 15 C -0.10 -1.02 9.56 -39.18 -0.37 -1.40 16 16 N -0.54 -7.48 4.13 -5.81 -0.02 -7.50 16 17 H 0.42 4.69 2.45 -40.82 -0.10 4.59 16 18 C 0.10 1.77 4.88 -67.67 -0.33 1.44 16 19 C 0.10 2.08 8.21 -8.51 -0.07 2.01 16 20 N -0.59 -15.13 1.95 -184.61 -0.36 -15.49 16 21 C -0.25 -7.46 8.57 -15.06 -0.13 -7.59 16 22 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 23 C -0.02 -0.71 5.29 -17.43 -0.09 -0.80 16 24 N -0.95 -31.77 13.70 55.49 0.76 -31.01 16 25 Si 1.06 28.89 25.50 -169.99 -4.34 24.56 16 26 H -0.30 -8.12 6.97 56.52 0.39 -7.72 16 27 H -0.29 -7.13 5.62 56.52 0.32 -6.81 16 28 H -0.30 -8.31 7.11 56.52 0.40 -7.91 16 29 C 0.10 2.13 4.56 -8.36 -0.04 2.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 33 H 0.07 0.81 5.19 -51.93 -0.27 0.54 16 34 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 36 H 0.14 1.68 7.26 -52.49 -0.38 1.30 16 37 H 0.11 0.90 7.14 -52.49 -0.37 0.52 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 1.12 6.98 -52.48 -0.37 0.75 16 42 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.26 8.55 8.73 -40.82 -0.36 8.20 16 46 H 0.05 1.02 7.01 -51.93 -0.36 0.66 16 47 H 0.05 1.25 5.59 -51.93 -0.29 0.96 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -37.87 366.69 -10.14 -48.01 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.37 Total: 2.83 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.93 Total: -6.45 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.08 Total: -64.39 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.05 Total: -10.08 kcal Atomic # 14 Polarization: 28.89 SS G_CDS: -4.34 Total: 24.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.87 -10.14 -48.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957453065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.480 kcal (2) G-P(sol) polarization free energy of solvation -37.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds