Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99779 * 2 1 4 4 H 1.08000 * 119.99833 * 200.35750 * 3 2 1 5 5 C 1.38806 * 120.00150 * 20.36742 * 3 2 1 6 6 N 1.31617 * 120.00403 * 20.74099 * 5 3 2 7 7 Si 1.86803 * 119.99872 * 200.74453 * 5 3 2 8 8 H 1.48503 * 109.46886 * 59.99799 * 7 5 3 9 9 H 1.48503 * 109.47279 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47100 * 299.99834 * 7 5 3 11 11 C 1.46496 * 119.99856 * 180.02562 * 2 1 3 12 12 C 1.53041 * 109.46106 * 300.00277 * 11 2 1 13 13 C 1.53192 * 109.31307 * 181.37328 * 12 11 2 14 14 N 1.46930 * 108.77361 * 305.36543 * 13 12 11 15 15 C 1.34776 * 120.62752 * 233.58723 * 14 13 12 16 16 O 1.21510 * 120.00323 * 10.75754 * 15 14 13 17 17 C 1.48275 * 119.99969 * 190.76105 * 15 14 13 18 18 C 1.40283 * 119.23752 * 188.51774 * 17 15 14 19 19 C 1.36512 * 119.81092 * 179.97438 * 18 17 15 20 20 C 1.40755 * 118.24397 * 359.97438 * 19 18 17 21 21 C 1.40420 * 121.26828 * 180.27658 * 20 19 18 22 22 C 1.36133 * 119.64387 * 180.29595 * 21 20 19 23 23 C 1.39433 * 120.91489 * 359.40618 * 22 21 20 24 24 C 1.35997 * 121.08649 * 0.32208 * 23 22 21 25 25 C 1.40825 * 119.73646 * 359.97438 * 24 23 22 26 26 N 1.31879 * 119.23949 * 8.49401 * 17 15 14 27 27 C 1.46917 * 118.74195 * 53.86018 * 14 13 12 28 28 C 1.53042 * 109.44778 * 60.06406 * 11 2 1 29 29 H 1.09000 * 109.47354 * 275.48758 * 1 2 3 30 30 H 1.09001 * 109.46767 * 35.48467 * 1 2 3 31 31 H 1.08995 * 109.47157 * 155.48216 * 1 2 3 32 32 H 0.96998 * 120.00154 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.46053 * 180.02562 * 11 2 1 34 34 H 1.08993 * 109.49854 * 61.41911 * 12 11 2 35 35 H 1.08996 * 109.52164 * 301.33987 * 12 11 2 36 36 H 1.08994 * 109.58726 * 185.57749 * 13 12 11 37 37 H 1.09003 * 109.70824 * 65.22015 * 13 12 11 38 38 H 1.07998 * 120.09431 * 359.97438 * 18 17 15 39 39 H 1.08000 * 120.87307 * 180.02562 * 19 18 17 40 40 H 1.07993 * 120.17928 * 359.96955 * 21 20 19 41 41 H 1.08003 * 119.54225 * 179.68158 * 22 21 20 42 42 H 1.08004 * 119.45686 * 180.30075 * 23 22 21 43 43 H 1.07995 * 120.12963 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.58775 * 65.92534 * 27 14 13 45 45 H 1.08997 * 109.58919 * 186.35580 * 27 14 13 46 46 H 1.09004 * 109.49631 * 298.56908 * 28 11 2 47 47 H 1.09000 * 109.50058 * 58.66875 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2152 -0.3254 5 6 1.5207 2.3504 0.4184 6 7 0.4499 2.2827 1.1807 7 14 2.1940 4.0138 -0.1006 8 1 2.1823 4.1121 -1.5823 9 1 1.3482 5.0912 0.4732 10 1 3.5864 4.1605 0.3942 11 6 2.1975 -1.2687 -0.0006 12 6 1.8275 -2.0716 1.2487 13 6 2.6209 -3.3820 1.2621 14 7 2.3843 -4.0910 -0.0029 15 6 1.9579 -5.3695 -0.0041 16 8 1.5791 -5.8846 1.0292 17 6 1.9510 -6.1476 -1.2663 18 6 1.3398 -7.4100 -1.2897 19 6 1.3263 -8.1362 -2.4456 20 6 1.9348 -7.5821 -3.5874 21 6 1.9526 -8.2712 -4.8108 22 6 2.5557 -7.7068 -5.8928 23 6 3.1465 -6.4467 -5.8075 24 6 3.1438 -5.7474 -4.6410 25 6 2.5355 -6.2994 -3.4972 26 7 2.5193 -5.6366 -2.3411 27 6 2.6273 -3.3818 -1.2664 28 6 1.8286 -2.0695 -1.2515 29 1 -0.3634 0.0983 1.0229 30 1 -0.3633 0.8368 -0.5966 31 1 -0.3633 -0.9350 -0.4264 32 1 0.0102 3.0965 1.4727 33 1 3.2691 -1.0694 0.0000 34 1 0.7603 -2.2926 1.2363 35 1 2.0686 -1.4913 2.1393 36 1 2.2895 -4.0013 2.0956 37 1 3.6843 -3.1668 1.3670 38 1 0.8813 -7.8063 -0.3958 39 1 0.8602 -9.1097 -2.4830 40 1 1.4949 -9.2460 -4.8914 41 1 2.5730 -8.2405 -6.8316 42 1 3.6143 -6.0190 -6.6820 43 1 3.6064 -4.7728 -4.5922 44 1 3.6909 -3.1642 -1.3647 45 1 2.3001 -4.0008 -2.1017 46 1 0.7612 -2.2905 -1.2403 47 1 2.0708 -1.4875 -2.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985765663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = 49.589654 kcal Electronic energy + Delta-G solvation = -29212.142591 eV Core-core repulsion = 25360.525188 eV Total energy + Delta-G solvation = -3851.617403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23621 -40.89604 -39.06368 -37.86881 -36.78052 -34.74248 -33.88696 -32.39189 -31.62359 -31.36540 -30.84137 -28.04826 -27.08271 -25.69643 -24.81504 -24.11199 -23.65333 -23.03097 -21.69859 -20.28695 -19.03438 -18.77149 -18.71979 -17.99901 -17.25871 -16.85848 -16.62321 -16.31413 -15.82478 -15.60618 -15.35141 -15.26862 -15.13369 -15.05098 -14.74971 -14.65551 -14.31729 -14.11616 -13.91242 -13.75247 -13.24776 -13.11979 -12.86202 -12.70040 -12.62429 -12.46781 -12.42006 -12.37567 -12.19955 -12.10053 -11.83286 -11.69982 -11.55817 -11.43276 -11.27977 -10.62717 -10.07787 -9.90164 -9.64417 -9.23732 -8.79493 -7.82656 -5.26338 -0.85942 -0.33177 0.92227 1.36019 1.46534 1.49687 1.56170 1.84681 2.18001 2.52004 2.86146 3.07352 3.28715 3.49686 3.60879 3.61218 3.82261 3.83730 3.92638 4.11312 4.15304 4.22527 4.27665 4.32078 4.37467 4.40619 4.51701 4.56457 4.71733 4.77939 4.79760 4.88095 4.91100 4.97087 5.02181 5.04050 5.10099 5.18281 5.19298 5.33805 5.41067 5.46814 5.48205 5.52581 5.61457 5.66704 5.68921 5.89668 6.27794 6.32401 6.55593 6.97170 7.13995 7.88170 8.33693 9.20794 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002744 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.002910 B =10203.194411 C =11403.548617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.264 4.264 4 H 0.074 0.926 5 C -0.055 4.055 6 N -0.936 5.936 7 Si 0.966 3.034 8 H -0.279 1.279 9 H -0.297 1.297 10 H -0.274 1.274 11 C 0.174 3.826 12 C -0.131 4.131 13 C 0.120 3.880 14 N -0.587 5.587 15 C 0.561 3.439 16 O -0.568 6.568 17 C 0.098 3.902 18 C -0.142 4.142 19 C -0.044 4.044 20 C -0.100 4.100 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.093 4.093 24 C -0.109 4.109 25 C 0.094 3.906 26 N -0.445 5.445 27 C 0.094 3.906 28 C -0.134 4.134 29 H 0.000 1.000 30 H 0.012 0.988 31 H 0.025 0.975 32 H 0.247 0.753 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.151 0.849 39 H 0.185 0.815 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.140 0.860 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.044 0.956 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -25.673 -16.337 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.394 4.394 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.583 5.583 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.224 1.224 10 H -0.200 1.200 11 C 0.067 3.933 12 C -0.171 4.171 13 C -0.003 4.003 14 N -0.317 5.317 15 C 0.349 3.651 16 O -0.448 6.448 17 C -0.053 4.053 18 C -0.163 4.163 19 C -0.069 4.069 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.029 4.029 26 N -0.158 5.158 27 C -0.028 4.028 28 C -0.174 4.174 29 H 0.018 0.982 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.202 0.798 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.158 0.842 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.063 0.937 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.263 -24.944 -15.745 29.963 hybrid contribution -0.465 0.957 0.600 1.222 sum 4.798 -23.987 -15.145 28.771 Atomic orbital electron populations 1.20396 0.83465 0.95434 0.97237 1.44224 1.01694 1.01445 1.85712 1.19536 0.97439 0.85999 1.36417 0.90850 1.25698 0.99205 1.01589 0.98495 1.70279 1.24225 1.27361 1.36435 0.85360 0.77615 0.79560 0.78073 1.20531 1.22370 1.19968 1.20534 0.95455 0.84696 0.92619 1.22275 0.99246 0.95458 1.00108 1.21646 1.00332 0.92325 0.85957 1.48097 1.63592 1.11182 1.08826 1.18369 0.77195 0.81833 0.87697 1.90724 1.49072 1.70996 1.33981 1.21178 0.98004 0.94208 0.91914 1.21790 0.99788 0.93601 1.01087 1.21883 0.94569 1.00592 0.89898 1.19291 0.99131 0.95089 0.96681 1.21388 0.99139 1.00897 0.90535 1.21473 0.95530 0.95134 1.00034 1.21359 0.97415 0.94712 0.97804 1.21091 0.99270 1.01325 0.91044 1.19422 0.98660 0.92313 0.92514 1.67816 1.16226 1.32664 0.99057 1.22988 1.00359 0.92800 0.86668 1.22408 0.99561 0.96165 0.99223 0.98183 0.96962 0.95616 0.94381 0.91894 0.94033 0.92412 0.89869 0.89610 0.83158 0.79824 0.81910 0.82039 0.82426 0.84176 0.90603 0.83824 0.93717 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.07 127.77 1.03 10.39 16 2 N -0.61 -31.24 2.81 -702.64 -1.97 -33.22 16 3 C -0.26 -14.72 9.57 84.03 0.80 -13.91 16 4 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 5 C -0.05 -3.13 4.93 84.86 0.42 -2.71 16 6 N -0.94 -57.09 11.02 21.65 0.24 -56.85 16 7 Si 0.97 45.76 29.60 68.60 2.03 47.79 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 C 0.17 7.19 2.55 45.02 0.11 7.30 16 12 C -0.13 -5.13 5.34 30.67 0.16 -4.96 16 13 C 0.12 3.94 6.44 86.36 0.56 4.50 16 14 N -0.59 -18.81 2.97 -820.98 -2.43 -21.24 16 15 C 0.56 18.33 7.64 86.91 0.66 19.00 16 16 O -0.57 -21.16 15.77 -3.75 -0.06 -21.22 16 17 C 0.10 2.67 6.57 42.31 0.28 2.95 16 18 C -0.14 -3.04 9.54 22.36 0.21 -2.83 16 19 C -0.04 -0.65 9.88 22.48 0.22 -0.43 16 20 C -0.10 -1.62 5.75 -21.22 -0.12 -1.74 16 21 C -0.10 -0.96 9.77 22.31 0.22 -0.74 16 22 C -0.10 -0.80 9.96 22.07 0.22 -0.58 16 23 C -0.09 -0.95 9.94 22.04 0.22 -0.73 16 24 C -0.11 -1.77 9.99 22.38 0.22 -1.54 16 25 C 0.09 1.95 6.61 40.47 0.27 2.22 16 26 N -0.45 -11.26 6.10 -177.76 -1.09 -12.34 16 27 C 0.09 2.78 5.82 86.51 0.50 3.28 16 28 C -0.13 -4.70 5.34 30.82 0.16 -4.53 16 29 H 0.00 0.00 7.38 -2.39 -0.02 -0.02 16 30 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 31 H 0.03 1.18 6.47 -2.39 -0.02 1.16 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.06 2.59 7.85 -2.39 -0.02 2.57 16 34 H 0.04 1.75 7.72 -2.39 -0.02 1.74 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.08 2.80 7.01 -2.39 -0.02 2.78 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.15 3.09 7.63 -2.91 -0.02 3.07 16 39 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 41 H 0.16 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.15 4.06 4.19 -54.54 -0.23 3.83 16 46 H 0.04 1.68 6.72 -2.39 -0.02 1.66 16 47 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -73.83 374.66 3.64 -70.19 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.76 Total: 11.95 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.16 Total: 14.94 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.26 Total: -123.65 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.83 3.64 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985765663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.780 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds