Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00006 * 2 1 4 4 C 1.52993 * 109.47083 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.34808 * 126.59979 * 124.99880 * 5 4 3 7 7 C 1.36591 * 106.84288 * 179.97438 * 6 5 4 8 8 C 1.47530 * 125.77053 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99830 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00075 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47101 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.64405 * 303.31278 * 12 11 10 14 14 C 1.54316 * 110.72079 * 66.45323 * 12 11 10 15 15 N 1.47022 * 107.27320 * 140.73500 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31619 * 119.99643 * 27.28488 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48496 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46883 * 240.00007 * 20 18 16 23 23 H 1.48496 * 109.47035 * 120.00305 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 N 1.34401 * 108.46050 * 0.23818 * 7 6 5 29 29 N 1.28764 * 109.51868 * 359.59200 * 28 7 6 30 30 H 1.09008 * 109.47177 * 300.00385 * 1 2 3 31 31 H 1.08999 * 109.47212 * 60.00079 * 1 2 3 32 32 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47551 * 59.99616 * 3 2 1 34 34 H 1.09006 * 109.46843 * 299.99514 * 3 2 1 35 35 H 1.09010 * 109.47271 * 59.99583 * 4 3 2 36 36 H 1.09006 * 109.46930 * 299.99885 * 4 3 2 37 37 H 1.08006 * 126.57688 * 359.97438 * 6 5 4 38 38 H 0.97009 * 119.99276 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47157 * 60.00072 * 11 10 8 40 40 H 1.08995 * 109.46843 * 300.00103 * 11 10 8 41 41 H 1.08999 * 109.88637 * 21.31506 * 14 12 11 42 42 H 1.09000 * 110.01685 * 260.22216 * 14 12 11 43 43 H 0.96994 * 120.00297 * 5.84617 * 19 18 16 44 44 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 45 45 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 46 46 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 -0.0013 6 6 5.0257 3.0049 0.8848 7 6 5.3070 4.2867 0.5057 8 6 6.2393 5.2032 1.1893 9 8 6.8361 4.8341 2.1824 10 7 6.4304 6.4493 0.7124 11 6 7.3558 7.3595 1.3915 12 6 7.3875 8.6990 0.6529 13 1 7.6624 8.5553 -0.3920 14 6 6.0262 9.4170 0.7655 15 7 6.3019 10.8494 0.9492 16 6 5.3592 11.8294 1.1104 17 1 4.3355 11.5633 1.3290 18 6 5.7191 13.1648 0.9928 19 7 6.7419 13.5067 0.2383 20 14 4.7519 14.4768 1.9055 21 1 3.6575 13.8368 2.6787 22 1 4.1732 15.4342 0.9290 23 1 5.6559 15.2022 2.8337 24 6 7.7613 11.0567 0.9248 25 6 8.3609 9.6892 1.3453 26 1 8.3391 9.5657 2.4281 27 8 9.6896 9.5377 0.8418 28 7 4.5864 4.5738 -0.5919 29 7 3.8815 3.5487 -0.9240 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6436 0.8892 37 1 5.4403 2.4785 1.7318 38 1 5.9551 6.7432 -0.0805 39 1 8.3549 6.9239 1.3978 40 1 7.0222 7.5183 2.4170 41 1 5.4742 9.0328 1.6232 42 1 5.4477 9.2648 -0.1457 43 1 7.1911 12.8379 -0.3018 44 1 8.0896 11.3249 -0.0794 45 1 8.0464 11.8308 1.6373 46 1 10.3336 10.1358 1.2452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958062197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = -34.659686 kcal Electronic energy + Delta-G solvation = -28674.087425 eV Core-core repulsion = 24407.967433 eV Total energy + Delta-G solvation = -4266.119991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.33260 -40.78589 -39.82596 -39.08125 -36.83340 -36.30255 -35.95940 -34.15925 -32.34914 -31.56645 -30.68937 -29.48883 -27.51015 -27.10573 -25.66546 -25.14233 -24.00116 -22.86302 -22.37708 -21.55250 -21.20808 -19.68486 -19.22680 -18.44467 -17.83658 -17.55024 -17.14184 -16.98536 -16.70231 -16.50759 -16.37332 -16.01487 -15.71176 -15.56080 -15.51794 -15.33038 -15.04051 -14.60807 -14.41459 -14.03490 -13.87721 -13.62176 -13.50973 -13.25336 -12.82236 -12.77538 -12.63014 -12.46531 -12.41868 -12.33030 -12.17914 -11.87661 -11.76020 -11.62074 -11.46341 -11.29004 -10.95560 -10.81841 -10.56633 -10.50457 -10.11529 -9.08393 -8.35879 -5.36195 0.05780 0.53983 0.88151 1.57465 1.65510 1.82032 2.01359 2.17440 2.60402 2.63801 3.00478 3.11580 3.20928 3.41837 3.46918 3.57975 3.72964 3.75742 3.77076 3.90163 3.96313 4.06845 4.16940 4.27121 4.27600 4.41843 4.43322 4.45698 4.51186 4.57875 4.66177 4.75446 4.81375 4.82251 4.82874 4.96352 5.10191 5.16164 5.29870 5.31657 5.61412 5.96159 6.26916 6.32518 6.78706 6.80944 6.85553 7.04353 7.65899 8.21328 8.96860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002048 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.373511 B =13666.607084 C =15114.427918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.123 3.877 7 C -0.125 4.125 8 C 0.607 3.393 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.148 3.852 12 C -0.089 4.089 13 H 0.089 0.911 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.346 4.346 17 H 0.064 0.936 18 C -0.080 4.080 19 N -0.948 5.948 20 Si 1.122 2.878 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.124 3.876 25 C 0.111 3.889 26 H 0.084 0.916 27 O -0.565 6.565 28 N -0.224 5.224 29 N -0.086 5.086 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.244 0.756 38 H 0.412 0.588 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.023 0.977 43 H 0.256 0.744 44 H 0.009 0.991 45 H 0.029 0.971 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -29.552 2.539 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.035 4.035 7 C -0.264 4.264 8 C 0.392 3.608 9 O -0.443 6.443 10 N -0.359 5.359 11 C 0.024 3.976 12 C -0.108 4.108 13 H 0.107 0.893 14 C 0.015 3.985 15 N -0.352 5.352 16 C -0.474 4.474 17 H 0.082 0.918 18 C -0.275 4.275 19 N -0.591 5.591 20 Si 0.946 3.054 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.212 1.212 24 C -0.002 4.002 25 C 0.050 3.950 26 H 0.102 0.898 27 O -0.372 6.372 28 N -0.098 5.098 29 N -0.066 5.066 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.260 0.740 38 H 0.248 0.752 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.048 0.952 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.542 -28.422 1.983 29.232 hybrid contribution 0.243 -0.646 -0.082 0.695 sum -6.298 -29.068 1.900 29.803 Atomic orbital electron populations 1.22982 0.78644 1.04383 1.00940 1.87748 1.21946 1.26498 1.95685 1.22565 0.92442 0.85704 1.01938 1.22055 0.92592 0.76284 1.08928 1.50499 1.29868 1.13979 1.19184 1.23905 0.90458 0.93613 0.95514 1.21438 1.08128 0.96780 1.00081 1.16886 0.80173 0.81058 0.82710 1.90787 1.50251 1.76702 1.26560 1.45793 1.45442 1.12808 1.31831 1.21227 0.93770 0.86916 0.95657 1.22227 0.94243 0.93420 1.00944 0.89294 1.21495 0.94897 0.83875 0.98202 1.44679 1.01496 1.03179 1.85845 1.20089 0.92025 0.88243 1.47067 0.91838 1.27171 1.01352 0.99131 0.99866 1.70846 1.26078 1.36478 1.25718 0.82783 0.74359 0.73152 0.75140 1.19785 1.21828 1.21158 1.22131 0.84742 0.96119 0.97227 1.22795 0.82109 0.92941 0.97116 0.89847 1.86390 1.17936 1.64291 1.68595 1.74665 1.04351 1.19842 1.10912 1.81955 1.20720 0.91051 1.12882 0.93153 0.93376 0.87611 0.92297 0.92451 0.86134 0.83273 0.73976 0.75207 0.89982 0.91070 0.94535 0.95913 0.93298 0.97329 0.95214 0.75312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.26 10.70 -148.98 -1.59 -5.85 16 3 C 0.05 0.49 6.14 71.98 0.44 0.94 16 4 C 0.12 0.82 6.91 86.38 0.60 1.42 16 5 N -0.35 -5.01 3.69 -347.10 -1.28 -6.30 16 6 C 0.12 1.83 11.27 83.85 0.95 2.78 16 7 C -0.12 -2.90 6.99 40.82 0.29 -2.61 16 8 C 0.61 16.56 7.82 86.69 0.68 17.24 16 9 O -0.56 -17.41 16.86 -4.01 -0.07 -17.48 16 10 N -0.71 -19.52 5.40 -466.29 -2.52 -22.04 16 11 C 0.15 4.25 5.01 86.38 0.43 4.69 16 12 C -0.09 -3.00 2.74 -9.61 -0.03 -3.03 16 13 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.14 5.80 6.52 86.73 0.57 6.36 16 15 N -0.62 -32.13 3.33 -691.57 -2.30 -34.43 16 16 C -0.35 -19.91 10.05 84.03 0.84 -19.07 16 17 H 0.06 3.63 7.96 -2.91 -0.02 3.61 16 18 C -0.08 -4.63 5.09 84.86 0.43 -4.20 16 19 N -0.95 -58.84 12.82 21.65 0.28 -58.56 16 20 Si 1.12 51.78 30.00 68.60 2.06 53.83 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 C 0.12 5.84 4.96 86.93 0.43 6.27 16 25 C 0.11 3.91 3.89 32.06 0.12 4.04 16 26 H 0.08 2.71 8.05 -2.39 -0.02 2.69 16 27 O -0.56 -17.49 13.47 -148.98 -2.01 -19.50 16 28 N -0.22 -5.82 12.04 -49.99 -0.60 -6.42 16 29 N -0.09 -1.94 13.65 37.02 0.51 -1.43 16 30 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.15 0.07 8.08 -2.38 -0.02 0.05 16 37 H 0.24 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.41 11.17 8.01 -92.70 -0.74 10.43 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 41 H 0.04 1.48 7.77 -2.39 -0.02 1.47 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.26 16.18 5.83 -92.71 -0.54 15.64 16 44 H 0.01 0.47 6.84 -2.39 -0.02 0.45 16 45 H 0.03 1.52 7.73 -2.38 -0.02 1.50 16 46 H 0.40 9.01 9.12 -74.06 -0.68 8.34 16 Total: -1.00 -79.89 390.47 -0.70 -80.59 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.17 Total: 21.35 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.00 Total: 16.25 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.92 Total: -129.19 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -3.67 Total: -42.83 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.83 kcal Total: -79.89 -0.70 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958062197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.926 kcal (2) G-P(sol) polarization free energy of solvation -79.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds