Wall clock time and date at job start Sat Apr 11 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99779 * 2 1 4 4 H 1.08000 * 119.99833 * 200.35750 * 3 2 1 5 5 C 1.38806 * 120.00150 * 20.36742 * 3 2 1 6 6 N 1.31617 * 120.00403 * 20.74099 * 5 3 2 7 7 Si 1.86803 * 119.99872 * 200.74453 * 5 3 2 8 8 H 1.48503 * 109.46886 * 59.99799 * 7 5 3 9 9 H 1.48503 * 109.47279 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47100 * 299.99834 * 7 5 3 11 11 C 1.46496 * 119.99856 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46106 * 300.00277 * 11 2 1 13 13 C 1.53192 * 109.31307 * 181.37328 * 12 11 2 14 14 N 1.46930 * 108.77361 * 305.36543 * 13 12 11 15 15 C 1.34776 * 120.62752 * 233.58723 * 14 13 12 16 16 O 1.21510 * 120.00323 * 10.75754 * 15 14 13 17 17 C 1.48275 * 119.99969 * 190.76105 * 15 14 13 18 18 C 1.40283 * 119.23752 * 188.51774 * 17 15 14 19 19 C 1.36512 * 119.81092 * 179.97438 * 18 17 15 20 20 C 1.40755 * 118.24397 * 359.97438 * 19 18 17 21 21 C 1.40420 * 121.26828 * 180.27658 * 20 19 18 22 22 C 1.36133 * 119.64387 * 180.29595 * 21 20 19 23 23 C 1.39433 * 120.91489 * 359.40618 * 22 21 20 24 24 C 1.35997 * 121.08649 * 0.32208 * 23 22 21 25 25 C 1.40825 * 119.73646 * 359.97438 * 24 23 22 26 26 N 1.31879 * 119.23949 * 8.49401 * 17 15 14 27 27 C 1.46917 * 118.74195 * 53.86018 * 14 13 12 28 28 C 1.53042 * 109.44778 * 60.06406 * 11 2 1 29 29 H 1.09000 * 109.47354 * 275.48758 * 1 2 3 30 30 H 1.09001 * 109.46767 * 35.48467 * 1 2 3 31 31 H 1.08995 * 109.47157 * 155.48216 * 1 2 3 32 32 H 0.96998 * 120.00154 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.46053 * 180.02562 * 11 2 1 34 34 H 1.08993 * 109.49854 * 61.41911 * 12 11 2 35 35 H 1.08996 * 109.52164 * 301.33987 * 12 11 2 36 36 H 1.08994 * 109.58726 * 185.57749 * 13 12 11 37 37 H 1.09003 * 109.70824 * 65.22015 * 13 12 11 38 38 H 1.07998 * 120.09431 * 359.97438 * 18 17 15 39 39 H 1.08000 * 120.87307 * 180.02562 * 19 18 17 40 40 H 1.07993 * 120.17928 * 359.96955 * 21 20 19 41 41 H 1.08003 * 119.54225 * 179.68158 * 22 21 20 42 42 H 1.08004 * 119.45686 * 180.30075 * 23 22 21 43 43 H 1.07995 * 120.12963 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.58775 * 65.92534 * 27 14 13 45 45 H 1.08997 * 109.58919 * 186.35580 * 27 14 13 46 46 H 1.09004 * 109.49631 * 298.56908 * 28 11 2 47 47 H 1.09000 * 109.50058 * 58.66875 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2152 -0.3254 5 6 1.5207 2.3504 0.4184 6 7 0.4499 2.2827 1.1807 7 14 2.1940 4.0138 -0.1006 8 1 2.1823 4.1121 -1.5823 9 1 1.3482 5.0912 0.4732 10 1 3.5864 4.1605 0.3942 11 6 2.1975 -1.2687 -0.0006 12 6 1.8275 -2.0716 1.2487 13 6 2.6209 -3.3820 1.2621 14 7 2.3843 -4.0910 -0.0029 15 6 1.9579 -5.3695 -0.0041 16 8 1.5791 -5.8846 1.0292 17 6 1.9510 -6.1476 -1.2663 18 6 1.3398 -7.4100 -1.2897 19 6 1.3263 -8.1362 -2.4456 20 6 1.9348 -7.5821 -3.5874 21 6 1.9526 -8.2712 -4.8108 22 6 2.5557 -7.7068 -5.8928 23 6 3.1465 -6.4467 -5.8075 24 6 3.1438 -5.7474 -4.6410 25 6 2.5355 -6.2994 -3.4972 26 7 2.5193 -5.6366 -2.3411 27 6 2.6273 -3.3818 -1.2664 28 6 1.8286 -2.0695 -1.2515 29 1 -0.3634 0.0983 1.0229 30 1 -0.3633 0.8368 -0.5966 31 1 -0.3633 -0.9350 -0.4264 32 1 0.0102 3.0965 1.4727 33 1 3.2691 -1.0694 0.0000 34 1 0.7603 -2.2926 1.2363 35 1 2.0686 -1.4913 2.1393 36 1 2.2895 -4.0013 2.0956 37 1 3.6843 -3.1668 1.3670 38 1 0.8813 -7.8063 -0.3958 39 1 0.8602 -9.1097 -2.4830 40 1 1.4949 -9.2460 -4.8914 41 1 2.5730 -8.2405 -6.8316 42 1 3.6143 -6.0190 -6.6820 43 1 3.6064 -4.7728 -4.5922 44 1 3.6909 -3.1642 -1.3647 45 1 2.3001 -4.0008 -2.1017 46 1 0.7612 -2.2905 -1.2403 47 1 2.0708 -1.4875 -2.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985765663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:43 Heat of formation + Delta-G solvation = 67.514642 kcal Electronic energy + Delta-G solvation = -29211.365305 eV Core-core repulsion = 25360.525188 eV Total energy + Delta-G solvation = -3850.840117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39734 -39.77133 -37.64497 -37.04451 -35.09402 -33.93348 -32.17192 -31.22600 -30.58939 -30.17584 -29.58528 -26.00866 -25.84577 -24.42720 -23.96156 -22.84735 -22.35597 -22.02282 -20.37877 -18.87038 -18.29106 -17.77070 -17.12690 -16.69103 -16.01804 -15.54192 -15.43931 -14.94044 -14.92673 -14.64905 -14.33269 -14.02349 -13.89638 -13.58429 -13.50920 -13.31743 -13.22209 -12.98004 -12.40881 -12.24676 -11.99482 -11.93628 -11.81524 -11.49835 -11.42874 -10.95223 -10.89846 -10.74565 -10.70601 -10.40036 -10.28112 -10.21239 -10.09477 -9.78181 -9.61562 -9.13807 -9.07915 -8.62074 -8.48237 -8.33632 -6.72006 -5.68943 -3.09736 -0.12270 0.36101 1.59304 2.20662 3.01887 3.08173 3.41705 3.47875 3.48985 3.75336 3.83695 4.19474 4.36801 4.45375 4.52110 4.54169 4.73480 4.79323 4.97217 5.08578 5.31909 5.38597 5.39964 5.43634 5.53922 5.58248 5.63550 5.65699 5.71728 5.83806 5.86422 5.97136 6.03432 6.05092 6.10104 6.23391 6.35721 6.38765 6.47143 6.54587 6.62164 6.72051 6.84982 7.06738 7.09124 7.34310 7.38450 7.58188 7.74268 7.84748 8.17750 8.43122 9.27019 9.93265 10.42639 11.36007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002744 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.002910 B =10203.194411 C =11403.548617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.902 5.902 7 Si 0.899 3.101 8 H -0.285 1.285 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.178 3.822 12 C -0.143 4.143 13 C 0.111 3.889 14 N -0.581 5.581 15 C 0.564 3.436 16 O -0.540 6.540 17 C 0.124 3.876 18 C -0.124 4.124 19 C -0.062 4.062 20 C -0.089 4.089 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.105 4.105 24 C -0.084 4.084 25 C 0.117 3.883 26 N -0.429 5.429 27 C 0.083 3.917 28 C -0.147 4.147 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.252 0.748 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.064 0.936 45 H 0.133 0.867 46 H 0.057 0.943 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -23.217 -13.035 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.316 5.316 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.546 5.546 7 Si 0.729 3.271 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.070 3.930 12 C -0.184 4.184 13 C -0.011 4.011 14 N -0.311 5.311 15 C 0.349 3.651 16 O -0.417 6.417 17 C -0.029 4.029 18 C -0.145 4.145 19 C -0.088 4.088 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.005 4.005 26 N -0.141 5.141 27 C -0.040 4.040 28 C -0.187 4.187 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.082 0.918 45 H 0.149 0.851 46 H 0.076 0.924 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.057 -22.459 -12.424 25.985 hybrid contribution -0.145 0.339 -0.246 0.443 sum 3.912 -22.121 -12.670 25.791 Atomic orbital electron populations 1.20714 0.82998 0.95336 0.99325 1.43985 1.01660 1.00301 1.85659 1.19158 0.97077 0.84901 1.37407 0.91431 1.24896 0.98518 0.98150 0.98156 1.70115 1.22629 1.26963 1.34929 0.86419 0.78112 0.84106 0.78471 1.21210 1.21773 1.21003 1.20320 0.95918 0.85944 0.90823 1.22494 0.99961 0.94300 1.01605 1.21801 0.99926 0.94022 0.85374 1.48035 1.63309 1.10841 1.08942 1.17920 0.78311 0.81960 0.86869 1.90760 1.47887 1.70445 1.32602 1.21498 0.95505 0.93229 0.92642 1.21748 0.98841 0.93995 0.99868 1.21472 0.96235 0.99783 0.91312 1.18976 0.99379 0.95465 0.95257 1.20999 0.99523 0.99858 0.91665 1.21010 0.97217 0.95583 0.98871 1.20957 0.98873 0.94686 0.97941 1.20937 0.98056 1.00590 0.90629 1.19062 0.97584 0.91133 0.92748 1.68109 1.15835 1.31661 0.98544 1.22982 1.00204 0.94307 0.86500 1.22585 0.99985 0.95240 1.00939 0.95278 0.94599 0.98020 0.93792 0.91973 0.92233 0.90584 0.89632 0.91432 0.83139 0.83675 0.85083 0.85387 0.85011 0.84140 0.91791 0.85072 0.92407 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.07 59.85 0.48 4.52 16 2 N -0.59 -14.91 2.81 -173.44 -0.49 -15.40 16 3 C -0.26 -7.05 9.57 -15.06 -0.14 -7.19 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 6 N -0.90 -26.64 11.02 55.49 0.61 -26.03 16 7 Si 0.90 21.97 29.60 -169.99 -5.03 16.94 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.18 3.64 2.55 -67.89 -0.17 3.46 16 12 C -0.14 -2.72 5.34 -26.61 -0.14 -2.86 16 13 C 0.11 1.80 6.44 -3.71 -0.02 1.77 16 14 N -0.58 -9.22 2.97 -173.45 -0.51 -9.73 16 15 C 0.56 9.01 7.64 -12.13 -0.09 8.92 16 16 O -0.54 -9.74 15.77 5.36 0.08 -9.66 16 17 C 0.12 1.68 6.57 -82.95 -0.55 1.13 16 18 C -0.12 -1.36 9.54 -39.44 -0.38 -1.74 16 19 C -0.06 -0.54 9.88 -39.25 -0.39 -0.92 16 20 C -0.09 -0.84 5.75 -106.71 -0.61 -1.45 16 21 C -0.10 -0.70 9.77 -39.52 -0.39 -1.09 16 22 C -0.11 -0.67 9.96 -39.89 -0.40 -1.07 16 23 C -0.10 -0.72 9.94 -39.94 -0.40 -1.12 16 24 C -0.08 -0.76 9.99 -39.41 -0.39 -1.15 16 25 C 0.12 1.30 6.61 -84.85 -0.56 0.74 16 26 N -0.43 -5.51 6.10 -7.54 -0.05 -5.56 16 27 C 0.08 1.23 5.82 -3.49 -0.02 1.21 16 28 C -0.15 -2.59 5.34 -26.38 -0.14 -2.73 16 29 H 0.03 0.79 7.38 -51.93 -0.38 0.41 16 30 H 0.04 0.96 7.39 -51.93 -0.38 0.57 16 31 H 0.00 0.03 6.47 -51.93 -0.34 -0.31 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 34 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.15 1.54 7.63 -52.49 -0.40 1.14 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 42 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.13 1.87 4.19 -78.34 -0.33 1.54 16 46 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -32.75 374.66 -10.84 -43.59 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.71 Total: -0.19 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -4.40 Total: 0.39 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.44 Total: -56.72 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.75 -10.84 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985765663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.104 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds