Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 120.00015 * 2 1 4 4 O 1.21636 * 119.99805 * 185.38688 * 3 2 1 5 5 C 1.47131 * 119.99976 * 5.39128 * 3 2 1 6 6 C 1.36617 * 126.97777 * 35.03010 * 5 3 2 7 7 N 1.34699 * 108.68742 * 179.97438 * 6 5 3 8 8 H 0.96999 * 124.73101 * 180.02562 * 7 6 5 9 9 C 1.36223 * 110.54572 * 0.02562 * 7 6 5 10 10 C 1.35745 * 108.67615 * 359.75017 * 9 7 6 11 11 C 1.48288 * 126.97829 * 180.22430 * 10 9 7 12 12 C 1.39396 * 120.12449 * 129.90228 * 11 10 9 13 13 C 1.38002 * 119.86889 * 179.72184 * 12 11 10 14 14 C 1.38329 * 120.12937 * 0.53224 * 13 12 11 15 15 C 1.38333 * 120.25188 * 359.76270 * 14 13 12 16 16 C 1.38004 * 120.12910 * 359.95796 * 15 14 13 17 17 C 1.46495 * 120.00051 * 179.97438 * 2 1 3 18 18 C 1.53778 * 113.69178 * 17.02342 * 17 2 1 19 19 C 1.53785 * 87.08172 * 89.12618 * 18 17 2 20 20 N 1.46497 * 113.61173 * 270.88286 * 19 18 17 21 21 C 1.36935 * 120.00410 * 257.42042 * 20 19 18 22 22 H 1.08001 * 119.99753 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00385 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99807 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47411 * 90.00414 * 25 23 21 27 27 H 1.48508 * 109.46980 * 210.00155 * 25 23 21 28 28 H 1.48500 * 109.47602 * 329.99923 * 25 23 21 29 29 C 1.53780 * 113.61501 * 114.55899 * 17 2 1 30 30 H 1.08999 * 109.47090 * 265.20016 * 1 2 3 31 31 H 1.08997 * 109.46699 * 25.20020 * 1 2 3 32 32 H 1.08993 * 109.46727 * 145.19581 * 1 2 3 33 33 H 1.08003 * 125.65397 * 359.95073 * 6 5 3 34 34 H 1.08004 * 125.66079 * 179.97438 * 9 7 6 35 35 H 1.07998 * 120.06330 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.93547 * 180.29731 * 13 12 11 37 37 H 1.07994 * 119.87708 * 179.74340 * 14 13 12 38 38 H 1.08002 * 119.93467 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.06594 * 180.02562 * 16 15 14 40 40 H 1.08999 * 112.84983 * 245.75526 * 17 2 1 41 41 H 1.09003 * 113.61785 * 203.67312 * 18 17 2 42 42 H 1.09000 * 113.61365 * 334.57930 * 18 17 2 43 43 H 1.09004 * 113.68962 * 139.99727 * 19 18 17 44 44 H 0.97007 * 119.99760 * 77.42956 * 20 19 18 45 45 H 0.96994 * 120.00346 * 180.02562 * 24 23 21 46 46 H 1.09003 * 113.61523 * 25.35023 * 29 17 2 47 47 H 1.08997 * 113.61610 * 156.25316 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1695 -0.0989 5 6 1.4082 2.4386 0.1197 6 6 0.2787 2.6714 0.8523 7 7 -0.0768 3.9616 0.6989 8 1 -0.8470 4.3761 1.1182 9 6 0.7960 4.6031 -0.1271 10 6 1.7490 3.7208 -0.5222 11 6 2.8979 3.9914 -1.4198 12 6 4.1854 3.6145 -1.0412 13 6 5.2500 3.8637 -1.8832 14 6 5.0429 4.4960 -3.0959 15 6 3.7683 4.8778 -3.4741 16 6 2.6952 4.6287 -2.6428 17 6 2.1975 -1.2687 0.0006 18 6 1.3404 -2.4772 -0.4112 19 6 1.7549 -2.1775 -1.8614 20 7 0.8581 -1.2437 -2.5469 21 6 -0.0601 -1.7127 -3.4480 22 1 -0.1235 -2.7711 -3.6531 23 6 -0.9095 -0.8278 -4.0979 24 7 -0.8320 0.4622 -3.8484 25 14 -2.1625 -1.4678 -5.3266 26 1 -3.4318 -1.7802 -4.6221 27 1 -2.4130 -0.4335 -6.3624 28 1 -1.6389 -2.6982 -5.9724 29 6 3.0127 -1.5099 -1.2809 30 1 -0.3633 -0.0860 1.0240 31 1 -0.3632 0.9298 -0.4376 32 1 -0.3632 -0.8438 -0.5865 33 1 -0.2428 1.9419 1.4541 34 1 0.7412 5.6422 -0.4164 35 1 4.3489 3.1247 -0.0926 36 1 6.2473 3.5678 -1.5931 37 1 5.8796 4.6928 -3.7499 38 1 3.6125 5.3716 -4.4219 39 1 1.7004 4.9268 -2.9393 40 1 2.7663 -1.4286 0.9165 41 1 1.7185 -3.4286 -0.0368 42 1 0.2752 -2.3409 -0.2244 43 1 1.9664 -3.0703 -2.4499 44 1 0.9148 -0.2930 -2.3626 45 1 -1.4257 1.0805 -4.3023 46 1 3.2976 -0.5927 -1.7963 47 1 3.8479 -2.1968 -1.1442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999833415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = 93.365360 kcal Electronic energy + Delta-G solvation = -30373.320466 eV Core-core repulsion = 26523.601321 eV Total energy + Delta-G solvation = -3849.719146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08237 -39.63066 -38.41426 -37.26249 -34.01447 -33.08963 -32.23252 -30.51685 -30.08797 -29.47809 -28.12569 -26.66606 -24.90001 -24.24396 -23.25714 -22.61632 -22.14253 -21.32400 -19.75234 -18.83010 -18.30057 -17.47182 -17.21388 -16.21289 -15.89760 -15.47476 -15.20801 -14.74428 -14.62384 -14.46658 -14.12537 -13.69833 -13.57802 -13.40550 -13.05986 -12.96857 -12.91381 -12.66841 -12.54724 -12.29336 -11.96550 -11.78755 -11.53295 -11.20227 -11.04640 -10.84636 -10.82898 -10.71442 -10.61366 -10.19800 -9.98988 -9.71133 -9.53251 -9.13881 -8.99881 -8.82998 -8.47350 -8.22324 -7.91592 -7.72015 -6.92012 -5.74784 -3.03871 1.55784 1.86648 2.15441 2.74007 3.30544 3.41788 3.48374 3.49491 3.51572 3.95125 4.24853 4.58959 4.98849 5.04190 5.18930 5.23146 5.33235 5.34596 5.35346 5.50099 5.53595 5.59242 5.62959 5.84645 5.87572 5.90496 5.92954 5.99086 6.01818 6.07558 6.14102 6.26296 6.39550 6.45196 6.49553 6.50347 6.69871 6.76355 6.80365 6.88394 6.90925 6.93152 7.02345 7.06501 7.13315 7.34378 7.43008 7.56499 7.73417 8.05952 8.43314 8.87000 9.54721 10.14499 10.51029 11.46063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.004551 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.799812 B = 6151.429896 C = 6681.570335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.583 5.583 3 C 0.590 3.410 4 O -0.542 6.542 5 C -0.194 4.194 6 C 0.039 3.961 7 N -0.549 5.549 8 H 0.416 0.584 9 C -0.008 4.008 10 C -0.077 4.077 11 C -0.013 4.013 12 C -0.076 4.076 13 C -0.128 4.128 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.105 4.105 17 C 0.133 3.867 18 C -0.184 4.184 19 C 0.164 3.836 20 N -0.703 5.703 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.924 5.924 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 C -0.161 4.161 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.390 0.610 45 H 0.254 0.746 46 H 0.075 0.925 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 8.055 11.001 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.315 5.315 3 C 0.380 3.620 4 O -0.420 6.420 5 C -0.204 4.204 6 C -0.095 4.095 7 N -0.142 5.142 8 H 0.252 0.748 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.013 4.013 12 C -0.094 4.094 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.123 4.123 17 C 0.029 3.971 18 C -0.226 4.226 19 C 0.052 3.948 20 N -0.344 5.344 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.572 5.572 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.200 4.200 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.190 0.810 34 H 0.186 0.814 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.226 0.774 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.992 8.040 10.841 14.075 hybrid contribution -1.298 0.039 -0.553 1.412 sum 2.694 8.079 10.288 13.356 Atomic orbital electron populations 1.22177 0.79231 1.06363 0.99683 1.47272 1.06964 1.04563 1.72695 1.17328 0.86506 0.82307 0.75886 1.90688 1.13735 1.87117 1.50470 1.20302 0.99296 0.94041 1.06808 1.21949 0.97485 0.86282 1.03817 1.41332 1.24410 1.09468 1.39014 0.74788 1.21688 0.93238 0.98462 1.00311 1.19021 0.96386 0.91653 1.01359 1.18078 0.91607 0.98359 0.93288 1.21417 0.91309 0.96221 1.00426 1.21029 0.98875 0.99920 0.94809 1.21096 0.96873 0.99642 0.96756 1.20950 0.92835 1.01522 0.99406 1.21180 0.98743 0.98882 0.93475 1.21672 0.94359 0.83657 0.97384 1.24225 1.00447 0.95641 1.02239 1.21156 0.89796 0.93442 0.90432 1.42328 1.38903 1.05785 1.47340 1.19269 1.09952 0.92608 1.15550 0.91210 1.24719 1.00094 0.95349 1.00441 1.69688 1.40862 1.00744 1.45881 0.86250 0.81583 0.77565 0.81113 1.21858 1.21911 1.20846 1.23680 0.97623 1.01729 0.97006 0.94754 0.90114 0.88048 0.81029 0.81401 0.84919 0.86593 0.86805 0.86531 0.86318 0.91444 0.90324 0.90408 0.92352 0.77415 0.93652 0.90594 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 7.34 59.85 0.44 1.62 16 2 N -0.58 -10.70 2.15 -174.39 -0.38 -11.08 16 3 C 0.59 11.55 7.32 -12.65 -0.09 11.46 16 4 O -0.54 -11.63 12.82 5.25 0.07 -11.56 16 5 C -0.19 -3.36 5.43 -103.15 -0.56 -3.92 16 6 C 0.04 0.52 9.65 -16.88 -0.16 0.36 16 7 N -0.55 -5.93 5.88 -12.64 -0.07 -6.00 16 8 H 0.42 2.81 8.96 -40.82 -0.37 2.44 16 9 C -0.01 -0.10 11.80 -16.49 -0.19 -0.30 16 10 C -0.08 -1.29 5.79 -102.93 -0.60 -1.89 16 11 C -0.01 -0.22 5.71 -104.90 -0.60 -0.82 16 12 C -0.08 -1.31 8.31 -39.24 -0.33 -1.64 16 13 C -0.13 -1.99 10.03 -39.63 -0.40 -2.39 16 14 C -0.13 -1.82 10.04 -39.51 -0.40 -2.22 16 15 C -0.13 -1.93 10.03 -39.63 -0.40 -2.33 16 16 C -0.10 -1.70 9.72 -39.24 -0.38 -2.08 16 17 C 0.13 2.36 4.14 -67.12 -0.28 2.08 16 18 C -0.18 -3.16 7.16 -25.92 -0.19 -3.34 16 19 C 0.16 3.39 4.55 -67.12 -0.31 3.08 16 20 N -0.70 -17.54 3.74 -52.64 -0.20 -17.74 16 21 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -26.99 13.06 55.49 0.72 -26.27 16 25 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C -0.16 -3.08 7.12 -25.92 -0.18 -3.27 16 30 H 0.03 0.47 7.54 -51.93 -0.39 0.08 16 31 H 0.08 1.50 5.79 -51.93 -0.30 1.20 16 32 H 0.10 2.03 4.60 -51.93 -0.24 1.79 16 33 H 0.17 1.86 6.57 -52.48 -0.35 1.51 16 34 H 0.17 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.13 2.42 6.51 -52.49 -0.34 2.08 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.39 5.80 -51.93 -0.30 1.09 16 43 H 0.06 1.20 8.13 -51.93 -0.42 0.77 16 44 H 0.39 10.46 6.10 -40.82 -0.25 10.21 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.08 1.72 7.20 -51.93 -0.37 1.35 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.38 376.20 -10.33 -43.71 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -6.26 Total: 18.98 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -4.86 Total: -12.71 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.08 Total: -61.09 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.38 -10.33 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999833415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.073 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds