Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99790 * 2 1 4 4 O 1.21281 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00022 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46755 * 180.02562 * 5 3 2 7 7 C 1.39360 * 119.46572 * 269.72657 * 6 5 3 8 8 C 1.36135 * 120.86506 * 179.71503 * 7 6 5 9 9 C 1.40425 * 119.61638 * 0.55627 * 8 7 6 10 10 C 1.40767 * 121.37767 * 179.70708 * 9 8 7 11 11 C 1.36576 * 118.15485 * 180.02562 * 10 9 8 12 12 C 1.39340 * 119.92955 * 0.02562 * 11 10 9 13 13 N 1.31078 * 121.74991 * 359.97438 * 12 11 10 14 14 C 1.33686 * 121.32562 * 0.02562 * 13 12 11 15 15 C 1.36076 * 119.46538 * 90.00396 * 6 5 3 16 16 C 1.46499 * 119.99982 * 179.97438 * 2 1 3 17 17 C 1.53782 * 113.61652 * 60.00231 * 16 2 1 18 18 C 1.53781 * 87.08260 * 220.01840 * 17 16 2 19 19 N 1.46497 * 113.61305 * 270.79919 * 18 17 16 20 20 C 1.36944 * 119.99791 * 203.46713 * 19 18 17 21 21 H 1.07993 * 120.00042 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46991 * 60.00036 * 24 22 20 26 26 H 1.48495 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47014 * 300.00285 * 24 22 20 28 28 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 29 29 H 1.08997 * 109.47336 * 269.99759 * 1 2 3 30 30 H 1.09000 * 109.47075 * 30.00567 * 1 2 3 31 31 H 1.09009 * 109.46825 * 149.99777 * 1 2 3 32 32 H 1.08996 * 109.47239 * 299.99754 * 5 3 2 33 33 H 1.09004 * 109.46970 * 60.00328 * 5 3 2 34 34 H 1.08005 * 119.56353 * 359.97438 * 7 6 5 35 35 H 1.08005 * 120.19383 * 180.27781 * 8 7 6 36 36 H 1.08002 * 120.92306 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.03707 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.12281 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.12470 * 359.97326 * 15 6 5 40 40 H 1.08997 * 112.90648 * 191.25794 * 16 2 1 41 41 H 1.09001 * 113.61250 * 105.46657 * 17 16 2 42 42 H 1.08997 * 113.61225 * 334.56498 * 17 16 2 43 43 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 44 44 H 0.96995 * 120.00146 * 23.47603 * 19 18 17 45 45 H 0.96996 * 120.00281 * 179.97438 * 23 22 20 46 46 H 1.08993 * 113.61491 * 89.15923 * 28 18 17 47 47 H 1.09000 * 113.61138 * 220.06261 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3647 3.6177 -0.0011 7 6 2.8058 4.1430 1.2120 8 6 3.6945 5.1738 1.2448 9 6 4.1647 5.7233 0.0411 10 6 5.0791 6.7934 0.0318 11 6 5.4926 7.2773 -1.1766 12 6 5.0085 6.7116 -2.3545 13 7 4.1570 5.7152 -2.3420 14 6 3.7126 5.1951 -1.1935 15 6 2.7996 4.1260 -1.1861 16 6 2.1975 -1.2687 0.0006 17 6 1.8955 -2.1550 -1.2193 18 6 1.9130 -3.3527 -0.2548 19 7 3.2394 -3.9515 -0.0869 20 6 3.3561 -5.2537 0.3206 21 1 2.4704 -5.8392 0.5178 22 6 4.6129 -5.8213 0.4792 23 7 5.6924 -5.1078 0.2383 24 14 4.7721 -7.5978 1.0345 25 1 4.0988 -8.4855 0.0527 26 1 6.2091 -7.9607 1.1266 27 1 4.1349 -7.7592 2.3661 28 6 1.5384 -2.3625 0.8606 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.7591 2.5298 -0.8908 33 1 0.7583 2.5302 0.8892 34 1 2.4409 3.7242 2.1382 35 1 4.0325 5.5696 2.1912 36 1 5.4437 7.2200 0.9546 37 1 6.1933 8.0979 -1.2192 38 1 5.3439 7.1047 -3.3028 39 1 2.4446 3.7098 -2.1173 40 1 3.2624 -1.1437 0.1965 41 1 2.6999 -2.1747 -1.9546 42 1 0.9184 -1.9671 -1.6643 43 1 1.1383 -4.0911 -0.4615 44 1 4.0349 -3.4257 -0.2643 45 1 6.5706 -5.5043 0.3495 46 1 0.4636 -2.2314 0.9853 47 1 2.0550 -2.5495 1.8020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998978461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = 59.456370 kcal Electronic energy + Delta-G solvation = -28005.696331 eV Core-core repulsion = 24154.506782 eV Total energy + Delta-G solvation = -3851.189550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07692 -40.09857 -38.32577 -37.18347 -34.80119 -33.87291 -33.02724 -32.10896 -30.33766 -29.82312 -28.11893 -27.05033 -25.11859 -24.57994 -24.18804 -23.33439 -22.46749 -22.14248 -19.55935 -18.24150 -18.07389 -17.48658 -17.21955 -17.06418 -16.86134 -15.99641 -15.59020 -14.88095 -14.71050 -14.63132 -14.54003 -14.28981 -13.99025 -13.73446 -13.27788 -13.24452 -13.12870 -13.03933 -12.70837 -12.31962 -12.27648 -11.96150 -11.95401 -11.79164 -11.63713 -11.55713 -11.46654 -10.85049 -10.75412 -10.75046 -10.24178 -10.18677 -9.83311 -9.70795 -9.67030 -9.53292 -8.90560 -8.85073 -8.42731 -8.38832 -7.00183 -5.77878 -3.08430 0.19915 0.59947 1.80525 2.64688 2.71727 3.18802 3.43636 3.47716 3.49419 3.91334 4.03055 4.33370 4.41752 4.56536 4.57080 4.62753 4.64596 4.75615 4.87705 5.01903 5.03658 5.15873 5.16344 5.17260 5.22592 5.32233 5.40486 5.43463 5.51865 5.58050 5.62530 5.70796 5.75597 5.87259 5.87807 6.00715 6.09040 6.14058 6.23993 6.27865 6.33286 6.42490 6.57666 6.64473 6.71884 6.80385 7.04085 7.55575 7.69236 7.71166 8.30490 8.40106 9.50570 10.07420 10.41361 11.44097 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.002118 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.707856 B =13214.159764 C =14092.224997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.604 5.604 3 C 0.510 3.490 4 O -0.528 6.528 5 C -0.105 4.105 6 C -0.043 4.043 7 C -0.096 4.096 8 C -0.098 4.098 9 C -0.103 4.103 10 C -0.057 4.057 11 C -0.180 4.180 12 C 0.127 3.873 13 N -0.473 5.473 14 C 0.130 3.870 15 C -0.079 4.079 16 C 0.125 3.875 17 C -0.168 4.168 18 C 0.172 3.828 19 N -0.706 5.706 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.181 4.181 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 26.291 -0.298 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.337 5.337 3 C 0.297 3.703 4 O -0.404 6.404 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.105 4.105 10 C -0.083 4.083 11 C -0.200 4.200 12 C -0.046 4.046 13 N -0.181 5.181 14 C 0.009 3.991 15 C -0.098 4.098 16 C 0.023 3.977 17 C -0.208 4.208 18 C 0.059 3.941 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.224 4.224 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.337 25.631 -0.996 27.655 hybrid contribution 0.708 -0.391 1.097 1.363 sum -9.629 25.240 0.101 27.015 Atomic orbital electron populations 1.21761 0.80139 1.03109 1.01782 1.47976 1.06656 1.06175 1.72847 1.20431 0.88160 0.84954 0.76764 1.90761 1.13767 1.87136 1.48750 1.20808 0.97545 0.90766 1.05322 1.19066 0.97149 0.95200 0.93090 1.20785 0.97168 0.95885 0.97582 1.20908 0.97167 0.96825 0.96761 1.18848 0.99139 0.97837 0.94656 1.21473 0.94118 0.93847 0.98870 1.21868 1.02349 1.02286 0.93494 1.22950 0.91964 0.91229 0.98423 1.68025 1.11118 1.10189 1.28744 1.18798 0.96478 0.95809 0.88023 1.20580 0.96209 0.94730 0.98279 1.22775 0.97760 0.79570 0.97602 1.23936 1.01422 0.97740 0.97689 1.20903 0.89888 0.91272 0.92026 1.42211 1.01019 1.11557 1.79652 1.19215 0.92324 0.88069 1.38115 0.90993 1.24797 0.95417 0.98377 1.02190 1.69663 0.97139 1.36104 1.54804 0.86239 0.76634 0.84608 0.78501 1.21182 1.21669 1.21209 1.24328 0.99310 0.97740 1.00973 0.92566 0.91368 0.90485 0.87745 0.87742 0.85493 0.85144 0.84481 0.84619 0.82493 0.84842 0.86498 0.91126 0.90473 0.91540 0.77925 0.93296 0.91031 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 8.85 59.85 0.53 1.20 16 2 N -0.60 -8.16 3.08 -172.89 -0.53 -8.69 16 3 C 0.51 7.36 7.67 -10.99 -0.08 7.28 16 4 O -0.53 -10.26 15.52 5.56 0.09 -10.18 16 5 C -0.10 -1.01 4.35 -29.03 -0.13 -1.14 16 6 C -0.04 -0.49 4.34 -104.98 -0.46 -0.95 16 7 C -0.10 -1.02 9.59 -39.92 -0.38 -1.40 16 8 C -0.10 -0.99 9.77 -39.51 -0.39 -1.38 16 9 C -0.10 -1.17 5.74 -106.80 -0.61 -1.78 16 10 C -0.06 -0.50 9.90 -39.23 -0.39 -0.89 16 11 C -0.18 -1.42 10.03 -39.77 -0.40 -1.82 16 12 C 0.13 1.21 11.15 -17.46 -0.19 1.02 16 13 N -0.47 -6.08 10.34 -10.97 -0.11 -6.20 16 14 C 0.13 1.71 6.60 -84.86 -0.56 1.15 16 15 C -0.08 -1.01 9.58 -39.47 -0.38 -1.38 16 16 C 0.13 2.13 4.09 -67.02 -0.27 1.86 16 17 C -0.17 -2.82 7.36 -25.92 -0.19 -3.01 16 18 C 0.17 3.38 4.55 -67.12 -0.31 3.08 16 19 N -0.71 -17.87 5.31 -52.64 -0.28 -18.15 16 20 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 24 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C -0.18 -3.08 7.32 -25.82 -0.19 -3.27 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 31 H 0.08 0.67 6.35 -51.92 -0.33 0.34 16 32 H 0.10 0.77 7.33 -51.93 -0.38 0.39 16 33 H 0.10 0.73 8.04 -51.93 -0.42 0.32 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.44 7.24 -51.93 -0.38 2.06 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.07 6.92 -51.93 -0.36 0.71 16 43 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 44 H 0.39 10.59 7.90 -40.82 -0.32 10.27 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -36.02 388.51 -10.57 -46.59 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.64 Total: 10.02 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.64 Total: -8.86 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.20 Total: -60.86 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.02 -10.57 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998978461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.051 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds