Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36946 * 120.00236 * 2 1 4 4 H 1.07992 * 120.00066 * 203.30865 * 3 2 1 5 5 C 1.38813 * 119.99365 * 23.30590 * 3 2 1 6 6 N 1.31613 * 120.00157 * 14.00866 * 5 3 2 7 7 Si 1.86804 * 119.99641 * 194.00071 * 5 3 2 8 8 H 1.48501 * 109.46958 * 60.00484 * 7 5 3 9 9 H 1.48498 * 109.47262 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47423 * 300.00458 * 7 5 3 11 11 C 1.46501 * 120.00372 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88925 * 182.42501 * 11 2 1 13 13 C 1.55147 * 111.00553 * 306.35475 * 11 2 1 14 14 C 1.54337 * 103.02513 * 153.37577 * 13 11 2 15 15 N 1.47014 * 107.26407 * 338.13996 * 14 13 11 16 16 C 1.34776 * 125.65172 * 178.84889 * 15 14 13 17 17 O 1.21731 * 120.00370 * 179.69490 * 16 15 14 18 18 C 1.46398 * 119.99740 * 359.68752 * 16 15 14 19 19 N 1.37631 * 126.32691 * 0.05040 * 18 16 15 20 20 H 0.97000 * 125.55238 * 359.97438 * 19 18 16 21 21 C 1.35638 * 108.90004 * 179.97438 * 19 18 16 22 22 C 1.35120 * 109.22226 * 359.75259 * 21 19 18 23 23 C 1.39092 * 126.32862 * 179.97438 * 18 16 15 24 24 C 1.48180 * 126.63605 * 0.02562 * 23 18 16 25 25 C 1.39442 * 120.13275 * 129.99319 * 24 23 18 26 26 C 1.37996 * 119.86632 * 180.23417 * 25 24 23 27 27 C 1.38336 * 120.12814 * 359.49782 * 26 25 24 28 28 C 1.38337 * 120.26926 * 0.50620 * 27 26 25 29 29 C 1.37993 * 120.13255 * 359.74691 * 28 27 26 30 30 C 1.47426 * 108.70564 * 358.58338 * 15 14 13 31 31 H 1.08996 * 109.47005 * 275.16756 * 1 2 3 32 32 H 1.09003 * 109.46796 * 35.16938 * 1 2 3 33 33 H 1.08998 * 109.46733 * 155.17241 * 1 2 3 34 34 H 0.97002 * 119.99900 * 179.97438 * 6 5 3 35 35 H 1.09008 * 110.72074 * 271.93698 * 13 11 2 36 36 H 1.09008 * 110.72372 * 35.02970 * 13 11 2 37 37 H 1.08999 * 109.99071 * 218.66395 * 14 13 11 38 38 H 1.09005 * 109.77467 * 97.49594 * 14 13 11 39 39 H 1.08008 * 125.39308 * 180.02562 * 21 19 18 40 40 H 1.07999 * 126.10359 * 180.25258 * 22 21 19 41 41 H 1.07994 * 120.06767 * 359.95914 * 25 24 23 42 42 H 1.07997 * 119.92967 * 179.72806 * 26 25 24 43 43 H 1.08004 * 119.86517 * 180.23373 * 27 26 25 44 44 H 1.08001 * 119.93791 * 179.77107 * 28 27 26 45 45 H 1.07994 * 120.06727 * 179.97438 * 29 28 27 46 46 H 1.08996 * 110.36974 * 143.19371 * 30 15 14 47 47 H 1.09001 * 110.36837 * 265.41087 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1636 1.2241 -0.3701 5 6 1.5406 2.3390 0.4757 6 7 0.4277 2.2555 1.1733 7 14 2.3006 4.0092 0.1257 8 1 2.3742 4.2218 -1.3422 9 1 1.4640 5.0720 0.7388 10 1 3.6678 4.0616 0.7026 11 6 2.1976 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.7322 -2.1791 1.1674 14 6 2.0327 -3.5988 0.6421 15 7 2.0992 -3.5165 -0.8242 16 6 2.3642 -4.5422 -1.6574 17 8 2.3884 -4.3584 -2.8606 18 6 2.6231 -5.8773 -1.1155 19 7 2.6279 -6.2304 0.2147 20 1 2.4589 -5.6306 0.9581 21 6 2.9073 -7.5537 0.3170 22 6 3.0789 -8.0691 -0.9202 23 6 2.9084 -7.0236 -1.8498 24 6 3.0085 -7.1268 -3.3247 25 6 4.1170 -7.7375 -3.9100 26 6 4.2069 -7.8263 -5.2841 27 6 3.1952 -7.3202 -6.0803 28 6 2.0930 -6.7132 -5.5055 29 6 1.9943 -6.6138 -4.1327 30 6 1.8217 -2.1274 -1.2328 31 1 -0.3633 0.0926 1.0235 32 1 -0.3633 0.8401 -0.5920 33 1 -0.3633 -0.9327 -0.4315 34 1 0.0022 3.0613 1.5060 35 1 2.3047 -1.9706 2.0713 36 1 0.6649 -2.0550 1.3515 37 1 1.2374 -4.2823 0.9393 38 1 2.9880 -3.9439 1.0377 39 1 2.9769 -8.1088 1.2409 40 1 3.3077 -9.0981 -1.1549 41 1 4.9057 -8.1362 -3.2893 42 1 5.0671 -8.2952 -5.7387 43 1 3.2681 -7.3954 -7.1553 44 1 1.3080 -6.3166 -6.1323 45 1 1.1336 -6.1393 -3.6850 46 1 2.4388 -1.8531 -2.0884 47 1 0.7655 -2.0066 -1.4736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972713333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 77.993930 kcal Electronic energy + Delta-G solvation = -29033.402393 eV Core-core repulsion = 25183.016692 eV Total energy + Delta-G solvation = -3850.385701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53850 -39.34953 -38.71109 -37.38262 -34.95869 -32.68563 -31.75575 -30.81858 -30.22968 -29.96667 -28.69204 -27.74615 -26.12200 -24.36501 -22.96543 -22.46745 -22.41817 -21.17433 -20.70724 -19.47077 -19.28414 -17.67790 -17.13297 -16.59135 -16.12174 -16.00620 -15.21171 -15.00754 -14.85216 -14.63813 -14.27919 -13.77193 -13.68214 -13.53805 -13.39517 -13.25622 -13.01325 -12.86622 -12.68444 -12.55008 -12.44924 -12.26014 -12.05652 -11.44988 -11.10181 -11.02220 -10.96475 -10.84140 -10.59281 -10.56638 -10.36521 -10.04096 -9.96858 -9.87740 -9.38349 -8.75927 -8.68312 -8.62614 -8.46891 -7.99052 -6.88345 -5.83194 -3.31157 1.06325 1.57404 1.69209 2.61906 2.89577 3.14910 3.34190 3.39921 3.40573 3.41921 3.97107 4.40751 4.57577 4.72336 4.77560 4.93477 5.00418 5.02584 5.08398 5.14551 5.23219 5.25427 5.30534 5.47092 5.56902 5.60469 5.64072 5.69532 5.77006 5.87070 5.96096 6.10351 6.17846 6.19397 6.23452 6.36869 6.43857 6.50593 6.60112 6.64916 6.68163 6.71345 6.76288 6.85519 7.11735 7.21133 7.25471 7.60543 7.63849 7.71925 8.25264 8.29553 9.11584 9.73624 10.21949 11.21276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002630 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.440307 B =10645.726396 C =11721.638136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.149 4.149 14 C 0.091 3.909 15 N -0.613 5.613 16 C 0.594 3.406 17 O -0.520 6.520 18 C -0.029 4.029 19 N -0.541 5.541 20 H 0.420 0.580 21 C 0.016 3.984 22 C -0.196 4.196 23 C -0.050 4.050 24 C -0.015 4.015 25 C -0.106 4.106 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.063 4.063 30 C 0.087 3.913 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.002 0.998 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.171 0.829 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 -22.227 -2.765 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.303 5.303 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.189 4.189 14 C -0.033 4.033 15 N -0.347 5.347 16 C 0.383 3.617 17 O -0.397 6.397 18 C -0.143 4.143 19 N -0.141 5.141 20 H 0.263 0.737 21 C -0.119 4.119 22 C -0.220 4.220 23 C -0.059 4.059 24 C -0.016 4.016 25 C -0.124 4.124 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.143 4.143 29 C -0.082 4.082 30 C -0.037 4.037 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.189 0.811 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.094 0.906 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.761 -21.826 -3.253 22.385 hybrid contribution 0.236 1.172 0.514 1.301 sum 3.996 -20.653 -2.739 21.214 Atomic orbital electron populations 1.20828 0.82429 0.95707 0.99689 1.43798 1.01838 0.99787 1.84906 1.19172 0.98786 0.85277 1.36097 0.91259 1.25025 0.97900 0.98643 0.97632 1.70051 1.20152 1.27622 1.36964 0.86305 0.78418 0.83499 0.78136 1.20897 1.21579 1.20839 1.21406 0.96512 0.85881 0.89866 0.90254 1.23230 1.03204 0.91710 1.00778 1.22218 0.99591 1.00453 0.81071 1.48406 1.69546 1.10107 1.06671 1.16642 0.77594 0.81705 0.85752 1.90882 1.52408 1.83026 1.13336 1.20502 1.15833 0.94901 0.83105 1.42701 1.54032 1.09925 1.07462 0.73666 1.21928 1.06236 0.83849 0.99900 1.20869 1.10719 0.99273 0.91126 1.18534 1.03986 0.91484 0.91890 1.18081 0.94789 0.98731 0.90006 1.21100 0.97133 0.99496 0.94705 1.20954 0.98958 1.01366 0.93584 1.21124 0.94440 0.98990 0.99463 1.21033 0.98461 0.99925 0.94885 1.21132 0.98243 0.95664 0.93121 1.23045 1.01414 0.78655 1.00552 0.94732 0.93902 0.97946 0.93543 0.90220 0.90192 0.92192 0.92091 0.81139 0.83848 0.86317 0.86406 0.86566 0.86341 0.86304 0.90615 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 7.61 59.85 0.46 4.12 16 2 N -0.58 -13.79 2.96 -171.03 -0.51 -14.29 16 3 C -0.26 -6.97 9.60 -15.05 -0.14 -7.12 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 5 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 6 N -0.90 -25.35 10.79 55.49 0.60 -24.75 16 7 Si 0.91 21.31 29.58 -169.99 -5.03 16.28 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.33 3.54 -65.78 -0.23 3.10 16 12 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 13 C -0.15 -2.31 6.51 -24.90 -0.16 -2.47 16 14 C 0.09 1.14 5.11 -3.06 -0.02 1.12 16 15 N -0.61 -9.62 3.33 -172.15 -0.57 -10.19 16 16 C 0.59 9.85 7.79 -12.98 -0.10 9.75 16 17 O -0.52 -10.06 13.65 5.16 0.07 -9.99 16 18 C -0.03 -0.41 6.91 -81.66 -0.56 -0.97 16 19 N -0.54 -5.56 5.61 -9.24 -0.05 -5.61 16 20 H 0.42 3.53 4.92 -40.82 -0.20 3.33 16 21 C 0.02 0.14 11.86 -16.98 -0.20 -0.06 16 22 C -0.20 -2.03 10.74 -39.67 -0.43 -2.46 16 23 C -0.05 -0.68 5.67 -104.47 -0.59 -1.27 16 24 C -0.02 -0.22 5.28 -104.91 -0.55 -0.77 16 25 C -0.11 -1.30 9.74 -39.22 -0.38 -1.68 16 26 C -0.13 -1.46 10.03 -39.63 -0.40 -1.86 16 27 C -0.12 -1.40 10.04 -39.51 -0.40 -1.79 16 28 C -0.12 -1.60 10.03 -39.63 -0.40 -2.00 16 29 C -0.06 -0.92 7.63 -39.22 -0.30 -1.22 16 30 C 0.09 1.58 6.46 -2.52 -0.02 1.56 16 31 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 32 H 0.04 1.09 7.39 -51.93 -0.38 0.70 16 33 H 0.00 0.04 6.34 -51.93 -0.33 -0.29 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.08 1.32 7.08 -51.92 -0.37 0.95 16 37 H 0.06 0.63 7.26 -51.93 -0.38 0.26 16 38 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 39 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.83 7.32 -52.49 -0.38 1.44 16 46 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 47 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.69 376.52 -10.79 -42.48 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.46 Total: 4.33 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.52 Total: -3.93 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.53 Total: -54.85 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.69 -10.79 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972713333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.470 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds