Wall clock time and date at job start Sat Apr 11 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 120.00242 * 2 1 4 4 O 1.21283 * 119.99855 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99929 * 359.97438 * 3 2 1 6 6 C 1.50701 * 109.47267 * 180.02562 * 5 3 2 7 7 C 1.36247 * 120.25630 * 264.72246 * 6 5 3 8 8 C 1.39336 * 121.01581 * 179.76789 * 7 6 5 9 9 C 1.36203 * 121.08754 * 0.51101 * 8 7 6 10 10 C 1.40334 * 119.51382 * 359.75113 * 9 8 7 11 11 C 1.40440 * 122.08766 * 179.97438 * 10 9 8 12 12 N 1.31241 * 119.88216 * 180.02562 * 11 10 9 13 13 C 1.32611 * 122.78312 * 0.02562 * 12 11 10 14 14 C 1.36174 * 121.88002 * 359.97438 * 13 12 11 15 15 C 1.40185 * 120.26077 * 85.00269 * 6 5 3 16 16 C 1.46503 * 120.00152 * 180.02562 * 2 1 3 17 17 C 1.53783 * 113.61322 * 243.22522 * 16 2 1 18 18 C 1.53782 * 87.08412 * 89.11281 * 17 16 2 19 19 N 1.46503 * 113.61371 * 270.80170 * 18 17 16 20 20 C 1.36941 * 119.99749 * 202.16680 * 19 18 17 21 21 H 1.07998 * 119.99972 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99472 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99660 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47141 * 60.00130 * 24 22 20 26 26 H 1.48503 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46842 * 299.99933 * 24 22 20 28 28 C 1.53785 * 87.17175 * 25.38933 * 18 17 16 29 29 H 1.09003 * 109.46988 * 268.86408 * 1 2 3 30 30 H 1.09001 * 109.46645 * 28.86149 * 1 2 3 31 31 H 1.09000 * 109.46995 * 148.85938 * 1 2 3 32 32 H 1.08998 * 109.47294 * 300.00262 * 5 3 2 33 33 H 1.08997 * 109.47187 * 60.00114 * 5 3 2 34 34 H 1.08001 * 119.49299 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.45712 * 180.24444 * 8 7 6 36 36 H 1.08002 * 120.24659 * 179.72954 * 9 8 7 37 37 H 1.08001 * 120.05646 * 0.05490 * 11 10 9 38 38 H 1.07995 * 119.05947 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.66195 * 180.02562 * 14 13 12 40 40 H 1.08990 * 112.91292 * 111.96659 * 16 2 1 41 41 H 1.08995 * 113.61593 * 334.56175 * 17 16 2 42 42 H 1.08999 * 113.61358 * 203.66010 * 17 16 2 43 43 H 1.08997 * 113.61646 * 139.97969 * 18 17 16 44 44 H 0.97003 * 119.99766 * 22.16573 * 19 18 17 45 45 H 0.97002 * 120.00448 * 180.02562 * 23 22 20 46 46 H 1.08996 * 113.61580 * 89.16153 * 28 18 17 47 47 H 1.09007 * 113.61490 * 220.06306 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 6 2.7287 4.2104 1.1705 8 6 3.6364 5.2673 1.1889 9 6 4.1801 5.7475 0.0361 10 6 3.8251 5.1657 -1.1906 11 6 4.3522 5.6180 -2.4112 12 7 3.9896 5.0422 -3.5334 13 6 3.1312 4.0324 -3.5777 14 6 2.5641 3.5206 -2.4504 15 6 2.9041 4.0856 -1.2075 16 6 2.1975 -1.2687 -0.0006 17 6 3.0553 -1.4854 1.2573 18 6 1.8171 -2.1392 1.8933 19 7 0.9459 -1.1905 2.5914 20 6 0.0889 -1.6350 3.5626 21 1 0.0556 -2.6847 3.8143 22 6 -0.7362 -0.7360 4.2243 23 7 -0.6953 0.5433 3.9180 24 14 -1.9047 -1.3421 5.5498 25 1 -1.1269 -1.9842 6.6395 26 1 -2.6702 -0.1936 6.0977 27 1 -2.8465 -2.3302 4.9651 28 6 1.3511 -2.4675 0.4651 29 1 -0.3633 -0.0204 1.0275 30 1 -0.3632 0.9000 -0.4961 31 1 -0.3633 -0.8796 -0.5314 32 1 0.7592 2.5298 -0.8908 33 1 0.7585 2.5303 0.8891 34 1 2.3102 3.8527 2.0997 35 1 3.9101 5.7161 2.1324 36 1 4.8792 6.5703 0.0658 37 1 5.0550 6.4379 -2.4262 38 1 2.8753 3.6030 -4.5350 39 1 1.8675 2.6974 -2.5093 40 1 2.7349 -1.4480 -0.9317 41 1 3.3582 -0.5584 1.7442 42 1 3.8848 -2.1761 1.1065 43 1 2.0475 -3.0211 2.4910 44 1 0.9761 -0.2476 2.3655 45 1 -1.2717 1.1716 4.3807 46 1 1.7138 -3.4273 0.0972 47 1 0.2802 -2.3323 0.3132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998990042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:00 Heat of formation + Delta-G solvation = 67.645034 kcal Electronic energy + Delta-G solvation = -29797.758909 eV Core-core repulsion = 25946.924446 eV Total energy + Delta-G solvation = -3850.834463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00324 -40.02625 -37.99157 -37.13294 -34.19891 -33.82444 -33.15533 -31.30321 -30.53265 -29.95394 -27.68813 -26.77249 -24.96828 -24.24414 -24.05910 -23.57625 -22.89768 -21.25653 -19.45657 -18.03933 -17.87718 -17.50239 -17.07218 -16.74964 -16.37439 -15.82567 -15.45856 -14.94016 -14.75968 -14.44612 -14.24549 -14.18849 -13.76574 -13.73940 -13.26588 -13.03665 -12.99038 -12.70652 -12.45948 -12.31493 -11.97974 -11.87961 -11.73702 -11.55202 -11.40182 -11.26012 -10.96238 -10.91040 -10.80061 -10.31492 -10.15902 -10.13082 -9.82392 -9.63727 -9.52946 -9.28857 -9.00080 -8.94628 -8.08391 -7.99349 -7.06117 -5.89165 -3.16698 0.35210 0.93849 1.90857 2.99411 3.05630 3.36718 3.41322 3.42180 3.43153 4.09067 4.33690 4.46024 4.49949 4.70953 4.78741 4.83796 4.88063 5.00806 5.13842 5.18055 5.22105 5.31920 5.37085 5.42686 5.45331 5.53361 5.57457 5.69519 5.79632 5.81831 5.84039 5.85722 5.97816 6.03321 6.04839 6.16226 6.30801 6.40224 6.44605 6.56630 6.60417 6.63181 6.67856 6.72917 6.85807 6.87979 7.13343 7.62637 7.80293 7.92832 8.31448 8.58214 9.42676 9.99719 10.36620 11.33223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.003324 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.982595 B = 8421.469098 C = 9448.214411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.586 5.586 3 C 0.520 3.480 4 O -0.538 6.538 5 C -0.107 4.107 6 C -0.048 4.048 7 C -0.085 4.085 8 C -0.109 4.109 9 C -0.097 4.097 10 C -0.111 4.111 11 C 0.142 3.858 12 N -0.493 5.493 13 C 0.069 3.931 14 C -0.146 4.146 15 C -0.008 4.008 16 C 0.130 3.870 17 C -0.161 4.161 18 C 0.166 3.834 19 N -0.704 5.704 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.183 4.183 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 7.353 -11.400 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.319 5.319 3 C 0.307 3.693 4 O -0.416 6.416 5 C -0.147 4.147 6 C -0.048 4.048 7 C -0.104 4.104 8 C -0.127 4.127 9 C -0.117 4.117 10 C -0.113 4.113 11 C -0.030 4.030 12 N -0.201 5.201 13 C -0.074 4.074 14 C -0.165 4.165 15 C -0.013 4.013 16 C 0.027 3.973 17 C -0.201 4.201 18 C 0.053 3.947 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.224 4.224 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.873 7.456 -12.116 15.392 hybrid contribution -1.142 -0.470 1.495 1.939 sum 4.731 6.987 -10.622 13.565 Atomic orbital electron populations 1.22137 0.78886 1.01318 1.05387 1.47454 1.07132 1.04797 1.72559 1.20221 0.87834 0.84658 0.76537 1.90685 1.13743 1.87338 1.49805 1.20768 0.97571 0.90463 1.05864 1.19104 0.97561 0.95829 0.92340 1.20992 0.96305 0.95035 0.98115 1.20916 0.96712 0.96587 0.98513 1.20910 0.99710 0.99738 0.91346 1.18973 0.99100 0.97614 0.95649 1.23123 0.96095 0.97171 0.86614 1.67375 1.12941 1.09396 1.30368 1.22074 0.93752 0.93211 0.98370 1.21879 1.01439 1.00628 0.92565 1.17949 0.95286 0.94437 0.93610 1.21770 0.94425 0.83669 0.97464 1.23704 0.97717 1.01803 0.96885 1.21145 0.89767 0.93280 0.90467 1.42316 1.43671 1.06258 1.42127 1.19266 1.13235 0.93310 1.11427 0.91135 1.24689 1.00334 0.95393 1.00179 1.69613 1.42508 1.01067 1.44965 0.86266 0.80741 0.77311 0.81839 1.21330 1.21697 1.21292 1.24236 1.00584 0.95661 1.01897 0.88263 0.92274 0.91494 0.88295 0.86514 0.84994 0.85476 0.85150 0.82247 0.83313 0.84978 0.91413 0.90803 0.90028 0.92121 0.77684 0.93402 0.90257 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.65 59.85 0.52 1.53 16 2 N -0.59 -9.79 2.08 -172.90 -0.36 -10.15 16 3 C 0.52 9.03 7.36 -10.99 -0.08 8.94 16 4 O -0.54 -10.99 14.99 5.56 0.08 -10.91 16 5 C -0.11 -1.55 3.82 -29.04 -0.11 -1.66 16 6 C -0.05 -0.70 4.38 -104.61 -0.46 -1.16 16 7 C -0.09 -1.20 9.58 -39.89 -0.38 -1.58 16 8 C -0.11 -1.30 9.94 -39.90 -0.40 -1.69 16 9 C -0.10 -1.09 9.81 -39.53 -0.39 -1.47 16 10 C -0.11 -1.45 5.74 -106.86 -0.61 -2.07 16 11 C 0.14 1.68 11.05 -16.98 -0.19 1.49 16 12 N -0.49 -6.55 10.30 -13.15 -0.14 -6.68 16 13 C 0.07 0.86 11.07 -17.96 -0.20 0.66 16 14 C -0.15 -1.92 9.36 -39.40 -0.37 -2.29 16 15 C -0.01 -0.11 5.75 -106.82 -0.61 -0.72 16 16 C 0.13 2.18 4.13 -67.02 -0.28 1.90 16 17 C -0.16 -2.93 7.13 -25.92 -0.18 -3.11 16 18 C 0.17 3.23 4.55 -67.11 -0.31 2.93 16 19 N -0.70 -16.50 4.06 -52.63 -0.21 -16.71 16 20 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -25.57 13.06 55.49 0.72 -24.84 16 24 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.18 -2.97 7.17 -25.82 -0.19 -3.16 16 29 H 0.10 1.95 6.15 -51.93 -0.32 1.63 16 30 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 31 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 32 H 0.10 1.18 6.05 -51.93 -0.31 0.86 16 33 H 0.12 1.74 8.01 -51.93 -0.42 1.32 16 34 H 0.13 1.84 8.05 -52.49 -0.42 1.42 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.13 1.56 6.64 -52.49 -0.35 1.22 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.56 7.18 -51.93 -0.37 1.19 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 44 H 0.39 9.48 5.53 -40.82 -0.23 9.26 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.33 5.90 -51.93 -0.31 1.02 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -31.47 377.69 -10.04 -41.50 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.32 Total: 14.15 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.48 Total: -8.24 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.02 Total: -58.39 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.47 -10.04 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998990042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.149 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds