Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00006 * 2 1 4 4 C 1.52993 * 109.47083 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.34808 * 126.59979 * 124.99880 * 5 4 3 7 7 C 1.36591 * 106.84288 * 179.97438 * 6 5 4 8 8 C 1.47530 * 125.77053 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99830 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00075 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47101 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.64405 * 303.31278 * 12 11 10 14 14 C 1.54316 * 110.72079 * 66.45323 * 12 11 10 15 15 N 1.47022 * 107.27320 * 140.73500 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31619 * 119.99643 * 27.28488 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48496 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46883 * 240.00007 * 20 18 16 23 23 H 1.48496 * 109.47035 * 120.00305 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 N 1.34401 * 108.46050 * 0.23818 * 7 6 5 29 29 N 1.28764 * 109.51868 * 359.59200 * 28 7 6 30 30 H 1.09008 * 109.47177 * 300.00385 * 1 2 3 31 31 H 1.08999 * 109.47212 * 60.00079 * 1 2 3 32 32 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47551 * 59.99616 * 3 2 1 34 34 H 1.09006 * 109.46843 * 299.99514 * 3 2 1 35 35 H 1.09010 * 109.47271 * 59.99583 * 4 3 2 36 36 H 1.09006 * 109.46930 * 299.99885 * 4 3 2 37 37 H 1.08006 * 126.57688 * 359.97438 * 6 5 4 38 38 H 0.97009 * 119.99276 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47157 * 60.00072 * 11 10 8 40 40 H 1.08995 * 109.46843 * 300.00103 * 11 10 8 41 41 H 1.08999 * 109.88637 * 21.31506 * 14 12 11 42 42 H 1.09000 * 110.01685 * 260.22216 * 14 12 11 43 43 H 0.96994 * 120.00297 * 5.84617 * 19 18 16 44 44 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 45 45 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 46 46 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0257 3.0049 0.8848 7 6 5.3070 4.2867 0.5057 8 6 6.2393 5.2032 1.1893 9 8 6.8361 4.8341 2.1824 10 7 6.4304 6.4493 0.7124 11 6 7.3558 7.3595 1.3915 12 6 7.3875 8.6990 0.6529 13 1 7.6624 8.5553 -0.3920 14 6 6.0262 9.4170 0.7655 15 7 6.3019 10.8494 0.9492 16 6 5.3592 11.8294 1.1104 17 1 4.3355 11.5633 1.3290 18 6 5.7191 13.1648 0.9928 19 7 6.7419 13.5067 0.2383 20 14 4.7519 14.4768 1.9055 21 1 3.6575 13.8368 2.6787 22 1 4.1732 15.4342 0.9290 23 1 5.6559 15.2022 2.8337 24 6 7.7613 11.0567 0.9248 25 6 8.3609 9.6892 1.3453 26 1 8.3391 9.5657 2.4281 27 8 9.6896 9.5377 0.8418 28 7 4.5864 4.5738 -0.5919 29 7 3.8815 3.5487 -0.9240 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6436 0.8892 37 1 5.4403 2.4785 1.7318 38 1 5.9551 6.7432 -0.0805 39 1 8.3549 6.9239 1.3978 40 1 7.0222 7.5183 2.4170 41 1 5.4742 9.0328 1.6232 42 1 5.4477 9.2648 -0.1457 43 1 7.1911 12.8379 -0.3018 44 1 8.0896 11.3249 -0.0794 45 1 8.0464 11.8308 1.6373 46 1 10.3336 10.1358 1.2452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958062197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = -3.793482 kcal Electronic energy + Delta-G solvation = -28672.748966 eV Core-core repulsion = 24407.967433 eV Total energy + Delta-G solvation = -4264.781532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53999 -39.56273 -38.67132 -38.31978 -35.40403 -35.31103 -34.79395 -32.40391 -31.50995 -30.53751 -29.41511 -27.78234 -27.05650 -25.54799 -24.56655 -24.11573 -22.82251 -22.18837 -20.79714 -20.16249 -19.92029 -18.42646 -17.60054 -17.32339 -17.05721 -16.85753 -16.33226 -16.11730 -15.82817 -15.59218 -15.14966 -14.86897 -14.61051 -14.35777 -14.24248 -13.82686 -13.60005 -13.53059 -13.07967 -12.87219 -12.66899 -12.43977 -12.26681 -12.18184 -12.02761 -11.95021 -11.54036 -11.13361 -10.88474 -10.78794 -10.70492 -10.52495 -10.40811 -10.33083 -10.06405 -9.95009 -9.72792 -9.63023 -9.33255 -8.99237 -8.43928 -6.99360 -6.11465 -3.15264 0.77396 1.47087 1.49228 3.05821 3.08495 3.19343 3.51209 3.54242 3.67661 3.87033 3.95722 4.14232 4.38277 4.46462 4.48939 4.61074 4.62317 4.69547 4.72658 4.80920 4.93776 4.94056 5.08986 5.10204 5.12388 5.27882 5.38185 5.47469 5.59513 5.73348 5.82112 5.90941 5.91651 6.08795 6.22784 6.34985 6.40650 6.54463 6.70049 6.85086 6.94471 7.39574 7.68801 7.73205 7.98899 8.12574 8.45706 8.99087 9.79002 10.31064 11.21832 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002048 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.373511 B =13666.607084 C =15114.427918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.098 3.902 7 C -0.097 4.097 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.707 5.707 11 C 0.135 3.865 12 C -0.105 4.105 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.601 5.601 16 C -0.336 4.336 17 H 0.069 0.931 18 C -0.027 4.027 19 N -0.921 5.921 20 Si 1.070 2.930 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.120 3.880 25 C 0.091 3.909 26 H 0.066 0.934 27 O -0.565 6.565 28 N -0.198 5.198 29 N -0.062 5.062 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.270 0.730 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -27.200 1.241 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.058 4.058 7 C -0.236 4.236 8 C 0.387 3.613 9 O -0.419 6.419 10 N -0.357 5.357 11 C 0.011 3.989 12 C -0.124 4.124 13 H 0.107 0.893 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.463 4.463 17 H 0.087 0.913 18 C -0.228 4.228 19 N -0.563 5.563 20 Si 0.900 3.100 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.217 1.217 24 C -0.007 4.007 25 C 0.031 3.969 26 H 0.084 0.916 27 O -0.370 6.370 28 N -0.072 5.072 29 N -0.043 5.043 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.279 -26.026 0.706 26.782 hybrid contribution 0.213 -1.246 0.360 1.314 sum -6.067 -27.272 1.066 27.959 Atomic orbital electron populations 1.22818 0.79528 1.03327 1.00638 1.87773 1.20903 1.26410 1.95651 1.22629 0.91829 0.85854 1.02571 1.21694 0.93273 0.77951 1.06647 1.50304 1.30642 1.13610 1.20414 1.23395 0.91917 0.94880 0.95612 1.21528 1.07181 0.95591 0.99328 1.16701 0.80354 0.81176 0.83075 1.90807 1.49213 1.76309 1.25609 1.45815 1.45499 1.12629 1.31774 1.21444 0.93090 0.88107 0.96229 1.22403 0.96634 0.92783 1.00608 0.89254 1.21393 0.92790 0.85848 0.98461 1.44409 1.00867 1.01815 1.85834 1.19821 0.91450 0.87135 1.47938 0.91319 1.25749 1.00801 0.96657 0.99607 1.70728 1.24566 1.36822 1.24141 0.83466 0.75014 0.75427 0.76125 1.21842 1.22153 1.21657 1.22211 0.85372 0.93745 0.99326 1.23089 0.81349 0.96198 0.96260 0.91563 1.86416 1.18574 1.63836 1.68191 1.74692 1.03622 1.18760 1.10122 1.82026 1.20281 0.90373 1.11610 0.93621 0.93470 0.88971 0.92209 0.91152 0.87276 0.86656 0.77599 0.75395 0.90770 0.90933 0.95041 0.95381 0.91830 0.94666 0.92614 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.41 10.70 -35.23 -0.38 -2.79 16 3 C 0.05 0.28 6.14 37.15 0.23 0.50 16 4 C 0.13 0.60 6.91 -4.05 -0.03 0.57 16 5 N -0.36 -3.01 3.69 -61.06 -0.23 -3.24 16 6 C 0.10 0.87 11.27 -16.84 -0.19 0.68 16 7 C -0.10 -1.19 6.99 -83.55 -0.58 -1.78 16 8 C 0.60 8.61 7.82 -12.47 -0.10 8.52 16 9 O -0.54 -8.84 16.86 5.28 0.09 -8.75 16 10 N -0.71 -10.07 5.40 -61.36 -0.33 -10.40 16 11 C 0.13 2.04 5.01 -4.05 -0.02 2.02 16 12 C -0.11 -1.81 2.74 -88.79 -0.24 -2.06 16 13 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.14 2.91 6.52 -3.07 -0.02 2.89 16 15 N -0.60 -15.21 3.33 -169.94 -0.57 -15.77 16 16 C -0.34 -9.51 10.05 -15.06 -0.15 -9.66 16 17 H 0.07 1.94 7.96 -52.49 -0.42 1.53 16 18 C -0.03 -0.77 5.09 -17.43 -0.09 -0.86 16 19 N -0.92 -27.84 12.82 55.49 0.71 -27.13 16 20 Si 1.07 25.52 30.00 -169.99 -5.10 20.42 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.12 2.75 4.96 -2.41 -0.01 2.74 16 25 C 0.09 1.65 3.89 -24.47 -0.10 1.56 16 26 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 27 O -0.57 -9.22 13.47 -35.23 -0.47 -9.70 16 28 N -0.20 -2.62 12.04 32.85 0.40 -2.22 16 29 N -0.06 -0.73 13.65 60.35 0.82 0.09 16 30 H 0.05 0.16 8.14 -51.92 -0.42 -0.26 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.12 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.21 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.41 5.63 8.01 -40.82 -0.33 5.30 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 41 H 0.03 0.65 7.77 -51.93 -0.40 0.24 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.27 8.18 5.83 -40.82 -0.24 7.94 16 44 H 0.04 0.88 6.84 -51.93 -0.36 0.53 16 45 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 46 H 0.38 4.62 9.12 45.56 0.42 5.04 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -36.25 390.47 -5.37 -41.62 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.01 Total: 5.62 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.19 Total: 6.36 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.81 Total: -58.67 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.76 Total: -21.24 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.25 -5.37 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958062197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.823 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds