Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00187 * 2 1 4 4 O 1.21717 * 120.00380 * 186.48478 * 3 2 1 5 5 C 1.46584 * 119.99889 * 6.48377 * 3 2 1 6 6 C 1.38054 * 126.00847 * 187.57352 * 5 3 2 7 7 C 1.39363 * 107.43956 * 179.84264 * 6 5 3 8 8 C 1.37814 * 107.65743 * 0.41655 * 7 6 5 9 9 C 1.47805 * 125.82640 * 179.74054 * 8 7 6 10 10 C 1.39594 * 120.14955 * 179.72620 * 9 8 7 11 11 C 1.37953 * 119.85390 * 179.67646 * 10 9 8 12 12 C 1.38362 * 120.14274 * 0.62146 * 11 10 9 13 13 C 1.38364 * 120.29665 * 359.67863 * 12 11 10 14 14 C 1.37951 * 120.14829 * 359.97438 * 13 12 11 15 15 N 1.36410 * 108.35306 * 359.74049 * 8 7 6 16 16 H 0.96996 * 125.72230 * 179.97438 * 15 8 7 17 17 C 1.46504 * 119.99826 * 180.02562 * 2 1 3 18 18 C 1.53781 * 113.69352 * 17.11015 * 17 2 1 19 19 C 1.53779 * 87.07729 * 89.13062 * 18 17 2 20 20 N 1.46500 * 113.61553 * 270.88339 * 19 18 17 21 21 C 1.36939 * 119.99741 * 257.86736 * 20 19 18 22 22 H 1.08000 * 120.00371 * 6.12748 * 21 20 19 23 23 C 1.38820 * 119.99857 * 186.13127 * 21 20 19 24 24 N 1.31614 * 119.99957 * 175.70169 * 23 21 20 25 25 Si 1.86801 * 119.99890 * 355.69723 * 23 21 20 26 26 H 1.48499 * 109.47317 * 95.03252 * 25 23 21 27 27 H 1.48498 * 109.47347 * 215.03910 * 25 23 21 28 28 H 1.48511 * 109.46886 * 335.03520 * 25 23 21 29 29 C 1.53772 * 113.61855 * 114.64945 * 17 2 1 30 30 H 1.09000 * 109.47243 * 275.49676 * 1 2 3 31 31 H 1.09000 * 109.47142 * 35.50004 * 1 2 3 32 32 H 1.09006 * 109.47075 * 155.50070 * 1 2 3 33 33 H 1.07998 * 126.27558 * 0.02562 * 6 5 3 34 34 H 1.08002 * 126.16946 * 180.15892 * 7 6 5 35 35 H 1.07998 * 120.07295 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.93045 * 180.31594 * 11 10 9 37 37 H 1.08004 * 119.84842 * 179.69443 * 12 11 10 38 38 H 1.08004 * 119.92635 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.07449 * 180.02562 * 14 13 12 40 40 H 1.09007 * 112.84699 * 245.84786 * 17 2 1 41 41 H 1.09001 * 113.61497 * 203.68110 * 18 17 2 42 42 H 1.09000 * 113.61513 * 334.58204 * 18 17 2 43 43 H 1.09001 * 113.69040 * 139.99246 * 19 18 17 44 44 H 0.96999 * 120.00146 * 77.86099 * 20 19 18 45 45 H 0.97005 * 119.99425 * 180.02562 * 24 23 21 46 46 H 1.09010 * 113.61192 * 25.34540 * 29 17 2 47 47 H 1.08999 * 113.62130 * 156.24447 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3502 1.1705 -0.1190 5 6 1.4130 2.4325 0.1434 6 6 1.9524 3.6968 0.0140 7 6 0.9234 4.6132 0.2226 8 6 -0.2256 3.8990 0.4852 9 6 -1.5563 4.4754 0.7709 10 6 -2.6454 3.6374 1.0160 11 6 -3.8833 4.1820 1.2887 12 6 -4.0493 5.5555 1.3067 13 6 -2.9753 6.3918 1.0584 14 6 -1.7306 5.8603 0.7915 15 7 0.0747 2.5692 0.4365 16 1 -0.5498 1.8419 0.5841 17 6 2.1975 -1.2688 -0.0006 18 6 1.3409 -2.4767 -0.4154 19 6 1.7574 -2.1745 -1.8646 20 7 0.8617 -1.2395 -2.5499 21 6 -0.0614 -1.7081 -3.4463 22 1 -0.1974 -2.7717 -3.5752 23 6 -0.8223 -0.8160 -4.1894 24 7 -1.6485 -1.2641 -5.1107 25 14 -0.6738 1.0205 -3.8814 26 1 0.3003 1.6055 -4.8376 27 1 -1.9993 1.6628 -4.0698 28 1 -0.2041 1.2530 -2.4919 29 6 3.0144 -1.5080 -1.2812 30 1 -0.3634 0.0984 1.0229 31 1 -0.3633 0.8366 -0.5968 32 1 -0.3633 -0.9352 -0.4262 33 1 2.9821 3.9322 -0.2108 34 1 1.0115 5.6891 0.1890 35 1 -2.5183 2.5651 0.9971 36 1 -4.7257 3.5348 1.4836 37 1 -5.0216 5.9767 1.5158 38 1 -3.1116 7.4631 1.0744 39 1 -0.8931 6.5142 0.5983 40 1 2.7651 -1.4302 0.9160 41 1 1.7184 -3.4286 -0.0420 42 1 0.2754 -2.3407 -0.2299 43 1 1.9699 -3.0663 -2.4542 44 1 0.9224 -0.2886 -2.3686 45 1 -2.1799 -0.6406 -5.6302 46 1 3.3001 -0.5898 -1.7948 47 1 3.8495 -2.1950 -1.1446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999917101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 105.429252 kcal Electronic energy + Delta-G solvation = -29902.146080 eV Core-core repulsion = 26052.950064 eV Total energy + Delta-G solvation = -3849.196016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59472 -40.04320 -38.93653 -37.66139 -34.65001 -33.34148 -32.16124 -31.64055 -30.81009 -30.52457 -28.26665 -27.35339 -25.24235 -24.67155 -23.53518 -22.97957 -22.47435 -20.99669 -20.69290 -19.71559 -18.74325 -17.92612 -17.53681 -16.74700 -16.36524 -15.90733 -15.68863 -15.10872 -14.83837 -14.76230 -14.50377 -14.15391 -13.91829 -13.79563 -13.61417 -13.45948 -13.16745 -12.85886 -12.73590 -12.71042 -12.55449 -12.28673 -12.10309 -11.68726 -11.54107 -11.44970 -11.23892 -11.03229 -10.91648 -10.33942 -10.19464 -10.04136 -9.71851 -9.65994 -9.55815 -9.22154 -9.07184 -8.99356 -8.44966 -7.71356 -7.36591 -5.89369 -3.25212 0.62457 1.14537 1.73532 2.71434 2.87920 3.11595 3.21446 3.31093 3.39150 3.49452 3.68897 4.42954 4.46291 4.51203 4.59157 4.69411 4.86071 4.95493 5.00651 5.09556 5.14208 5.20061 5.22120 5.24840 5.26668 5.32482 5.37835 5.61252 5.63781 5.65421 5.74610 5.87046 5.94778 6.01307 6.03962 6.07918 6.19482 6.21975 6.24989 6.33612 6.45171 6.54971 6.68184 6.68973 6.71994 6.83097 6.94034 7.25440 7.47727 7.91886 8.26428 8.31494 9.10188 9.82468 10.03539 11.28307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.004286 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.346610 B = 6530.749922 C = 7923.354658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.588 5.588 3 C 0.587 3.413 4 O -0.526 6.526 5 C -0.032 4.032 6 C -0.110 4.110 7 C -0.183 4.183 8 C 0.070 3.930 9 C -0.016 4.016 10 C -0.122 4.122 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.100 4.100 15 N -0.533 5.533 16 H 0.421 0.579 17 C 0.126 3.874 18 C -0.182 4.182 19 C 0.170 3.830 20 N -0.730 5.730 21 C -0.249 4.249 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.927 5.927 25 Si 0.878 3.122 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.161 4.161 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.364 0.636 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 10.886 16.522 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.321 5.321 3 C 0.376 3.624 4 O -0.402 6.402 5 C -0.147 4.147 6 C -0.137 4.137 7 C -0.207 4.207 8 C -0.046 4.046 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.128 4.128 12 C -0.141 4.141 13 C -0.132 4.132 14 C -0.119 4.119 15 N -0.136 5.136 16 H 0.267 0.733 17 C 0.023 3.977 18 C -0.223 4.223 19 C 0.058 3.942 20 N -0.372 5.372 21 C -0.379 4.379 22 H 0.111 0.889 23 C -0.186 4.186 24 N -0.574 5.574 25 Si 0.709 3.291 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.201 4.201 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.198 0.802 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.657 10.526 16.270 19.389 hybrid contribution -0.494 1.009 0.163 1.136 sum -1.152 11.535 16.433 20.111 Atomic orbital electron populations 1.22519 0.80461 1.06990 1.00084 1.47358 1.06422 1.05385 1.72889 1.17057 0.86664 0.81702 0.76994 1.90814 1.12788 1.86472 1.50172 1.20516 0.83332 0.95617 1.15205 1.21178 0.99798 0.89628 1.03049 1.21054 0.91101 0.99208 1.09384 1.19195 0.94135 0.83139 1.08164 1.18112 0.89859 0.93512 1.00173 1.21144 0.92886 0.99205 1.00787 1.21056 0.96920 0.95416 0.99439 1.21241 0.99014 0.93569 1.00249 1.21092 0.92584 0.99988 0.99518 1.21113 0.97866 0.93362 0.99587 1.43165 1.09366 1.07491 1.53532 0.73348 1.21869 0.94614 0.82978 0.98195 1.24241 1.00350 0.95850 1.01834 1.21117 0.89060 0.93520 0.90514 1.42661 1.40312 1.04547 1.49633 1.19103 1.11597 0.94385 1.12775 0.88947 1.24659 0.99337 0.97018 0.97565 1.69704 1.29515 1.33570 1.24628 0.86723 0.77101 0.87386 0.77926 1.21071 1.21640 1.20343 1.23721 0.97939 1.01957 0.96473 0.93357 0.90745 0.86418 0.83167 0.83671 0.86632 0.85618 0.85872 0.85578 0.85229 0.90540 0.89409 0.90228 0.91089 0.80180 0.92957 0.90619 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 7.09 59.85 0.42 1.06 16 2 N -0.59 -9.74 2.15 -174.57 -0.38 -10.12 16 3 C 0.59 10.61 7.41 -12.90 -0.10 10.51 16 4 O -0.53 -10.62 15.74 5.17 0.08 -10.54 16 5 C -0.03 -0.53 6.62 -81.94 -0.54 -1.08 16 6 C -0.11 -1.67 10.61 -39.23 -0.42 -2.09 16 7 C -0.18 -2.42 10.22 -39.32 -0.40 -2.82 16 8 C 0.07 0.96 6.93 -82.07 -0.57 0.39 16 9 C -0.02 -0.19 5.87 -104.97 -0.62 -0.81 16 10 C -0.12 -1.37 9.70 -39.18 -0.38 -1.75 16 11 C -0.11 -1.07 10.03 -39.64 -0.40 -1.46 16 12 C -0.12 -1.07 10.04 -39.49 -0.40 -1.47 16 13 C -0.11 -1.00 10.03 -39.64 -0.40 -1.40 16 14 C -0.10 -1.02 9.56 -39.18 -0.37 -1.40 16 15 N -0.53 -7.69 4.96 -5.81 -0.03 -7.72 16 16 H 0.42 5.43 3.99 -40.82 -0.16 5.26 16 17 C 0.13 1.99 4.15 -67.12 -0.28 1.71 16 18 C -0.18 -2.76 7.16 -25.92 -0.19 -2.94 16 19 C 0.17 3.17 4.55 -67.12 -0.31 2.87 16 20 N -0.73 -16.63 3.77 -52.64 -0.20 -16.83 16 21 C -0.25 -6.72 10.46 -15.06 -0.16 -6.87 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -28.36 13.97 55.49 0.78 -27.58 16 25 Si 0.88 21.99 27.84 -169.99 -4.73 17.26 16 26 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.38 4.67 56.52 0.26 -6.12 16 29 C -0.16 -2.74 7.11 -25.93 -0.18 -2.92 16 30 H 0.05 0.56 7.43 -51.93 -0.39 0.17 16 31 H 0.07 1.23 3.98 -51.93 -0.21 1.02 16 32 H 0.12 1.93 4.56 -51.93 -0.24 1.69 16 33 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.15 1.49 7.26 -52.49 -0.38 1.11 16 35 H 0.12 1.18 7.14 -52.49 -0.37 0.80 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 1.08 6.98 -52.49 -0.37 0.72 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.25 5.59 -51.93 -0.29 0.96 16 43 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 44 H 0.36 8.41 3.94 -40.82 -0.16 8.25 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.08 1.50 7.16 -51.92 -0.37 1.13 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -33.26 369.55 -10.29 -43.55 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -6.01 Total: 16.67 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -5.37 Total: -10.25 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.17 Total: -62.25 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.73 Total: 17.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.26 -10.29 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999917101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.980 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds