Wall clock time and date at job start Sat Apr 11 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36836 * 125.06220 * 2 1 4 4 C 1.34239 * 109.92675 * 180.17935 * 3 2 1 5 5 C 1.50701 * 126.49763 * 179.82874 * 4 3 2 6 6 C 1.50696 * 109.47257 * 264.68845 * 5 4 3 7 7 O 1.21277 * 120.00330 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99486 * 180.02562 * 8 6 5 10 10 H 1.08997 * 115.52156 * 9.41890 * 9 8 6 11 11 C 1.53003 * 117.44006 * 224.00168 * 9 8 6 12 12 H 1.08997 * 119.54218 * 4.12173 * 11 9 8 13 13 C 1.57742 * 116.08235 * 161.57830 * 11 9 8 14 14 N 1.48146 * 104.61643 * 87.41029 * 13 11 9 15 15 C 1.36936 * 127.84346 * 139.76300 * 14 13 11 16 16 H 1.07999 * 119.99498 * 344.35885 * 15 14 13 17 17 C 1.38810 * 120.00072 * 164.35317 * 15 14 13 18 18 N 1.31610 * 120.00395 * 350.57350 * 17 15 14 19 19 Si 1.86803 * 119.99750 * 170.57480 * 17 15 14 20 20 H 1.48500 * 109.47296 * 89.99875 * 19 17 15 21 21 H 1.48498 * 109.47422 * 210.00255 * 19 17 15 22 22 H 1.48501 * 109.47210 * 330.00111 * 19 17 15 23 23 C 1.48150 * 104.32443 * 319.76094 * 14 13 11 24 24 C 1.53006 * 117.44055 * 154.83763 * 9 8 6 25 25 H 1.08996 * 119.53820 * 355.87697 * 24 9 8 26 26 C 1.46483 * 107.00160 * 359.56953 * 4 3 2 27 27 C 1.39623 * 134.03452 * 180.28269 * 26 4 3 28 28 C 1.36627 * 119.76640 * 179.97438 * 27 26 4 29 29 C 1.38828 * 120.52856 * 0.02562 * 28 27 26 30 30 C 1.37746 * 120.66626 * 0.02562 * 29 28 27 31 31 C 1.37693 * 125.06398 * 179.69204 * 2 1 3 32 32 H 1.08996 * 109.47422 * 270.30569 * 1 2 3 33 33 H 1.09003 * 109.46913 * 30.30525 * 1 2 3 34 34 H 1.09002 * 109.46709 * 150.30072 * 1 2 3 35 35 H 1.08000 * 125.03318 * 0.03460 * 3 2 1 36 36 H 1.09005 * 109.47095 * 24.69140 * 5 4 3 37 37 H 1.09004 * 109.47021 * 144.68997 * 5 4 3 38 38 H 0.97000 * 119.99956 * 0.02562 * 8 6 5 39 39 H 1.08995 * 110.96294 * 328.34902 * 13 11 9 40 40 H 1.08997 * 109.85717 * 205.91407 * 13 11 9 41 41 H 0.97001 * 120.00111 * 179.97438 * 18 17 15 42 42 H 1.08997 * 110.40617 * 280.80627 * 23 14 13 43 43 H 1.09000 * 110.50972 * 158.41663 * 23 14 13 44 44 H 1.08006 * 120.12045 * 359.97438 * 27 26 4 45 45 H 1.08004 * 119.73760 * 180.02562 * 28 27 26 46 46 H 1.07997 * 119.66627 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.11238 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0040 5 6 4.7284 1.7049 -0.0089 6 6 5.1992 1.9121 -1.4254 7 8 4.6310 1.3554 -2.3408 8 7 6.2512 2.7169 -1.6750 9 6 6.7084 2.9186 -3.0521 10 1 6.0558 2.5171 -3.8272 11 6 8.2163 2.8754 -3.3078 12 1 8.8935 2.6324 -2.4891 13 6 8.6597 2.6431 -4.8037 14 7 8.7061 4.0006 -5.3950 15 6 9.6352 4.5071 -6.2641 16 1 10.5791 4.0005 -6.4009 17 6 9.3637 5.6714 -6.9694 18 7 8.1529 6.1867 -6.9479 19 14 10.7170 6.5069 -7.9492 20 1 10.7318 5.9674 -9.3327 21 1 10.4667 7.9701 -7.9911 22 1 12.0285 6.2475 -7.3028 23 6 7.5192 4.6861 -4.8327 24 6 7.4575 4.2160 -3.3634 25 1 7.5693 4.9717 -2.5860 26 6 3.5946 -0.6945 0.0038 27 6 4.6295 -1.6317 0.0092 28 6 4.3361 -2.9661 0.0167 29 6 3.0167 -3.3981 0.0184 30 6 1.9804 -2.4907 0.0121 31 6 2.2560 -1.1270 0.0061 32 1 -0.3634 0.0055 1.0276 33 1 -0.3633 0.8873 -0.5186 34 1 -0.3633 -0.8927 -0.5092 35 1 1.8834 2.1355 0.0005 36 1 4.4352 2.6630 0.4203 37 1 5.5358 1.2736 0.5829 38 1 6.7055 3.1624 -0.9428 39 1 7.9364 2.0226 -5.3329 40 1 9.6475 2.1832 -4.8300 41 1 7.9633 7.0006 -7.4404 42 1 6.6179 4.3846 -5.3663 43 1 7.6445 5.7678 -4.8806 44 1 5.6583 -1.3032 0.0075 45 1 5.1370 -3.6907 0.0213 46 1 2.8007 -4.4562 0.0239 47 1 0.9573 -2.8366 0.0140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961628869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:51 Heat of formation + Delta-G solvation = 70.772495 kcal Electronic energy + Delta-G solvation = -27967.705151 eV Core-core repulsion = 24117.006305 eV Total energy + Delta-G solvation = -3850.698846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25489 -40.93164 -39.61393 -37.90440 -36.04469 -34.64711 -34.23058 -32.23692 -31.18973 -30.83793 -29.27502 -28.78908 -27.57790 -26.16336 -23.68528 -23.48372 -22.38661 -21.95432 -21.65062 -20.88766 -20.26137 -18.85436 -17.98629 -17.84027 -17.43522 -17.27780 -16.71188 -16.34346 -16.16104 -15.95927 -15.60569 -15.12026 -14.88808 -14.75899 -14.71578 -14.61110 -13.87179 -13.79396 -13.71084 -13.64635 -13.32801 -13.22077 -13.07316 -12.86508 -12.82921 -12.71371 -12.23857 -12.11686 -12.09652 -11.99220 -11.86274 -11.67134 -11.65332 -10.97263 -10.83801 -10.70154 -10.38724 -9.62862 -9.05140 -8.93578 -8.44324 -7.92621 -5.29609 0.24864 0.74383 1.46706 1.48440 1.58287 1.61309 1.68904 1.98743 2.25286 2.49069 2.90398 3.03465 3.28598 3.61676 3.77442 3.85128 3.87364 3.90999 3.98522 4.03549 4.09312 4.15773 4.30571 4.32616 4.39609 4.43798 4.46981 4.53840 4.64105 4.69458 4.72778 4.83717 4.87414 4.90159 4.97079 5.00198 5.01950 5.27719 5.28631 5.41989 5.45940 5.59997 5.60341 5.64265 5.74654 5.85859 5.90742 6.15460 6.33428 6.46867 6.67101 6.99250 7.38714 7.66130 8.45131 9.21550 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.001987 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.532535 B =14091.554205 C =14596.052098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.491 5.491 3 C 0.062 3.938 4 C -0.181 4.181 5 C -0.050 4.050 6 C 0.512 3.488 7 O -0.581 6.581 8 N -0.686 5.686 9 C 0.115 3.885 10 H 0.097 0.903 11 C -0.166 4.166 12 H 0.141 0.859 13 C 0.148 3.852 14 N -0.617 5.617 15 C -0.242 4.242 16 H 0.083 0.917 17 C -0.064 4.064 18 N -0.949 5.949 19 Si 0.983 3.017 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.266 1.266 23 C 0.189 3.811 24 C -0.179 4.179 25 H 0.128 0.872 26 C -0.120 4.120 27 C -0.091 4.091 28 C -0.156 4.156 29 C -0.109 4.109 30 C -0.138 4.138 31 C 0.071 3.929 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.194 0.806 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.419 0.581 39 H 0.017 0.983 40 H 0.062 0.938 41 H 0.250 0.750 42 H -0.008 1.008 43 H 0.059 0.941 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.149 0.851 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -13.561 23.326 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.174 5.174 3 C -0.064 4.064 4 C -0.189 4.189 5 C -0.090 4.090 6 C 0.301 3.699 7 O -0.460 6.460 8 N -0.337 5.337 9 C 0.008 3.992 10 H 0.115 0.885 11 C -0.187 4.187 12 H 0.159 0.841 13 C 0.022 3.978 14 N -0.341 5.341 15 C -0.370 4.370 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.191 1.191 23 C 0.063 3.937 24 C -0.199 4.199 25 H 0.146 0.854 26 C -0.124 4.124 27 C -0.109 4.109 28 C -0.175 4.175 29 C -0.128 4.128 30 C -0.158 4.158 31 C -0.035 4.035 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.211 0.789 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.256 0.744 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.010 0.990 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.166 0.834 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.476 -13.749 22.514 30.091 hybrid contribution 0.649 0.846 -0.885 1.386 sum -13.826 -12.903 21.629 28.731 Atomic orbital electron populations 1.22180 0.75077 1.05265 1.04170 1.43998 1.07128 1.03728 1.62549 1.22039 0.89803 0.92195 1.02352 1.19821 0.94034 0.91413 1.13603 1.19956 0.96668 1.01086 0.91284 1.21482 0.78698 0.77068 0.92646 1.90710 1.57302 1.49416 1.48528 1.45247 1.32828 1.48547 1.07074 1.21336 0.92680 0.99514 0.85704 0.88511 1.24977 0.94047 1.01311 0.98414 0.84089 1.21836 0.98656 0.87028 0.90298 1.45430 1.28030 1.09043 1.51580 1.19396 0.94940 1.07095 1.15589 0.89945 1.25795 0.98852 1.00506 1.00606 1.70105 1.20267 1.22763 1.46511 0.85022 0.78610 0.77089 0.78210 1.21253 1.21773 1.19076 1.20787 0.87643 0.97492 0.87748 1.24280 1.05123 0.91361 0.99185 0.85439 1.19389 0.93029 0.93717 1.06297 1.20468 0.98119 0.92925 0.99400 1.20922 0.97563 0.95384 1.03633 1.21132 0.91904 1.00103 0.99660 1.20309 1.00651 0.88812 1.06023 1.18585 0.90351 0.89385 1.05155 0.89701 0.88507 0.89665 0.78950 0.84721 0.86115 0.74350 0.96501 0.92003 0.94051 0.99010 0.92260 0.86139 0.84399 0.83367 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.03 127.77 1.41 2.17 16 2 N -0.49 -9.50 3.18 -539.26 -1.71 -11.21 16 3 C 0.06 1.21 11.21 83.00 0.93 2.14 16 4 C -0.18 -4.12 4.81 -18.63 -0.09 -4.21 16 5 C -0.05 -0.87 6.23 29.10 0.18 -0.69 16 6 C 0.51 13.73 7.82 87.65 0.69 14.42 16 7 O -0.58 -22.22 15.60 -3.02 -0.05 -22.27 16 8 N -0.69 -16.76 5.56 -442.53 -2.46 -19.22 16 9 C 0.12 3.89 5.93 44.99 0.27 4.15 16 10 H 0.10 4.01 7.40 -2.39 -0.02 3.99 16 11 C -0.17 -5.74 7.33 -8.72 -0.06 -5.80 16 12 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 13 C 0.15 6.43 7.10 87.74 0.62 7.05 16 14 N -0.62 -32.82 3.38 -681.31 -2.30 -35.12 16 15 C -0.24 -13.78 10.35 84.03 0.87 -12.91 16 16 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 17 C -0.06 -3.68 5.40 84.86 0.46 -3.23 16 18 N -0.95 -57.96 10.88 21.65 0.24 -57.72 16 19 Si 0.98 45.81 29.56 68.60 2.03 47.84 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.19 9.58 5.69 86.54 0.49 10.08 16 24 C -0.18 -6.64 6.97 -9.93 -0.07 -6.71 16 25 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 26 C -0.12 -3.10 6.35 -20.20 -0.13 -3.22 16 27 C -0.09 -2.18 10.05 22.23 0.22 -1.96 16 28 C -0.16 -3.20 9.97 22.03 0.22 -2.98 16 29 C -0.11 -2.01 10.01 22.29 0.22 -1.78 16 30 C -0.14 -2.70 9.96 22.37 0.22 -2.48 16 31 C 0.07 1.68 6.81 39.03 0.27 1.94 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.42 6.82 8.83 -92.71 -0.82 6.00 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.06 3.34 6.53 -2.39 -0.02 3.32 16 44 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -82.31 393.10 2.62 -79.69 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.16 Total: 22.05 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.72 Total: -4.03 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.24 Total: -123.28 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -82.31 2.62 -79.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961628869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.458 kcal (2) G-P(sol) polarization free energy of solvation -82.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds