Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00104 * 2 1 4 4 O 1.21574 * 120.00273 * 174.53100 * 3 2 1 5 5 C 1.47647 * 119.99810 * 354.80168 * 3 2 1 6 6 C 1.39716 * 120.07793 * 335.63195 * 5 3 2 7 7 C 1.37713 * 119.91969 * 179.78722 * 6 5 3 8 8 C 1.39059 * 120.07773 * 0.46715 * 7 6 5 9 9 N 1.39803 * 119.92074 * 179.76285 * 8 7 6 10 10 C 1.36644 * 125.67666 * 179.71557 * 9 8 7 11 11 C 1.34811 * 108.19245 * 179.82936 * 10 9 8 12 12 C 1.40986 * 107.48542 * 0.42691 * 11 10 9 13 13 C 1.34815 * 107.47982 * 359.73172 * 12 11 10 14 14 C 1.39057 * 120.15742 * 359.78679 * 8 7 6 15 15 C 1.37707 * 120.07865 * 359.97438 * 14 8 7 16 16 C 1.46497 * 120.00123 * 180.02562 * 2 1 3 17 17 C 1.53788 * 113.61670 * 37.49270 * 16 2 1 18 18 C 1.53782 * 87.08180 * 220.02541 * 17 16 2 19 19 N 1.46494 * 113.69267 * 139.99543 * 18 17 16 20 20 C 1.36931 * 120.00145 * 107.46051 * 19 18 17 21 21 H 1.07998 * 120.00248 * 359.97438 * 20 19 18 22 22 C 1.38819 * 119.99936 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00067 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00022 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47013 * 89.99761 * 24 22 20 26 26 H 1.48497 * 109.47021 * 210.00063 * 24 22 20 27 27 H 1.48496 * 109.46706 * 330.00010 * 24 22 20 28 28 C 1.53785 * 87.08307 * 25.43100 * 18 17 16 29 29 H 1.09002 * 109.47306 * 95.76377 * 1 2 3 30 30 H 1.08998 * 109.46757 * 215.76114 * 1 2 3 31 31 H 1.08998 * 109.46927 * 335.76195 * 1 2 3 32 32 H 1.08005 * 120.04395 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.96570 * 180.20611 * 7 6 5 34 34 H 1.07994 * 125.90004 * 0.02562 * 10 9 8 35 35 H 1.08004 * 126.25871 * 180.15573 * 11 10 9 36 36 H 1.08003 * 126.25951 * 179.73160 * 12 11 10 37 37 H 1.07995 * 125.90199 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.95911 * 179.97438 * 14 8 7 39 39 H 1.08002 * 120.03970 * 179.97438 * 15 14 8 40 40 H 1.09002 * 112.85409 * 168.80101 * 16 2 1 41 41 H 1.09006 * 113.60824 * 334.56797 * 17 16 2 42 42 H 1.08991 * 113.61306 * 105.47148 * 17 16 2 43 43 H 1.09006 * 113.61210 * 270.88225 * 18 17 16 44 44 H 0.97006 * 119.99604 * 287.45889 * 19 18 17 45 45 H 0.96996 * 120.00171 * 180.02562 * 23 22 20 46 46 H 1.09002 * 113.60914 * 220.02249 * 28 18 17 47 47 H 1.08995 * 113.61140 * 89.11690 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1696 0.1003 5 6 1.4052 2.4432 -0.1159 6 6 0.1446 2.4739 -0.7175 7 6 -0.5388 3.6652 -0.8199 8 6 0.0286 4.8381 -0.3341 9 7 -0.6659 6.0464 -0.4442 10 6 -0.2242 7.2624 -0.0044 11 6 -1.1670 8.1820 -0.2925 12 6 -2.2340 7.5111 -0.9241 13 6 -1.9018 6.2070 -1.0043 14 6 1.2854 4.8121 0.2605 15 6 1.9723 3.6237 0.3707 16 6 2.1976 -1.2687 -0.0006 17 6 1.5374 -2.3609 -0.8587 18 6 1.9129 -3.3526 0.2550 19 7 0.8730 -4.3460 0.5339 20 6 1.0476 -5.6475 0.1458 21 1 1.9518 -5.9417 -0.3663 22 6 0.0623 -6.5889 0.4106 23 7 0.2303 -7.8400 0.0380 24 14 -1.5021 -6.0800 1.2957 25 1 -2.5200 -5.6596 0.2995 26 1 -2.0223 -7.2280 2.0809 27 1 -1.2073 -4.9477 2.2101 28 6 1.8954 -2.1549 1.2194 29 1 -0.3634 -0.1032 -1.0225 30 1 -0.3633 -0.8339 0.6006 31 1 -0.3633 0.9371 0.4219 32 1 -0.2952 1.5639 -1.0983 33 1 -1.5147 3.6892 -1.2818 34 1 0.7186 7.4541 0.4861 35 1 -1.1162 9.2386 -0.0748 36 1 -3.1501 7.9599 -1.2789 37 1 -2.5079 5.4245 -1.4362 38 1 1.7232 5.7251 0.6364 39 1 2.9486 3.6043 0.8323 40 1 3.2625 -1.1425 -0.1956 41 1 0.4624 -2.2291 -0.9817 42 1 2.0527 -2.5467 -1.8010 43 1 2.9001 -3.7974 0.1290 44 1 0.0606 -4.0817 0.9935 45 1 -0.4583 -8.4977 0.2227 46 1 2.6999 -2.1747 1.9547 47 1 0.9183 -1.9669 1.6644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999066747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 113.430080 kcal Electronic energy + Delta-G solvation = -27983.276282 eV Core-core repulsion = 24134.427208 eV Total energy + Delta-G solvation = -3848.849074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09234 -40.73739 -39.04396 -37.86433 -35.25601 -33.76537 -33.04191 -31.77543 -30.64058 -29.41269 -29.29095 -27.44947 -25.35889 -25.14512 -23.80930 -23.45898 -22.12107 -20.70644 -20.40896 -19.94152 -19.27574 -18.81484 -17.60134 -17.33841 -16.75991 -15.79173 -15.53970 -15.43592 -15.23712 -15.03855 -14.76516 -14.30730 -14.19906 -14.00362 -13.93730 -13.41701 -13.23342 -12.99703 -12.93244 -12.76081 -12.73014 -12.46592 -12.23441 -12.10963 -11.98884 -11.79668 -11.35488 -11.05484 -10.77084 -10.57879 -10.31416 -10.22766 -10.15280 -9.87943 -9.62947 -9.55668 -8.97695 -8.70822 -8.66276 -8.42482 -7.34784 -5.83895 -3.20254 0.15640 0.79284 1.82849 2.35383 2.56714 2.65785 2.85659 3.30557 3.32313 3.39367 3.40230 4.10631 4.20719 4.24084 4.51593 4.52143 4.62581 4.68834 4.75158 4.89575 4.91795 4.96944 5.01719 5.11944 5.16606 5.24614 5.25946 5.36008 5.42007 5.47136 5.53207 5.58520 5.64945 5.69470 5.79680 5.82012 5.87878 5.99288 6.08262 6.13214 6.16697 6.26628 6.41494 6.45489 6.60011 6.72511 6.84587 6.95747 7.31211 7.91902 8.01986 8.35448 9.12449 9.84755 10.04090 11.34153 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.002057 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.216966 B =13606.916755 C =14641.781453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.557 3.443 4 O -0.538 6.538 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.151 4.151 8 C 0.163 3.837 9 N -0.399 5.399 10 C -0.015 4.015 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.014 4.014 14 C -0.151 4.151 15 C -0.031 4.031 16 C 0.118 3.882 17 C -0.174 4.174 18 C 0.176 3.824 19 N -0.733 5.733 20 C -0.250 4.250 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.931 5.931 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.166 4.166 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 31.394 -0.809 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.323 5.323 3 C 0.346 3.654 4 O -0.416 6.416 5 C -0.148 4.148 6 C -0.091 4.091 7 C -0.171 4.171 8 C 0.069 3.931 9 N -0.071 5.071 10 C -0.141 4.141 11 C -0.213 4.213 12 C -0.213 4.213 13 C -0.140 4.140 14 C -0.171 4.171 15 C -0.050 4.050 16 C 0.015 3.985 17 C -0.216 4.216 18 C 0.064 3.936 19 N -0.373 5.373 20 C -0.380 4.380 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.578 5.578 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.206 4.206 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.420 30.863 -0.817 30.968 hybrid contribution -1.409 0.338 0.582 1.562 sum -3.829 31.200 -0.235 31.435 Atomic orbital electron populations 1.22398 0.80120 1.03818 1.01937 1.47727 1.06764 1.05860 1.71937 1.18221 0.87061 0.83419 0.76737 1.90776 1.13632 1.87163 1.50053 1.20023 0.95944 0.94338 1.04475 1.22027 0.92935 0.98663 0.95463 1.20788 1.01670 0.90761 1.03891 1.18108 0.92329 0.84690 0.97947 1.41664 1.14934 1.05506 1.44997 1.21964 1.01845 0.83362 1.06935 1.21045 0.95123 0.99264 1.05852 1.21050 1.00798 0.92980 1.06464 1.21971 0.87450 0.98907 1.05713 1.20762 0.93646 0.99387 1.03297 1.21099 0.99211 0.89979 0.94751 1.22650 0.97420 0.79948 0.98507 1.24295 1.01012 0.96310 0.99965 1.21320 0.93745 0.86754 0.91819 1.42694 1.18476 1.06588 1.69529 1.19143 1.04182 0.83188 1.31457 0.89010 1.24703 0.98268 0.95330 1.00734 1.69698 1.34907 1.01412 1.51792 0.86557 0.84650 0.77536 0.79810 1.21057 1.21653 1.20359 1.23953 1.01916 0.97235 0.97505 0.91702 0.90378 0.89818 0.82559 0.84592 0.81667 0.84060 0.84038 0.81612 0.84623 0.83887 0.86446 0.89979 0.91519 0.89342 0.80517 0.92974 0.91278 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 7.22 59.85 0.43 0.99 16 2 N -0.59 -7.35 3.08 -174.18 -0.54 -7.88 16 3 C 0.56 7.42 7.49 -12.42 -0.09 7.33 16 4 O -0.54 -8.93 16.09 5.30 0.09 -8.84 16 5 C -0.14 -1.51 5.50 -104.95 -0.58 -2.09 16 6 C -0.07 -0.60 7.52 -39.22 -0.29 -0.89 16 7 C -0.15 -1.15 9.43 -39.47 -0.37 -1.53 16 8 C 0.16 1.38 6.62 -83.61 -0.55 0.82 16 9 N -0.40 -3.35 2.97 -60.90 -0.18 -3.53 16 10 C -0.02 -0.12 10.73 -16.62 -0.18 -0.29 16 11 C -0.19 -1.42 10.86 -39.76 -0.43 -1.85 16 12 C -0.19 -1.42 10.86 -39.75 -0.43 -1.85 16 13 C -0.01 -0.11 10.73 -16.62 -0.18 -0.29 16 14 C -0.15 -1.22 9.43 -39.47 -0.37 -1.60 16 15 C -0.03 -0.29 9.58 -39.22 -0.38 -0.67 16 16 C 0.12 1.66 4.19 -67.11 -0.28 1.38 16 17 C -0.17 -2.67 7.36 -25.91 -0.19 -2.86 16 18 C 0.18 3.17 4.48 -67.12 -0.30 2.87 16 19 N -0.73 -16.48 5.21 -52.64 -0.27 -16.75 16 20 C -0.25 -6.82 10.45 -15.06 -0.16 -6.98 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 24 Si 0.88 21.35 27.74 -169.99 -4.71 16.63 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 28 C -0.17 -2.51 7.40 -25.91 -0.19 -2.70 16 29 H 0.06 0.52 7.04 -51.93 -0.37 0.15 16 30 H 0.08 0.78 6.60 -51.93 -0.34 0.44 16 31 H 0.08 0.64 5.11 -51.93 -0.27 0.38 16 32 H 0.16 1.07 4.40 -52.48 -0.23 0.83 16 33 H 0.14 0.75 6.68 -52.49 -0.35 0.40 16 34 H 0.17 0.86 6.99 -52.49 -0.37 0.50 16 35 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.17 0.86 6.99 -52.49 -0.37 0.50 16 38 H 0.14 0.81 6.68 -52.48 -0.35 0.46 16 39 H 0.14 1.31 7.83 -52.49 -0.41 0.90 16 40 H 0.12 1.75 7.27 -51.93 -0.38 1.38 16 41 H 0.08 1.24 6.79 -51.93 -0.35 0.88 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 44 H 0.36 7.92 5.79 -40.82 -0.24 7.69 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.17 6.83 -51.93 -0.35 0.81 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.81 376.97 -9.88 -43.69 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.07 Total: 9.01 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -4.64 Total: -10.14 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.22 Total: -56.04 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.81 -9.88 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999066747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.123 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds