Wall clock time and date at job start Sat Apr 11 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99802 * 2 1 4 4 H 1.08005 * 119.99867 * 198.88237 * 3 2 1 5 5 C 1.38809 * 119.99963 * 18.87720 * 3 2 1 6 6 N 1.31617 * 120.00092 * 15.93237 * 5 3 2 7 7 Si 1.86801 * 119.99906 * 195.93339 * 5 3 2 8 8 H 1.48502 * 109.47064 * 94.98091 * 7 5 3 9 9 H 1.48503 * 109.47333 * 214.97628 * 7 5 3 10 10 H 1.48499 * 109.47197 * 334.97875 * 7 5 3 11 11 C 1.46500 * 120.00217 * 179.97438 * 2 1 3 12 12 C 1.53038 * 109.46120 * 300.00179 * 11 2 1 13 13 C 1.53194 * 109.31314 * 181.37040 * 12 11 2 14 14 N 1.46927 * 108.77564 * 305.36203 * 13 12 11 15 15 C 1.34772 * 120.63086 * 233.58702 * 14 13 12 16 16 O 1.21601 * 120.00056 * 5.41891 * 15 14 13 17 17 C 1.47449 * 119.99954 * 185.42383 * 15 14 13 18 18 C 1.38867 * 120.46004 * 50.95117 * 17 15 14 19 19 C 1.38901 * 120.67398 * 180.26073 * 18 17 15 20 20 C 1.36375 * 121.27368 * 359.47912 * 19 18 17 21 21 C 1.40397 * 119.98164 * 0.25876 * 20 19 18 22 22 C 1.40472 * 121.94775 * 180.02562 * 21 20 19 23 23 N 1.31276 * 119.88183 * 179.97438 * 22 21 20 24 24 C 1.32553 * 122.73118 * 0.02562 * 23 22 21 25 25 C 1.36330 * 121.82308 * 0.02562 * 24 23 22 26 26 C 1.40295 * 118.70167 * 359.97438 * 25 24 23 27 27 C 1.46932 * 118.73556 * 53.86023 * 14 13 12 28 28 C 1.53048 * 109.44600 * 60.06249 * 11 2 1 29 29 H 1.09000 * 109.47323 * 274.43568 * 1 2 3 30 30 H 1.08997 * 109.47405 * 34.44374 * 1 2 3 31 31 H 1.08997 * 109.47132 * 154.43954 * 1 2 3 32 32 H 0.97002 * 119.99652 * 179.97438 * 6 5 3 33 33 H 1.08992 * 109.46218 * 180.02562 * 11 2 1 34 34 H 1.09003 * 109.49814 * 61.41884 * 12 11 2 35 35 H 1.09004 * 109.49553 * 301.32540 * 12 11 2 36 36 H 1.08999 * 109.58386 * 185.57568 * 13 12 11 37 37 H 1.09000 * 109.69874 * 65.22020 * 13 12 11 38 38 H 1.07997 * 119.66045 * 359.97438 * 18 17 15 39 39 H 1.07999 * 119.36085 * 179.76529 * 19 18 17 40 40 H 1.07998 * 120.00514 * 180.24032 * 20 19 18 41 41 H 1.07995 * 120.05893 * 359.96227 * 22 21 20 42 42 H 1.08004 * 119.08960 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.65234 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.58537 * 65.92759 * 27 14 13 45 45 H 1.08997 * 109.58529 * 186.35002 * 27 14 13 46 46 H 1.09001 * 109.49316 * 298.57038 * 28 11 2 47 47 H 1.08998 * 109.49692 * 58.67199 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1861 1.2111 -0.3027 5 6 1.5116 2.3557 0.3889 6 7 0.3731 2.2969 1.0467 7 14 2.2687 4.0134 -0.0212 8 1 1.6779 4.5290 -1.2823 9 1 1.9939 4.9696 1.0813 10 1 3.7362 3.8595 -0.1887 11 6 2.1976 -1.2687 0.0006 12 6 1.8277 -2.0705 1.2505 13 6 2.6211 -3.3809 1.2651 14 7 2.3845 -4.0911 0.0008 15 6 1.9581 -5.3695 0.0008 16 8 1.6712 -5.9148 1.0491 17 6 1.8396 -6.1071 -1.2705 18 6 2.9013 -6.1438 -2.1647 19 6 2.7927 -6.8328 -3.3659 20 6 1.6506 -7.4998 -3.6986 21 6 0.5540 -7.4940 -2.8220 22 6 -0.6416 -8.1672 -3.1228 23 7 -1.6418 -8.1353 -2.2731 24 6 -1.5815 -7.4855 -1.1193 25 6 -0.4661 -6.8012 -0.7370 26 6 0.6444 -6.7901 -1.5944 27 6 2.6274 -3.3828 -1.2634 28 6 1.8286 -2.0706 -1.2497 29 1 -0.3634 0.0795 1.0246 30 1 -0.3634 0.8475 -0.5812 31 1 -0.3633 -0.9271 -0.4434 32 1 -0.0726 3.1144 1.3188 33 1 3.2691 -1.0693 0.0009 34 1 0.7604 -2.2915 1.2384 35 1 2.0691 -1.4890 2.1404 36 1 2.2897 -3.9994 2.0992 37 1 3.6844 -3.1654 1.3698 38 1 3.8194 -5.6276 -1.9258 39 1 3.6304 -6.8442 -4.0474 40 1 1.5898 -8.0321 -4.6363 41 1 -0.7379 -8.7099 -4.0515 42 1 -2.4399 -7.4986 -0.4639 43 1 -0.4375 -6.2786 0.2076 44 1 3.6909 -3.1654 -1.3619 45 1 2.3002 -4.0027 -2.0982 46 1 0.7613 -2.2917 -1.2382 47 1 2.0708 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985787436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:47 Heat of formation + Delta-G solvation = 52.146497 kcal Electronic energy + Delta-G solvation = -29488.718876 eV Core-core repulsion = 25637.212346 eV Total energy + Delta-G solvation = -3851.506530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34816 -39.86210 -37.68687 -37.32181 -35.13598 -33.30685 -32.33000 -31.54974 -30.85147 -30.06610 -29.46565 -26.04435 -25.51167 -24.49656 -23.90940 -23.46236 -22.77935 -21.83393 -20.05984 -18.83474 -18.40027 -17.49797 -16.93241 -16.80963 -16.61069 -15.89316 -15.23195 -15.05954 -14.94488 -14.52295 -14.37693 -14.01136 -13.95757 -13.82903 -13.46218 -13.41315 -13.08070 -12.91136 -12.60811 -12.40707 -12.27950 -12.05926 -11.79826 -11.62655 -11.52031 -11.00400 -10.89947 -10.81009 -10.47465 -10.41450 -10.26591 -10.18849 -9.93365 -9.85760 -9.69199 -9.62980 -9.35896 -8.62259 -8.53376 -8.31817 -6.82362 -5.74552 -3.16874 -0.08269 0.59560 1.47187 2.47729 2.76494 3.04889 3.36316 3.42844 3.44535 3.80874 4.11990 4.20884 4.37135 4.43136 4.46590 4.56383 4.64738 4.78702 4.99525 5.05894 5.19037 5.21547 5.33364 5.36938 5.41362 5.44878 5.52957 5.54915 5.62664 5.68445 5.72920 5.82674 5.93066 5.96924 6.06230 6.10073 6.19292 6.29512 6.33745 6.45640 6.47926 6.55928 6.75913 6.92917 6.95502 7.37815 7.38936 7.69710 7.72765 7.79228 8.07180 8.35786 9.21092 9.85683 10.33583 11.30659 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.002733 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.835023 B =10241.154783 C =10420.237938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.145 4.145 13 C 0.113 3.887 14 N -0.596 5.596 15 C 0.559 3.441 16 O -0.538 6.538 17 C -0.113 4.113 18 C -0.062 4.062 19 C -0.125 4.125 20 C -0.068 4.068 21 C -0.117 4.117 22 C 0.143 3.857 23 N -0.486 5.486 24 C 0.078 3.922 25 C -0.143 4.143 26 C 0.009 3.991 27 C 0.104 3.896 28 C -0.147 4.147 29 H 0.026 0.974 30 H 0.043 0.957 31 H -0.003 1.003 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -20.293 -9.749 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.009 4.009 14 N -0.328 5.328 15 C 0.347 3.653 16 O -0.416 6.416 17 C -0.116 4.116 18 C -0.082 4.082 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.029 4.029 23 N -0.194 5.194 24 C -0.065 4.065 25 C -0.163 4.163 26 C 0.003 3.997 27 C -0.020 4.020 28 C -0.187 4.187 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.792 -20.765 -9.160 22.866 hybrid contribution 1.109 1.571 0.069 1.924 sum 3.900 -19.194 -9.092 21.593 Atomic orbital electron populations 1.20734 0.82655 0.95425 0.99170 1.43993 1.01839 1.00180 1.85758 1.19255 0.96151 0.84732 1.38304 0.91246 1.24929 0.97837 0.98238 0.98797 1.70109 1.18439 1.26532 1.40056 0.86255 0.78580 0.84224 0.77596 1.21611 1.21857 1.20502 1.20267 0.95985 0.86040 0.90586 1.22513 1.00046 0.94322 1.01630 1.21764 0.99967 0.93884 0.85288 1.48128 1.64945 1.11165 1.08535 1.18091 0.77242 0.81662 0.88285 1.90787 1.49864 1.68252 1.32709 1.19888 0.94987 1.01001 0.95743 1.21489 0.97933 0.96326 0.92457 1.20845 0.98601 0.98046 0.96841 1.21136 0.91932 0.97175 0.98516 1.18985 0.96930 1.00699 0.95257 1.23214 0.87239 0.94456 0.97947 1.67429 1.30630 1.17822 1.03527 1.22260 0.97630 0.93529 0.93033 1.22104 0.93132 1.00304 1.00722 1.17861 0.93363 0.94897 0.93576 1.22097 1.00393 0.94366 0.85096 1.22559 1.00115 0.94524 1.01486 0.95566 0.93786 0.98464 0.93792 0.91872 0.92171 0.90470 0.89465 0.91411 0.84701 0.84749 0.84492 0.81807 0.82699 0.83664 0.91113 0.90115 0.91938 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.04 59.85 0.48 4.49 16 2 N -0.60 -14.32 2.82 -173.44 -0.49 -14.81 16 3 C -0.26 -6.78 9.63 -15.06 -0.14 -6.93 16 4 H 0.07 1.79 7.80 -52.48 -0.41 1.38 16 5 C 0.00 0.01 5.04 -17.43 -0.09 -0.08 16 6 N -0.91 -26.15 10.64 55.49 0.59 -25.56 16 7 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.23 16 12 C -0.14 -2.55 5.34 -26.61 -0.14 -2.69 16 13 C 0.11 1.66 6.44 -3.71 -0.02 1.64 16 14 N -0.60 -8.27 2.97 -173.76 -0.52 -8.79 16 15 C 0.56 8.21 6.62 -12.51 -0.08 8.12 16 16 O -0.54 -9.44 14.98 5.28 0.08 -9.36 16 17 C -0.11 -1.40 4.76 -104.70 -0.50 -1.90 16 18 C -0.06 -0.57 7.61 -39.10 -0.30 -0.87 16 19 C -0.13 -0.90 9.92 -40.01 -0.40 -1.30 16 20 C -0.07 -0.50 9.79 -39.44 -0.39 -0.88 16 21 C -0.12 -1.19 5.74 -106.88 -0.61 -1.80 16 22 C 0.14 1.38 11.05 -16.95 -0.19 1.19 16 23 N -0.49 -5.74 10.30 -13.11 -0.14 -5.87 16 24 C 0.08 0.92 11.07 -17.93 -0.20 0.73 16 25 C -0.14 -1.87 9.26 -39.50 -0.37 -2.23 16 26 C 0.01 0.11 5.77 -106.55 -0.61 -0.50 16 27 C 0.10 1.27 5.42 -3.48 -0.02 1.26 16 28 C -0.15 -2.32 5.34 -26.38 -0.14 -2.46 16 29 H 0.03 0.69 7.48 -51.93 -0.39 0.31 16 30 H 0.04 1.16 7.09 -51.93 -0.37 0.79 16 31 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 34 H 0.06 1.15 7.72 -51.93 -0.40 0.74 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.14 1.04 7.50 -52.49 -0.39 0.64 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.15 2.05 6.45 -52.49 -0.34 1.71 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.88 5.22 -51.93 -0.27 0.61 16 46 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -32.70 372.37 -10.32 -43.02 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.54 Total: 0.28 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.89 Total: -1.00 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.55 Total: -55.03 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.70 -10.32 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985787436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.164 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds