Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99821 * 2 1 4 4 H 1.08000 * 119.99886 * 204.31675 * 3 2 1 5 5 C 1.38803 * 120.00112 * 24.32215 * 3 2 1 6 6 N 1.31625 * 120.00244 * 15.74795 * 5 3 2 7 7 Si 1.86806 * 120.00371 * 195.74801 * 5 3 2 8 8 H 1.48506 * 109.46659 * 59.99734 * 7 5 3 9 9 H 1.48489 * 109.47477 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46923 * 300.00147 * 7 5 3 11 11 C 1.46499 * 119.99817 * 180.02562 * 2 1 3 12 12 C 1.53036 * 109.45871 * 299.99688 * 11 2 1 13 13 C 1.53201 * 109.31326 * 181.38907 * 12 11 2 14 14 N 1.46925 * 108.77539 * 305.36569 * 13 12 11 15 15 C 1.34776 * 120.62798 * 233.58611 * 14 13 12 16 16 O 1.21539 * 120.00333 * 5.42340 * 15 14 13 17 17 C 1.47894 * 119.99508 * 185.41845 * 15 14 13 18 18 C 1.40598 * 119.72851 * 213.55169 * 17 15 14 19 19 C 1.35847 * 120.94825 * 180.02562 * 18 17 15 20 20 C 1.40485 * 119.88268 * 359.95695 * 19 18 17 21 21 C 1.40489 * 121.83766 * 179.97438 * 20 19 18 22 22 N 1.31214 * 119.93896 * 180.02562 * 21 20 19 23 23 C 1.32554 * 122.80503 * 0.02562 * 22 21 20 24 24 C 1.36226 * 121.84768 * 359.97438 * 23 22 21 25 25 C 1.40765 * 118.67388 * 0.02562 * 24 23 22 26 26 C 1.38524 * 119.72862 * 33.57601 * 17 15 14 27 27 C 1.46924 * 118.73810 * 53.85563 * 14 13 12 28 28 C 1.53035 * 109.46460 * 60.06867 * 11 2 1 29 29 H 1.08997 * 109.46917 * 272.87076 * 1 2 3 30 30 H 1.09004 * 109.46973 * 32.87283 * 1 2 3 31 31 H 1.09000 * 109.47225 * 152.86742 * 1 2 3 32 32 H 0.97003 * 119.99990 * 179.97438 * 6 5 3 33 33 H 1.09008 * 109.44762 * 180.02562 * 11 2 1 34 34 H 1.09000 * 109.49755 * 61.43773 * 12 11 2 35 35 H 1.09006 * 109.52946 * 301.35236 * 12 11 2 36 36 H 1.09001 * 109.58583 * 185.57656 * 13 12 11 37 37 H 1.08998 * 109.70343 * 65.22187 * 13 12 11 38 38 H 1.07998 * 119.52247 * 0.02562 * 18 17 15 39 39 H 1.08005 * 120.05390 * 179.97438 * 19 18 17 40 40 H 1.07998 * 120.02874 * 0.04740 * 21 20 19 41 41 H 1.08002 * 119.07819 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.66090 * 180.27397 * 24 23 22 43 43 H 1.08001 * 120.36691 * 359.97438 * 26 17 15 44 44 H 1.09007 * 109.58145 * 65.92846 * 27 14 13 45 45 H 1.08994 * 109.59032 * 186.35389 * 27 14 13 46 46 H 1.09002 * 109.49570 * 298.56165 * 28 11 2 47 47 H 1.09003 * 109.50016 * 58.65872 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1578 1.2274 -0.3851 5 6 1.5480 2.3346 0.4951 6 7 0.4652 2.2427 1.2377 7 14 2.2751 4.0112 0.1075 8 1 2.2868 4.2176 -1.3631 9 1 1.4528 5.0678 0.7497 10 1 3.6641 4.0807 0.6283 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2487 13 6 2.6213 -3.3818 1.2624 14 7 2.3850 -4.0910 -0.0024 15 6 1.9588 -5.3697 -0.0035 16 8 1.6719 -5.9155 1.0439 17 6 1.8402 -6.1084 -1.2792 18 6 0.8226 -7.0654 -1.4386 19 6 0.6912 -7.7586 -2.5995 20 6 1.5802 -7.5212 -3.6610 21 6 1.4823 -8.2146 -4.8789 22 7 2.3332 -7.9635 -5.8457 23 6 3.3048 -7.0689 -5.7328 24 6 3.4854 -6.3436 -4.5940 25 6 2.6113 -6.5570 -3.5115 26 6 2.7329 -5.8522 -2.3069 27 6 2.6279 -3.3818 -1.2660 28 6 1.8289 -2.0698 -1.2514 29 1 -0.3633 0.0515 1.0264 30 1 -0.3633 0.8632 -0.5578 31 1 -0.3634 -0.9146 -0.4687 32 1 0.0449 3.0455 1.5840 33 1 3.2691 -1.0691 0.0000 34 1 0.7604 -2.2927 1.2363 35 1 2.0685 -1.4910 2.1394 36 1 2.2899 -4.0010 2.0960 37 1 3.6846 -3.1663 1.3674 38 1 0.1355 -7.2520 -0.6265 39 1 -0.0956 -8.4908 -2.7061 40 1 0.7073 -8.9535 -5.0193 41 1 3.9721 -6.9106 -6.5672 42 1 4.2808 -5.6164 -4.5245 43 1 3.5135 -5.1164 -2.1814 44 1 3.6914 -3.1641 -1.3642 45 1 2.3009 -4.0010 -2.1013 46 1 0.7617 -2.2911 -1.2403 47 1 2.0711 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985737131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = 58.851589 kcal Electronic energy + Delta-G solvation = -29116.854937 eV Core-core repulsion = 25265.639162 eV Total energy + Delta-G solvation = -3851.215775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34659 -40.09626 -37.79968 -37.12014 -35.19855 -33.49518 -32.42206 -31.71138 -30.76592 -29.97065 -29.55204 -26.05744 -25.83886 -24.48694 -24.09523 -23.19842 -22.43482 -22.07370 -20.39857 -18.97693 -18.19776 -17.53761 -17.31764 -16.76395 -16.19451 -15.92827 -15.33533 -15.18791 -15.00319 -14.50521 -14.28256 -14.10908 -14.05553 -13.86886 -13.56769 -13.36474 -13.09708 -12.98181 -12.80992 -12.50169 -12.36960 -12.06939 -11.75721 -11.52916 -11.36227 -11.01392 -10.92121 -10.78892 -10.56523 -10.44687 -10.29389 -10.20057 -10.01696 -9.89051 -9.78676 -9.61722 -9.36963 -8.62877 -8.53093 -8.38954 -6.76265 -5.76045 -3.22421 -0.12241 0.40780 1.49146 2.31320 2.86724 3.11378 3.35903 3.42178 3.42591 3.72254 4.03500 4.13389 4.19819 4.41976 4.45720 4.48411 4.69156 4.71390 4.92122 4.99236 5.16393 5.19959 5.27608 5.32217 5.32831 5.34531 5.43532 5.52888 5.57582 5.71400 5.72092 5.81950 5.89817 5.95039 5.99244 6.10149 6.19701 6.23772 6.31058 6.38841 6.48835 6.55779 6.74900 6.93227 6.97003 7.31274 7.38339 7.61065 7.68061 7.76855 8.07896 8.37777 9.20014 9.84105 10.34627 11.28900 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.002644 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.584769 B =10587.224499 C =11547.743005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.594 5.594 3 C -0.259 4.259 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.596 5.596 15 C 0.553 3.447 16 O -0.539 6.539 17 C -0.098 4.098 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.099 4.099 21 C 0.144 3.856 22 N -0.485 5.485 23 C 0.072 3.928 24 C -0.145 4.145 25 C -0.033 4.033 26 C -0.080 4.080 27 C 0.090 3.910 28 C -0.147 4.147 29 H 0.027 0.973 30 H 0.039 0.961 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -19.971 -10.421 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.315 5.315 3 C -0.389 4.389 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.009 4.009 14 N -0.328 5.328 15 C 0.341 3.659 16 O -0.417 6.417 17 C -0.102 4.102 18 C -0.091 4.091 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.028 4.028 22 N -0.193 5.193 23 C -0.071 4.071 24 C -0.165 4.165 25 C -0.038 4.038 26 C -0.099 4.099 27 C -0.032 4.032 28 C -0.188 4.188 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.728 -20.424 -10.613 23.317 hybrid contribution 0.361 1.635 0.676 1.806 sum 4.089 -18.789 -9.938 21.645 Atomic orbital electron populations 1.20718 0.82961 0.95630 0.98990 1.43923 1.01645 1.00169 1.85757 1.19132 0.99258 0.85668 1.34828 0.91583 1.25027 0.98311 0.98540 0.97588 1.70067 1.22122 1.27591 1.34942 0.86376 0.78357 0.84021 0.78010 1.21091 1.21673 1.20931 1.20292 0.96026 0.86106 0.90516 1.22508 1.00017 0.94263 1.01669 1.21771 0.99961 0.93939 0.85214 1.48082 1.65003 1.11272 1.08467 1.18293 0.77398 0.81684 0.88478 1.90770 1.49895 1.68197 1.32820 1.20079 0.97644 0.98251 0.94221 1.20900 0.96720 0.93576 0.97927 1.20900 0.98552 0.99688 0.92074 1.19158 0.96663 0.97771 0.96534 1.23251 0.96014 0.96171 0.87370 1.67391 1.03749 1.16269 1.31915 1.22201 0.95337 0.92289 0.97255 1.21995 0.99790 1.01125 0.93600 1.18104 0.95277 0.95793 0.94631 1.21789 0.99110 0.97768 0.91206 1.22522 1.00388 0.94667 0.85669 1.22568 1.00147 0.94534 1.01503 0.95448 0.94223 0.98245 0.93677 0.91885 0.92179 0.90431 0.89449 0.91424 0.84441 0.84245 0.81811 0.82826 0.84068 0.83403 0.90988 0.89094 0.91861 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 8.07 59.85 0.48 4.38 16 2 N -0.59 -14.21 2.80 -173.44 -0.49 -14.70 16 3 C -0.26 -6.88 9.54 -15.06 -0.14 -7.03 16 4 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 5 C 0.00 0.12 5.02 -17.43 -0.09 0.03 16 6 N -0.90 -26.00 10.97 55.49 0.61 -25.39 16 7 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.18 3.39 2.55 -67.89 -0.17 3.21 16 12 C -0.14 -2.56 5.34 -26.61 -0.14 -2.70 16 13 C 0.11 1.67 6.44 -3.71 -0.02 1.65 16 14 N -0.60 -8.25 2.97 -173.60 -0.51 -8.76 16 15 C 0.55 8.01 7.39 -12.31 -0.09 7.92 16 16 O -0.54 -9.45 16.18 5.33 0.09 -9.36 16 17 C -0.10 -1.15 5.37 -104.95 -0.56 -1.71 16 18 C -0.07 -0.76 9.49 -39.55 -0.38 -1.13 16 19 C -0.09 -0.77 9.77 -39.59 -0.39 -1.16 16 20 C -0.10 -0.91 5.75 -106.78 -0.61 -1.53 16 21 C 0.14 1.21 11.04 -16.97 -0.19 1.02 16 22 N -0.49 -4.75 10.29 -13.14 -0.14 -4.88 16 23 C 0.07 0.61 11.07 -17.96 -0.20 0.41 16 24 C -0.15 -1.18 9.88 -39.35 -0.39 -1.57 16 25 C -0.03 -0.32 5.74 -106.83 -0.61 -0.93 16 26 C -0.08 -0.80 7.13 -38.78 -0.28 -1.07 16 27 C 0.09 1.09 4.76 -3.49 -0.02 1.07 16 28 C -0.15 -2.30 5.33 -26.39 -0.14 -2.44 16 29 H 0.03 0.72 7.44 -51.93 -0.39 0.33 16 30 H 0.04 1.03 7.35 -51.93 -0.38 0.65 16 31 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.19 7.87 -51.92 -0.41 0.78 16 34 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.14 1.39 7.95 -52.49 -0.42 0.97 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.15 1.25 5.77 -52.49 -0.30 0.94 16 44 H 0.07 0.75 8.04 -51.92 -0.42 0.33 16 45 H 0.09 0.96 4.29 -51.93 -0.22 0.74 16 46 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -32.64 373.25 -10.28 -42.91 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.49 Total: -0.26 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.94 Total: -1.57 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.53 Total: -53.73 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.64 -10.28 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985737131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.766 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds