Wall clock time and date at job start Sat Apr 11 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99559 * 2 1 4 4 O 1.21284 * 119.99967 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00344 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.47382 * 179.97438 * 5 3 2 7 7 C 1.36177 * 120.19224 * 264.72516 * 6 5 3 8 8 C 1.39308 * 120.86338 * 179.72388 * 7 6 5 9 9 C 1.36118 * 121.06929 * 0.58231 * 8 7 6 10 10 C 1.40555 * 119.74620 * 359.70210 * 9 8 7 11 11 N 1.33692 * 121.08734 * 180.02562 * 10 9 8 12 12 C 1.31080 * 121.32432 * 180.02562 * 11 10 9 13 13 C 1.39335 * 121.75314 * 359.96328 * 12 11 10 14 14 C 1.36574 * 119.93929 * 0.02562 * 13 12 11 15 15 C 1.40387 * 120.19064 * 85.00568 * 6 5 3 16 16 C 1.46494 * 120.00378 * 180.02562 * 2 1 3 17 17 C 1.53775 * 113.61270 * 243.17310 * 16 2 1 18 18 C 1.53779 * 87.08366 * 89.11475 * 17 16 2 19 19 N 1.46500 * 113.61561 * 270.79812 * 18 17 16 20 20 C 1.36933 * 120.00144 * 200.64911 * 19 18 17 21 21 H 1.08000 * 120.00378 * 3.61176 * 20 19 18 22 22 C 1.38815 * 119.99991 * 183.60393 * 20 19 18 23 23 N 1.31614 * 120.00051 * 183.97991 * 22 20 19 24 24 Si 1.86801 * 119.99970 * 3.98670 * 22 20 19 25 25 H 1.48498 * 109.47478 * 84.36588 * 24 22 20 26 26 H 1.48494 * 109.47262 * 204.37236 * 24 22 20 27 27 H 1.48507 * 109.46958 * 324.36937 * 24 22 20 28 28 C 1.53782 * 87.17264 * 25.38980 * 18 17 16 29 29 H 1.09000 * 109.46928 * 270.88580 * 1 2 3 30 30 H 1.08995 * 109.47102 * 30.89019 * 1 2 3 31 31 H 1.09003 * 109.46543 * 150.89419 * 1 2 3 32 32 H 1.08999 * 109.47356 * 300.00565 * 5 3 2 33 33 H 1.09008 * 109.46795 * 60.00025 * 5 3 2 34 34 H 1.07997 * 119.56556 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.46654 * 180.26546 * 8 7 6 36 36 H 1.07993 * 120.12776 * 179.68432 * 9 8 7 37 37 H 1.07998 * 119.11868 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.03089 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.92403 * 180.02562 * 14 13 12 40 40 H 1.09001 * 112.91371 * 111.91937 * 16 2 1 41 41 H 1.08995 * 113.62047 * 334.56266 * 17 16 2 42 42 H 1.09000 * 113.61667 * 203.66248 * 17 16 2 43 43 H 1.09005 * 113.61474 * 139.97595 * 18 17 16 44 44 H 0.97000 * 119.99197 * 20.65633 * 19 18 17 45 45 H 0.97003 * 120.00081 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61418 * 89.15884 * 28 18 17 47 47 H 1.08994 * 113.61601 * 220.06025 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6179 0.0011 7 6 2.7273 4.2082 1.1734 8 6 3.6357 5.2643 1.1907 9 6 4.1773 5.7439 0.0377 10 6 3.8232 5.1645 -1.1930 11 7 4.3392 5.6140 -2.3415 12 6 4.0118 5.0775 -3.4918 13 6 3.1138 4.0154 -3.5765 14 6 2.5497 3.5076 -2.4411 15 6 2.9036 4.0864 -1.2075 16 6 2.1976 -1.2686 -0.0006 17 6 3.0563 -1.4846 1.2567 18 6 1.8187 -2.1382 1.8939 19 7 0.9480 -1.1894 2.5923 20 6 0.0697 -1.6376 3.5425 21 1 0.0595 -2.6816 3.8189 22 6 -0.8075 -0.7501 4.1506 23 7 -1.5970 -1.1644 5.1187 24 14 -0.8674 1.0323 3.5948 25 1 -1.7641 1.1539 2.4173 26 1 -1.3844 1.8785 4.7002 27 1 0.4988 1.4817 3.2248 28 6 1.3516 -2.4673 0.4662 29 1 -0.3633 0.0159 1.0275 30 1 -0.3633 0.8819 -0.5276 31 1 -0.3632 -0.8979 -0.4999 32 1 0.7582 2.5303 -0.8891 33 1 0.7590 2.5298 0.8909 34 1 2.3090 3.8498 2.1023 35 1 3.9108 5.7131 2.1337 36 1 4.8762 6.5666 0.0683 37 1 4.4499 5.4690 -4.3980 38 1 2.8635 3.5947 -4.5392 39 1 1.8521 2.6845 -2.4882 40 1 2.7344 -1.4483 -0.9321 41 1 3.3596 -0.5575 1.7430 42 1 3.8858 -2.1754 1.1056 43 1 2.0497 -3.0199 2.4918 44 1 0.9936 -0.2437 2.3815 45 1 -2.2102 -0.5443 5.5434 46 1 1.7142 -3.4272 0.0985 47 1 0.2807 -2.3322 0.3152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999109889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:18 Heat of formation + Delta-G solvation = 75.414192 kcal Electronic energy + Delta-G solvation = -30049.769627 eV Core-core repulsion = 26199.272061 eV Total energy + Delta-G solvation = -3850.497567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16260 -40.25673 -38.15769 -37.10625 -34.46668 -34.19825 -33.27957 -31.40205 -30.66041 -30.59391 -27.91771 -27.06670 -25.12023 -24.44502 -24.20386 -23.72226 -22.73043 -21.23511 -19.63786 -18.33072 -18.26315 -17.70887 -17.26266 -17.08072 -16.70644 -16.09895 -15.59258 -15.00463 -14.77512 -14.54916 -14.42095 -14.33382 -14.00564 -13.77451 -13.35308 -13.31243 -13.08966 -12.97916 -12.76342 -12.51719 -12.11005 -12.02007 -11.78819 -11.76280 -11.69187 -11.42323 -11.33029 -11.10119 -10.88173 -10.62394 -10.38622 -10.28099 -9.91107 -9.69061 -9.65526 -9.48674 -9.03838 -8.87537 -8.33566 -8.27792 -7.38105 -5.89637 -3.24876 0.25724 0.72064 1.85809 2.72608 2.78750 3.14908 3.16818 3.19073 3.30173 3.99101 4.14692 4.30859 4.42667 4.57459 4.59962 4.63467 4.68347 4.88791 4.97114 5.02485 5.04468 5.10253 5.16983 5.24264 5.25938 5.32503 5.35293 5.39954 5.57041 5.65092 5.69096 5.72705 5.83174 5.85971 5.94577 6.04662 6.07187 6.15944 6.26286 6.30401 6.34588 6.42528 6.47757 6.56283 6.71163 6.73696 6.91157 7.52524 7.76087 7.90254 8.30684 8.31855 9.08836 9.80575 10.01956 11.28811 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.003814 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.379488 B = 7339.575519 C = 8355.381644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.515 3.485 4 O -0.528 6.528 5 C -0.113 4.113 6 C -0.037 4.037 7 C -0.105 4.105 8 C -0.092 4.092 9 C -0.099 4.099 10 C 0.127 3.873 11 N -0.475 5.475 12 C 0.127 3.873 13 C -0.179 4.179 14 C -0.052 4.052 15 C -0.083 4.083 16 C 0.127 3.873 17 C -0.161 4.161 18 C 0.171 3.829 19 N -0.728 5.728 20 C -0.244 4.244 21 H 0.093 0.907 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.868 3.132 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.279 1.279 28 C -0.180 4.180 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.363 0.637 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 9.612 -16.800 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.325 5.325 3 C 0.303 3.697 4 O -0.405 6.405 5 C -0.152 4.152 6 C -0.038 4.038 7 C -0.123 4.123 8 C -0.112 4.112 9 C -0.117 4.117 10 C 0.006 3.994 11 N -0.183 5.183 12 C -0.046 4.046 13 C -0.199 4.199 14 C -0.078 4.078 15 C -0.085 4.085 16 C 0.024 3.976 17 C -0.201 4.201 18 C 0.060 3.940 19 N -0.369 5.369 20 C -0.374 4.374 21 H 0.111 0.889 22 C -0.188 4.188 23 N -0.576 5.576 24 Si 0.698 3.302 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.206 1.206 28 C -0.221 4.221 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.806 10.184 -16.445 20.859 hybrid contribution -0.893 0.477 -0.341 1.068 sum 6.913 10.661 -16.786 21.053 Atomic orbital electron populations 1.22132 0.79243 1.02592 1.03876 1.47543 1.06950 1.05155 1.72820 1.20248 0.88010 0.84590 0.76896 1.90708 1.13477 1.87205 1.49077 1.20846 0.97830 0.90989 1.05574 1.19064 0.96957 0.95235 0.92533 1.20875 0.97549 0.96034 0.97831 1.20881 0.95885 0.95960 0.98428 1.20755 1.00429 1.00379 0.90163 1.18815 0.94316 0.93523 0.92748 1.68025 1.23586 1.28703 0.97984 1.22907 0.93550 0.92335 0.95825 1.21839 0.99601 0.98905 0.99527 1.21452 0.97315 0.97431 0.91612 1.18580 0.98650 0.97324 0.93920 1.21870 0.94518 0.83380 0.97847 1.23702 0.97811 1.01878 0.96670 1.21097 0.89302 0.93133 0.90505 1.42621 1.44428 1.04620 1.45264 1.19134 1.09916 0.96307 1.12066 0.88921 1.24650 0.98683 0.97042 0.98407 1.69672 1.26899 1.34606 1.26454 0.86877 0.77436 0.87330 0.78512 1.20377 1.21494 1.20557 1.24208 1.00696 0.95801 1.01415 0.90586 0.91862 0.90095 0.87816 0.87570 0.85375 0.85041 0.84773 0.82545 0.84645 0.84909 0.90890 0.90884 0.89426 0.91225 0.80305 0.92890 0.89691 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 8.66 59.85 0.52 1.44 16 2 N -0.59 -9.19 2.09 -172.90 -0.36 -9.56 16 3 C 0.52 8.36 7.36 -10.99 -0.08 8.28 16 4 O -0.53 -10.13 14.99 5.55 0.08 -10.04 16 5 C -0.11 -1.53 3.81 -29.03 -0.11 -1.64 16 6 C -0.04 -0.52 4.38 -104.55 -0.46 -0.98 16 7 C -0.10 -1.43 9.58 -39.92 -0.38 -1.82 16 8 C -0.09 -1.10 9.94 -39.95 -0.40 -1.50 16 9 C -0.10 -1.24 9.98 -39.47 -0.39 -1.63 16 10 C 0.13 1.79 6.60 -84.86 -0.56 1.23 16 11 N -0.48 -6.35 10.34 -10.98 -0.11 -6.47 16 12 C 0.13 1.33 11.15 -17.46 -0.19 1.14 16 13 C -0.18 -1.77 10.03 -39.77 -0.40 -2.17 16 14 C -0.05 -0.61 9.36 -39.22 -0.37 -0.98 16 15 C -0.08 -1.15 5.74 -106.80 -0.61 -1.77 16 16 C 0.13 1.96 4.14 -67.03 -0.28 1.68 16 17 C -0.16 -2.72 7.12 -25.92 -0.18 -2.90 16 18 C 0.17 3.19 4.54 -67.12 -0.30 2.88 16 19 N -0.73 -16.36 3.85 -52.64 -0.20 -16.57 16 20 C -0.24 -6.54 10.46 -15.06 -0.16 -6.70 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 24 Si 0.87 20.46 25.79 -169.99 -4.38 16.08 16 25 H -0.28 -6.08 7.01 56.52 0.40 -5.68 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.27 6.57 56.52 0.37 -5.90 16 28 C -0.18 -2.75 7.16 -25.83 -0.19 -2.93 16 29 H 0.08 1.35 4.00 -51.93 -0.21 1.14 16 30 H 0.06 0.71 6.48 -51.93 -0.34 0.37 16 31 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16 32 H 0.10 1.09 5.99 -51.93 -0.31 0.78 16 33 H 0.11 1.45 8.00 -51.92 -0.42 1.03 16 34 H 0.13 1.69 8.05 -52.49 -0.42 1.26 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.36 6.57 -52.49 -0.34 1.01 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.43 7.17 -51.93 -0.37 1.06 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.32 8.12 -51.93 -0.42 0.89 16 44 H 0.36 8.11 3.78 -40.82 -0.15 7.95 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.28 5.85 -51.93 -0.30 0.97 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -33.51 370.68 -9.44 -42.95 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.18 Total: 13.49 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -4.64 Total: -8.21 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.10 Total: -59.85 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.38 Total: 16.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.51 -9.44 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999109889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.363 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds