Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 120.00083 * 2 1 4 4 H 1.08000 * 119.99617 * 203.24532 * 3 2 1 5 5 C 1.38814 * 120.00206 * 23.24318 * 3 2 1 6 6 N 1.31619 * 119.99476 * 13.77306 * 5 3 2 7 7 Si 1.86794 * 120.00128 * 193.76993 * 5 3 2 8 8 H 1.48505 * 109.47171 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47153 * 120.00413 * 7 5 3 10 10 H 1.48505 * 109.47004 * 240.00325 * 7 5 3 11 11 C 1.46497 * 119.99706 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88445 * 183.88058 * 11 2 1 13 13 C 1.55160 * 111.00499 * 60.00046 * 11 2 1 14 14 C 1.54326 * 102.94036 * 206.42374 * 13 11 2 15 15 N 1.47022 * 107.27233 * 22.19131 * 14 13 11 16 16 C 1.34779 * 125.64510 * 181.02147 * 15 14 13 17 17 O 1.21731 * 119.99800 * 180.02562 * 16 15 14 18 18 C 1.46396 * 120.00284 * 0.03078 * 16 15 14 19 19 N 1.37633 * 126.32356 * 359.96769 * 18 16 15 20 20 H 0.96991 * 125.55485 * 0.02647 * 19 18 16 21 21 C 1.35648 * 108.89387 * 180.02562 * 19 18 16 22 22 C 1.35121 * 109.22329 * 359.72288 * 21 19 18 23 23 C 1.39090 * 126.32877 * 180.02562 * 18 16 15 24 24 C 1.48182 * 126.63144 * 359.97106 * 23 18 16 25 25 C 1.39449 * 120.12766 * 130.00554 * 24 23 18 26 26 C 1.37993 * 119.86402 * 180.02562 * 25 24 23 27 27 C 1.38341 * 120.13248 * 359.97065 * 26 25 24 28 28 C 1.38342 * 120.26658 * 0.02562 * 27 26 25 29 29 C 1.37989 * 120.12896 * 0.02562 * 28 27 26 30 30 C 1.47423 * 108.70208 * 1.28732 * 15 14 13 31 31 H 1.09005 * 109.46616 * 275.16067 * 1 2 3 32 32 H 1.08991 * 109.46988 * 35.15733 * 1 2 3 33 33 H 1.08995 * 109.47168 * 155.16018 * 1 2 3 34 34 H 0.97006 * 119.99526 * 180.02562 * 6 5 3 35 35 H 1.09001 * 110.71969 * 88.06257 * 13 11 2 36 36 H 1.09002 * 110.87163 * 324.85419 * 13 11 2 37 37 H 1.08999 * 109.88130 * 262.77273 * 14 13 11 38 38 H 1.08994 * 110.01307 * 141.68475 * 14 13 11 39 39 H 1.07996 * 125.38671 * 179.97438 * 21 19 18 40 40 H 1.07997 * 126.10111 * 180.30686 * 22 21 19 41 41 H 1.07997 * 120.07068 * 359.97438 * 25 24 23 42 42 H 1.08000 * 119.92851 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.86854 * 179.74620 * 27 26 25 44 44 H 1.07994 * 119.93233 * 179.97438 * 28 27 26 45 45 H 1.08001 * 120.06663 * 179.97438 * 29 28 27 46 46 H 1.08994 * 110.36236 * 94.48463 * 30 15 14 47 47 H 1.09008 * 110.36230 * 216.80392 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2238 -0.3692 5 6 1.5402 2.3393 0.4744 6 7 0.4241 2.2565 1.1671 7 14 2.3040 4.0088 0.1298 8 1 3.5472 3.8303 -0.6627 9 1 1.3439 4.8438 -0.6357 10 1 2.6286 4.6793 1.4145 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.8483 -2.1131 -1.2535 14 6 2.1062 -3.5589 -0.7795 15 7 2.0264 -3.5578 0.6886 16 6 2.2130 -4.6281 1.4862 17 8 2.1217 -4.5102 2.6943 18 6 2.5257 -5.9325 0.8996 19 7 2.6587 -6.2126 -0.4413 20 1 2.5604 -5.5728 -1.1636 21 6 2.9496 -7.5293 -0.5882 22 6 3.0145 -8.1093 0.6305 23 6 2.7422 -7.1178 1.5944 24 6 2.7012 -7.3012 3.0642 25 6 1.9462 -8.3336 3.6200 26 6 1.9115 -8.4991 4.9895 27 6 2.6243 -7.6438 5.8107 28 6 3.3751 -6.6179 5.2652 29 6 3.4167 -6.4418 3.8972 30 6 1.7020 -2.1935 1.1433 31 1 -0.3633 0.0924 1.0236 32 1 -0.3633 0.8401 -0.5917 33 1 -0.3633 -0.9325 -0.4317 34 1 -0.0020 3.0625 1.4983 35 1 2.5043 -1.8572 -2.0855 36 1 0.8032 -1.9795 -1.5329 37 1 3.0979 -3.8816 -1.0965 38 1 1.3500 -4.2270 -1.1914 39 1 3.1087 -8.0334 -1.5300 40 1 3.2332 -9.1479 0.8301 41 1 1.3891 -9.0017 2.9800 42 1 1.3268 -9.2980 5.4211 43 1 2.5908 -7.7747 6.8822 44 1 3.9291 -5.9531 5.9113 45 1 4.0029 -5.6403 3.4724 46 1 0.6263 -2.0857 1.2823 47 1 2.2297 -1.9670 2.0699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972713334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = 78.164859 kcal Electronic energy + Delta-G solvation = -29071.340318 eV Core-core repulsion = 25220.962029 eV Total energy + Delta-G solvation = -3850.378289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52412 -39.32283 -38.68554 -37.36287 -34.95229 -32.66997 -31.75362 -30.79246 -30.21897 -29.95294 -28.67368 -27.71983 -26.12837 -24.34696 -22.95170 -22.46524 -22.40325 -21.15507 -20.69730 -19.45735 -19.27391 -17.65923 -17.13313 -16.57132 -16.10952 -15.97899 -15.13869 -15.01885 -14.90333 -14.62590 -14.25912 -13.73940 -13.65295 -13.54493 -13.35039 -13.22906 -12.98302 -12.84190 -12.71684 -12.49134 -12.40477 -12.24280 -12.08205 -11.57991 -11.07979 -10.98591 -10.93771 -10.86785 -10.58036 -10.57636 -10.36443 -10.00891 -9.93577 -9.86120 -9.36947 -8.73511 -8.68018 -8.61956 -8.43131 -7.97204 -6.88003 -5.82718 -3.31200 1.08544 1.60140 1.71190 2.63159 2.90983 3.16829 3.32514 3.40056 3.41857 3.43555 3.99746 4.40124 4.59296 4.73503 4.75802 4.94375 4.99414 5.02969 5.10293 5.14477 5.25004 5.26890 5.29149 5.49461 5.58378 5.62984 5.66141 5.72235 5.75476 5.86742 5.97564 6.12831 6.18750 6.20693 6.24607 6.37720 6.45667 6.51654 6.61719 6.66457 6.68866 6.73347 6.76886 6.87666 7.14413 7.21983 7.25130 7.62987 7.67308 7.72082 8.27069 8.31329 9.11471 9.73597 10.22224 11.21556 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016117 B = 0.002699 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.883778 B =10370.170217 C =11554.602408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.901 5.901 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.092 3.908 15 N -0.614 5.614 16 C 0.593 3.407 17 O -0.519 6.519 18 C -0.029 4.029 19 N -0.541 5.541 20 H 0.420 0.580 21 C 0.015 3.985 22 C -0.195 4.195 23 C -0.050 4.050 24 C -0.016 4.016 25 C -0.106 4.106 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.063 4.063 30 C 0.090 3.910 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.002 0.998 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.171 0.829 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -22.061 -2.797 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.303 5.303 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.545 5.545 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.032 4.032 15 N -0.349 5.349 16 C 0.382 3.618 17 O -0.395 6.395 18 C -0.143 4.143 19 N -0.142 5.142 20 H 0.263 0.737 21 C -0.120 4.120 22 C -0.220 4.220 23 C -0.059 4.059 24 C -0.017 4.017 25 C -0.125 4.125 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.143 4.143 29 C -0.081 4.081 30 C -0.034 4.034 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.188 0.812 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.175 -21.697 -2.146 22.199 hybrid contribution 0.142 1.175 -0.631 1.342 sum 4.317 -20.521 -2.777 21.154 Atomic orbital electron populations 1.20825 0.82412 0.95594 0.99802 1.43865 1.01879 0.99809 1.84773 1.19237 0.98810 0.85119 1.36142 0.91145 1.25076 0.97902 0.98745 0.97584 1.70082 1.19894 1.27427 1.37112 0.86158 0.78536 0.84042 0.77609 1.20241 1.21522 1.21608 1.21496 0.96475 0.85793 0.89940 0.90245 1.23227 1.03149 0.91890 1.00927 1.22178 0.99579 1.00140 0.81266 1.48465 1.69629 1.10044 1.06731 1.16662 0.77809 0.81349 0.86003 1.90890 1.51934 1.83853 1.12786 1.20532 1.15608 0.95237 0.82900 1.42689 1.54075 1.10096 1.07311 0.73729 1.21917 1.06353 0.83750 0.99987 1.20868 1.10511 0.99568 0.91009 1.18538 1.04023 0.91312 0.92011 1.18080 0.97700 0.95839 0.90057 1.21094 0.98786 0.97674 0.94897 1.20951 1.00444 1.00019 0.93487 1.21127 0.97666 0.95771 0.99427 1.21040 1.00039 0.98130 0.95066 1.21141 0.97394 0.96579 0.93002 1.23163 1.01138 0.78691 1.00414 0.94748 0.93845 0.97988 0.93580 0.90341 0.90224 0.92096 0.92296 0.81170 0.83859 0.86348 0.86422 0.86561 0.86304 0.86254 0.91184 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.56 59.85 0.45 4.14 16 2 N -0.58 -13.77 2.96 -170.90 -0.51 -14.27 16 3 C -0.26 -6.93 9.60 -15.06 -0.14 -7.07 16 4 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 5 C 0.01 0.17 5.08 -17.43 -0.09 0.08 16 6 N -0.90 -25.63 10.77 55.49 0.60 -25.03 16 7 Si 0.91 21.24 29.58 -169.99 -5.03 16.22 16 8 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.31 3.55 -65.66 -0.23 3.08 16 12 H 0.08 1.54 7.96 -51.93 -0.41 1.12 16 13 C -0.15 -2.22 6.49 -24.89 -0.16 -2.38 16 14 C 0.09 1.13 5.11 -3.06 -0.02 1.12 16 15 N -0.61 -9.84 3.32 -172.02 -0.57 -10.41 16 16 C 0.59 10.07 7.79 -12.98 -0.10 9.97 16 17 O -0.52 -10.37 13.64 5.16 0.07 -10.30 16 18 C -0.03 -0.40 6.90 -81.66 -0.56 -0.97 16 19 N -0.54 -5.57 5.61 -9.24 -0.05 -5.62 16 20 H 0.42 3.46 4.91 -40.82 -0.20 3.26 16 21 C 0.02 0.13 11.86 -16.97 -0.20 -0.07 16 22 C -0.20 -2.05 10.74 -39.67 -0.43 -2.48 16 23 C -0.05 -0.69 5.67 -104.47 -0.59 -1.28 16 24 C -0.02 -0.23 5.28 -104.91 -0.55 -0.79 16 25 C -0.11 -1.33 9.74 -39.22 -0.38 -1.71 16 26 C -0.13 -1.51 10.03 -39.63 -0.40 -1.90 16 27 C -0.12 -1.44 10.04 -39.51 -0.40 -1.84 16 28 C -0.12 -1.66 10.03 -39.63 -0.40 -2.05 16 29 C -0.06 -0.94 7.62 -39.22 -0.30 -1.24 16 30 C 0.09 1.70 6.46 -2.41 -0.02 1.68 16 31 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 32 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 33 H 0.00 0.03 6.37 -51.93 -0.33 -0.30 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 37 H 0.06 0.62 7.09 -51.93 -0.37 0.25 16 38 H 0.06 0.61 7.22 -51.93 -0.38 0.23 16 39 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.89 7.32 -52.49 -0.38 1.51 16 46 H 0.07 1.43 6.96 -51.93 -0.36 1.06 16 47 H 0.08 1.59 8.03 -51.92 -0.42 1.18 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -32.10 376.48 -10.79 -42.89 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.46 Total: 4.55 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -4.52 Total: -3.70 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.53 Total: -55.33 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.10 -10.79 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972713334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.054 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds