Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46755 * 180.02562 * 5 3 2 7 7 C 1.36210 * 120.66564 * 264.71597 * 6 5 3 8 8 N 1.32578 * 121.87608 * 179.74896 * 7 6 5 9 9 C 1.31266 * 122.77075 * 0.55676 * 8 7 6 10 10 C 1.40389 * 119.88600 * 359.71957 * 9 8 7 11 11 C 1.40384 * 122.08457 * 179.97438 * 10 9 8 12 12 C 1.36170 * 119.51902 * 180.02562 * 11 10 9 13 13 C 1.39372 * 121.08978 * 0.03995 * 12 11 10 14 14 C 1.36221 * 121.02401 * 359.97438 * 13 12 11 15 15 C 1.40236 * 119.47874 * 359.97438 * 14 13 12 16 16 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 17 17 C 1.53782 * 113.61652 * 60.00231 * 16 2 1 18 18 C 1.53781 * 87.08260 * 220.01840 * 17 16 2 19 19 N 1.46497 * 113.61305 * 270.79919 * 18 17 16 20 20 C 1.36944 * 119.99791 * 203.46713 * 19 18 17 21 21 H 1.07993 * 120.00042 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46726 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47021 * 120.00168 * 24 22 20 27 27 H 1.48502 * 109.47101 * 240.00261 * 24 22 20 28 28 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 29 29 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 30 30 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 31 31 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 32 32 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 33 33 H 1.09004 * 109.46970 * 60.00328 * 5 3 2 34 34 H 1.08002 * 119.06498 * 0.02562 * 7 6 5 35 35 H 1.08001 * 120.06030 * 179.74805 * 9 8 7 36 36 H 1.08007 * 120.23715 * 0.04497 * 11 10 9 37 37 H 1.07996 * 119.44952 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.48997 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.25834 * 179.97438 * 14 13 12 40 40 H 1.08997 * 112.90648 * 191.25794 * 16 2 1 41 41 H 1.09001 * 113.61250 * 105.46657 * 17 16 2 42 42 H 1.08997 * 113.61225 * 334.56498 * 17 16 2 43 43 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 44 44 H 0.96995 * 120.00146 * 23.47603 * 19 18 17 45 45 H 0.96996 * 120.00281 * 179.97438 * 23 22 20 46 46 H 1.08993 * 113.61491 * 89.15923 * 28 18 17 47 47 H 1.09000 * 113.61138 * 220.06261 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3647 3.6177 -0.0011 7 6 2.7341 4.2164 1.1653 8 7 3.5973 5.2223 1.1932 9 6 4.1461 5.7179 0.1086 10 6 3.8282 5.1756 -1.1467 11 6 4.3873 5.6700 -2.3357 12 6 4.0415 5.1048 -3.5254 13 6 3.1404 4.0431 -3.5829 14 6 2.5778 3.5376 -2.4500 15 6 2.9111 4.0939 -1.2065 16 6 2.1975 -1.2687 0.0006 17 6 1.8955 -2.1550 -1.2193 18 6 1.9130 -3.3527 -0.2548 19 7 3.2394 -3.9515 -0.0869 20 6 3.3561 -5.2537 0.3206 21 1 2.4704 -5.8392 0.5178 22 6 4.6129 -5.8213 0.4792 23 7 5.6924 -5.1078 0.2383 24 14 4.7721 -7.5978 1.0345 25 1 3.4194 -8.1759 1.2377 26 1 5.4937 -8.3778 -0.0029 27 1 5.5298 -7.6515 2.3105 28 6 1.5384 -2.3625 0.8606 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.7591 2.5298 -0.8908 33 1 0.7583 2.5302 0.8892 34 1 2.3154 3.8586 2.0943 35 1 4.8413 6.5411 0.1818 36 1 5.0868 6.4924 -2.3071 37 1 4.4726 5.4856 -4.4394 38 1 2.8841 3.6146 -4.5405 39 1 1.8805 2.7149 -2.5089 40 1 3.2624 -1.1437 0.1965 41 1 2.6999 -2.1747 -1.9546 42 1 0.9184 -1.9671 -1.6643 43 1 1.1383 -4.0911 -0.4615 44 1 4.0349 -3.4257 -0.2643 45 1 6.5706 -5.5043 0.3495 46 1 0.4636 -2.2314 0.9853 47 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998926286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 59.600735 kcal Electronic energy + Delta-G solvation = -28591.752022 eV Core-core repulsion = 24740.568732 eV Total energy + Delta-G solvation = -3851.183290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23261 -39.99800 -38.09818 -37.48606 -34.83809 -34.31915 -32.96289 -31.40543 -30.57907 -29.81437 -28.15684 -27.08905 -25.14568 -24.56667 -24.02562 -23.73119 -22.85736 -21.52743 -19.41420 -18.27089 -18.18455 -17.79896 -17.51658 -16.96376 -16.56987 -16.06785 -15.57506 -15.04004 -14.86797 -14.63096 -14.43076 -14.02841 -13.94267 -13.84213 -13.41234 -13.33460 -13.08300 -12.88870 -12.73618 -12.35729 -12.30185 -12.26981 -12.02951 -11.93409 -11.84927 -11.51726 -11.26803 -10.89216 -10.76859 -10.32042 -10.26273 -10.13896 -9.84085 -9.69664 -9.65046 -9.50753 -9.25712 -8.92333 -8.42939 -8.21217 -7.01874 -5.79748 -3.10313 0.14985 0.73214 1.69973 2.66831 2.84966 3.11084 3.41930 3.47033 3.49893 3.88548 4.11686 4.32557 4.47057 4.51548 4.54963 4.57765 4.65485 4.75455 4.87094 4.96693 4.98120 5.07386 5.12801 5.13619 5.24011 5.35858 5.38025 5.40597 5.48354 5.54389 5.59552 5.65525 5.80217 5.84867 5.85065 5.98114 6.05899 6.15888 6.20756 6.23642 6.38867 6.42023 6.56074 6.62108 6.69173 6.77528 7.01277 7.51425 7.68684 7.80997 8.26336 8.38136 9.48883 10.05417 10.39273 11.42331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002365 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.558137 B =11838.702200 C =12172.624944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.603 5.603 3 C 0.509 3.491 4 O -0.527 6.527 5 C -0.099 4.099 6 C -0.096 4.096 7 C 0.088 3.912 8 N -0.484 5.484 9 C 0.141 3.859 10 C -0.112 4.112 11 C -0.087 4.087 12 C -0.121 4.121 13 C -0.098 4.098 14 C -0.107 4.107 15 C -0.007 4.007 16 C 0.125 3.875 17 C -0.167 4.167 18 C 0.173 3.827 19 N -0.706 5.706 20 C -0.245 4.245 21 H 0.073 0.927 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.071 0.929 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 23.629 -5.805 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C 0.296 3.704 4 O -0.402 6.402 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.056 4.056 8 N -0.191 5.191 9 C -0.030 4.030 10 C -0.114 4.114 11 C -0.107 4.107 12 C -0.139 4.139 13 C -0.117 4.117 14 C -0.125 4.125 15 C -0.012 4.012 16 C 0.023 3.977 17 C -0.208 4.208 18 C 0.059 3.941 19 N -0.345 5.345 20 C -0.376 4.376 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.576 5.576 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.224 4.224 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.627 23.670 -4.855 26.814 hybrid contribution 0.132 -1.227 -0.534 1.344 sum -11.495 22.443 -5.388 25.785 Atomic orbital electron populations 1.21768 0.80134 1.03050 1.01891 1.47976 1.06643 1.06145 1.72845 1.20410 0.88167 0.84899 0.76884 1.90764 1.13746 1.87096 1.48618 1.20651 0.97391 0.90566 1.05296 1.20024 0.99117 0.97021 0.93685 1.22004 0.94119 0.92251 0.97201 1.67415 1.08358 1.11240 1.32096 1.23165 0.95947 0.97287 0.86616 1.19006 0.99042 0.97571 0.95736 1.20973 0.98782 0.99549 0.91415 1.20919 0.98112 0.96680 0.98185 1.20989 0.96115 0.95935 0.98659 1.20943 1.00577 0.99522 0.91463 1.17946 0.95219 0.94447 0.93626 1.22781 0.97768 0.79536 0.97620 1.23935 1.01367 0.97788 0.97671 1.20900 0.89904 0.91256 0.92003 1.42228 1.01013 1.11594 1.79638 1.19302 0.92374 0.88016 1.37934 0.90884 1.24799 0.95417 0.98398 1.02187 1.69683 0.97114 1.35940 1.54907 0.86100 0.77466 0.84547 0.77935 1.20484 1.21799 1.21803 1.24332 0.99331 0.97699 1.01015 0.92472 0.91460 0.90428 0.87860 0.87561 0.83213 0.82052 0.84955 0.85587 0.85559 0.85539 0.86506 0.91155 0.90489 0.91519 0.77937 0.93390 0.91006 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 8.85 59.85 0.53 1.17 16 2 N -0.60 -8.00 3.08 -172.89 -0.53 -8.53 16 3 C 0.51 7.29 7.67 -10.99 -0.08 7.20 16 4 O -0.53 -10.21 15.52 5.56 0.09 -10.13 16 5 C -0.10 -0.97 3.86 -29.03 -0.11 -1.08 16 6 C -0.10 -1.16 4.39 -104.44 -0.46 -1.62 16 7 C 0.09 1.09 10.72 -17.96 -0.19 0.89 16 8 N -0.48 -6.26 10.30 -13.16 -0.14 -6.39 16 9 C 0.14 1.55 11.05 -16.98 -0.19 1.36 16 10 C -0.11 -1.26 5.74 -106.86 -0.61 -1.87 16 11 C -0.09 -0.77 9.81 -39.52 -0.39 -1.16 16 12 C -0.12 -1.01 9.94 -39.90 -0.40 -1.41 16 13 C -0.10 -0.90 9.95 -39.89 -0.40 -1.30 16 14 C -0.11 -1.16 9.33 -39.56 -0.37 -1.53 16 15 C -0.01 -0.09 5.75 -106.82 -0.61 -0.70 16 16 C 0.13 2.10 4.09 -67.02 -0.27 1.83 16 17 C -0.17 -2.75 7.36 -25.92 -0.19 -2.94 16 18 C 0.17 3.35 4.55 -67.12 -0.31 3.04 16 19 N -0.71 -17.77 5.31 -52.64 -0.28 -18.05 16 20 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C -0.18 -3.06 7.32 -25.82 -0.19 -3.25 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 31 H 0.08 0.65 6.35 -51.92 -0.33 0.32 16 32 H 0.10 0.76 6.09 -51.93 -0.32 0.45 16 33 H 0.11 0.77 8.02 -51.93 -0.42 0.36 16 34 H 0.15 1.56 8.05 -52.49 -0.42 1.14 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 1.22 6.65 -52.48 -0.35 0.87 16 40 H 0.12 2.43 7.24 -51.93 -0.38 2.05 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 43 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 44 H 0.39 10.53 7.90 -40.82 -0.32 10.20 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -35.77 385.30 -10.35 -46.11 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.50 Total: 10.24 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -4.49 Total: -8.73 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.22 Total: -60.68 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.77 -10.35 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998926286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.712 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds