Wall clock time and date at job start Sat Apr 11 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99706 * 2 1 4 4 H 1.08002 * 119.99553 * 204.40473 * 3 2 1 5 5 C 1.38808 * 120.00143 * 24.40100 * 3 2 1 6 6 N 1.31620 * 119.99844 * 14.21016 * 5 3 2 7 7 Si 1.86801 * 119.99958 * 194.20821 * 5 3 2 8 8 H 1.48496 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47257 * 120.00416 * 7 5 3 10 10 H 1.48504 * 109.47046 * 240.00128 * 7 5 3 11 11 C 1.46493 * 120.00099 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.46048 * 299.99759 * 11 2 1 13 13 C 1.53199 * 109.31018 * 181.37243 * 12 11 2 14 14 N 1.46925 * 108.77517 * 305.36034 * 13 12 11 15 15 C 1.34773 * 120.63105 * 233.58425 * 14 13 12 16 16 O 1.21606 * 120.00412 * 4.63067 * 15 14 13 17 17 C 1.47443 * 120.00030 * 184.62267 * 15 14 13 18 18 C 1.38958 * 121.16853 * 40.06246 * 17 15 14 19 19 N 1.32197 * 121.31594 * 179.97438 * 18 17 15 20 20 C 1.31195 * 123.69905 * 359.72258 * 19 18 17 21 21 C 1.40390 * 120.91236 * 0.54479 * 20 19 18 22 22 C 1.40394 * 122.14304 * 179.75683 * 21 20 19 23 23 C 1.36223 * 119.48966 * 179.72288 * 22 21 20 24 24 C 1.39298 * 121.10444 * 0.02562 * 23 22 21 25 25 C 1.36442 * 120.94584 * 359.97438 * 24 23 22 26 26 C 1.39688 * 119.43656 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.73468 * 53.86470 * 14 13 12 28 28 C 1.53042 * 109.44854 * 60.05920 * 11 2 1 29 29 H 1.09007 * 109.46675 * 271.93098 * 1 2 3 30 30 H 1.09000 * 109.47235 * 31.93024 * 1 2 3 31 31 H 1.08998 * 109.47327 * 151.93760 * 1 2 3 32 32 H 0.97000 * 119.99496 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.46318 * 180.02562 * 11 2 1 34 34 H 1.08999 * 109.50090 * 61.42290 * 12 11 2 35 35 H 1.08995 * 109.49698 * 301.32200 * 12 11 2 36 36 H 1.09005 * 109.58202 * 185.57724 * 13 12 11 37 37 H 1.08992 * 109.70613 * 65.22409 * 13 12 11 38 38 H 1.07997 * 119.33854 * 359.95748 * 18 17 15 39 39 H 1.07999 * 119.54950 * 180.02562 * 20 19 18 40 40 H 1.08009 * 120.25757 * 359.70192 * 22 21 20 41 41 H 1.08001 * 119.45028 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.52628 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.27666 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.58869 * 65.92459 * 27 14 13 45 45 H 1.09003 * 109.58288 * 186.34735 * 27 14 13 46 46 H 1.08996 * 109.49915 * 298.57124 * 28 11 2 47 47 H 1.08998 * 109.49813 * 58.67061 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1573 1.2277 -0.3865 5 6 1.5486 2.3344 0.4966 6 7 0.4495 2.2438 1.2151 7 14 2.2995 4.0083 0.1452 8 1 3.5238 3.8387 -0.6778 9 1 1.3192 4.8459 -0.5916 10 1 2.6528 4.6711 1.4263 11 6 2.1975 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2487 13 6 2.6211 -3.3819 1.2621 14 7 2.3844 -4.0910 -0.0028 15 6 1.9581 -5.3695 -0.0039 16 8 1.6850 -5.9204 1.0453 17 6 1.8226 -6.1003 -1.2772 18 6 2.7642 -5.9618 -2.2897 19 7 2.6459 -6.6160 -3.4323 20 6 1.6583 -7.4363 -3.7025 21 6 0.6343 -7.6643 -2.7696 22 6 -0.4369 -8.5325 -3.0335 23 6 -1.3985 -8.7183 -2.0867 24 6 -1.3374 -8.0606 -0.8603 25 6 -0.3106 -7.2101 -0.5707 26 6 0.6924 -6.9967 -1.5192 27 6 2.6273 -3.3817 -1.2663 28 6 1.8285 -2.0695 -1.2514 29 1 -0.3633 0.0346 1.0272 30 1 -0.3634 0.8722 -0.5435 31 1 -0.3634 -0.9068 -0.4834 32 1 0.0297 3.0464 1.5625 33 1 3.2691 -1.0693 0.0000 34 1 0.7604 -2.2926 1.2364 35 1 2.0692 -1.4909 2.1390 36 1 2.2897 -4.0012 2.0957 37 1 3.6844 -3.1667 1.3669 38 1 3.6094 -5.3063 -2.1402 39 1 1.6281 -7.9367 -4.6591 40 1 -0.4984 -9.0489 -3.9802 41 1 -2.2221 -9.3866 -2.2903 42 1 -2.1138 -8.2264 -0.1282 43 1 -0.2741 -6.7055 0.3835 44 1 3.6908 -3.1641 -1.3647 45 1 2.3001 -4.0009 -2.1016 46 1 0.7613 -2.2906 -1.2402 47 1 2.0707 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985800337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:50 Heat of formation + Delta-G solvation = 55.070200 kcal Electronic energy + Delta-G solvation = -29408.537418 eV Core-core repulsion = 25557.157670 eV Total energy + Delta-G solvation = -3851.379748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22447 -39.71196 -37.64449 -37.49534 -35.11315 -33.25227 -32.17409 -31.45143 -31.01180 -30.00405 -29.41814 -26.02902 -25.74744 -24.44461 -23.86526 -23.22226 -22.64728 -21.88138 -20.07150 -18.80073 -18.48188 -17.70715 -17.11936 -16.76104 -16.17131 -15.98421 -15.23851 -15.04761 -14.95140 -14.48523 -14.28805 -14.04289 -13.93928 -13.78854 -13.46946 -13.31763 -13.14584 -12.91351 -12.55053 -12.32386 -12.24334 -12.10819 -11.67815 -11.55482 -11.48607 -10.99794 -10.90011 -10.79939 -10.43174 -10.39253 -10.27032 -10.19283 -10.05491 -9.87734 -9.62694 -9.50264 -9.35812 -8.61547 -8.52971 -8.31399 -6.74348 -5.74532 -3.20882 -0.13829 0.60546 1.43346 2.58415 2.79849 3.04150 3.36241 3.43873 3.45596 3.77627 4.00574 4.22226 4.30007 4.42170 4.47173 4.56864 4.64844 4.86576 4.96935 4.99290 5.19928 5.24786 5.26859 5.35589 5.40488 5.45913 5.47493 5.57437 5.67062 5.73720 5.77043 5.85852 5.99246 6.07307 6.12525 6.17451 6.22337 6.25408 6.35116 6.50612 6.53494 6.58001 6.77625 6.95665 6.99100 7.34687 7.40303 7.61167 7.69991 7.79370 8.10097 8.39603 9.22108 9.85854 10.36320 11.30733 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002656 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.624432 B =10541.363752 C =10734.729807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.114 3.886 14 N -0.595 5.595 15 C 0.565 3.435 16 O -0.539 6.539 17 C -0.163 4.163 18 C 0.114 3.886 19 N -0.494 5.494 20 C 0.169 3.831 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.119 4.119 24 C -0.095 4.095 25 C -0.102 4.102 26 C 0.011 3.989 27 C 0.096 3.904 28 C -0.146 4.146 29 H 0.025 0.975 30 H 0.041 0.959 31 H -0.003 1.003 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -22.135 -8.699 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.316 5.316 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.008 4.008 14 N -0.327 5.327 15 C 0.353 3.647 16 O -0.418 6.418 17 C -0.168 4.168 18 C -0.030 4.030 19 N -0.201 5.201 20 C -0.003 4.003 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.137 4.137 24 C -0.114 4.114 25 C -0.120 4.120 26 C 0.005 3.995 27 C -0.027 4.027 28 C -0.186 4.186 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.047 -21.983 -8.580 23.598 hybrid contribution -0.415 0.971 0.528 1.181 sum -0.368 -21.011 -8.053 22.505 Atomic orbital electron populations 1.20709 0.82935 0.95738 0.98770 1.43938 1.01676 1.00189 1.85768 1.19236 0.99230 0.85676 1.34431 0.91462 1.25042 0.98176 0.98579 0.97781 1.70082 1.21209 1.27312 1.36276 0.86222 0.78497 0.84491 0.77542 1.20301 1.21660 1.21769 1.20294 0.96070 0.86086 0.90490 1.22502 0.99981 0.94276 1.01675 1.21771 1.00032 0.93883 0.85144 1.48093 1.64937 1.11114 1.08564 1.17851 0.77340 0.81575 0.87976 1.90757 1.50447 1.67865 1.32705 1.21935 0.97830 1.00676 0.96325 1.22935 0.97547 0.95343 0.87138 1.67143 1.24102 1.07631 1.21217 1.23269 0.87426 0.91717 0.97866 1.18977 0.98085 1.00052 0.94997 1.20968 0.93103 0.96925 0.99758 1.20975 0.99133 0.99845 0.93729 1.21125 0.97865 0.95557 0.96896 1.21222 0.92906 0.98238 0.99629 1.18856 0.93453 0.93720 0.93443 1.22306 1.00580 0.94523 0.85251 1.22548 1.00051 0.94503 1.01532 0.95640 0.93977 0.98410 0.93818 0.91805 0.92223 0.90419 0.89443 0.91345 0.81855 0.81683 0.84671 0.85388 0.85257 0.83802 0.90803 0.89877 0.91963 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.06 59.85 0.48 4.46 16 2 N -0.59 -14.40 2.80 -173.44 -0.49 -14.89 16 3 C -0.26 -6.86 9.55 -15.06 -0.14 -7.00 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16 6 N -0.90 -26.17 10.89 55.49 0.60 -25.56 16 7 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 C 0.18 3.45 2.55 -67.89 -0.17 3.28 16 12 C -0.14 -2.59 5.34 -26.61 -0.14 -2.73 16 13 C 0.11 1.71 6.44 -3.71 -0.02 1.69 16 14 N -0.60 -8.57 2.97 -173.76 -0.52 -9.09 16 15 C 0.56 8.58 7.08 -12.51 -0.09 8.49 16 16 O -0.54 -9.51 14.49 5.27 0.08 -9.44 16 17 C -0.16 -2.17 5.33 -102.66 -0.55 -2.72 16 18 C 0.11 1.34 8.56 -17.13 -0.15 1.20 16 19 N -0.49 -5.60 10.22 -12.58 -0.13 -5.73 16 20 C 0.17 1.57 11.00 -17.01 -0.19 1.39 16 21 C -0.12 -1.21 5.74 -106.89 -0.61 -1.83 16 22 C -0.09 -0.67 9.82 -39.50 -0.39 -1.06 16 23 C -0.12 -0.91 9.94 -39.91 -0.40 -1.31 16 24 C -0.10 -0.89 9.96 -39.83 -0.40 -1.29 16 25 C -0.10 -1.25 9.28 -39.69 -0.37 -1.62 16 26 C 0.01 0.14 5.90 -104.75 -0.62 -0.48 16 27 C 0.10 1.25 4.96 -3.49 -0.02 1.23 16 28 C -0.15 -2.37 5.33 -26.39 -0.14 -2.51 16 29 H 0.03 0.67 7.50 -51.92 -0.39 0.28 16 30 H 0.04 1.11 7.26 -51.93 -0.38 0.73 16 31 H 0.00 -0.06 6.46 -51.93 -0.34 -0.39 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 34 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.16 1.67 6.50 -52.49 -0.34 1.33 16 39 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 1.98 6.25 -52.49 -0.33 1.65 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.00 4.61 -51.93 -0.24 0.76 16 46 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.38 370.98 -10.34 -42.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.46 Total: 0.66 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -4.00 Total: -0.83 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.53 Total: -55.27 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.38 -10.34 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985800337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.795 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds