Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36564 * 125.06736 * 2 1 4 4 C 1.34459 * 109.97085 * 179.97438 * 3 2 1 5 5 C 1.46248 * 107.03655 * 0.02562 * 4 3 2 6 6 C 1.39922 * 133.83634 * 179.97438 * 5 4 3 7 7 C 1.36201 * 119.95650 * 179.76055 * 6 5 4 8 8 C 1.40243 * 120.37815 * 0.51408 * 7 6 5 9 9 C 1.47577 * 119.83068 * 179.75757 * 8 7 6 10 10 O 1.21586 * 120.00230 * 179.72691 * 9 8 7 11 11 N 1.34778 * 119.99962 * 359.72483 * 9 8 7 12 12 C 1.46494 * 120.00050 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47477 * 179.97438 * 12 11 9 14 14 C 1.29451 * 117.69288 * 94.99671 * 13 12 11 15 15 C 1.50319 * 123.65529 * 181.13868 * 14 13 12 16 16 N 1.47132 * 109.10018 * 348.55136 * 15 14 13 17 17 C 1.36940 * 121.53393 * 223.15538 * 16 15 14 18 18 H 1.07991 * 120.00464 * 156.23153 * 17 16 15 19 19 C 1.38816 * 119.99712 * 336.23276 * 17 16 15 20 20 N 1.31620 * 119.99998 * 344.47735 * 19 17 16 21 21 Si 1.86801 * 119.99831 * 164.47736 * 19 17 16 22 22 H 1.48492 * 109.47175 * 90.00094 * 21 19 17 23 23 H 1.48504 * 109.46897 * 209.99863 * 21 19 17 24 24 H 1.48499 * 109.47160 * 329.99876 * 21 19 17 25 25 C 1.47337 * 117.09112 * 43.37218 * 16 15 14 26 26 C 1.49968 * 117.69436 * 275.02765 * 13 12 11 27 27 C 1.39282 * 120.33543 * 359.47947 * 8 7 6 28 28 C 1.37820 * 125.07050 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47454 * 270.00292 * 1 2 3 30 30 H 1.08995 * 109.47493 * 30.00130 * 1 2 3 31 31 H 1.08999 * 109.47471 * 150.00728 * 1 2 3 32 32 H 1.07993 * 125.01606 * 359.97350 * 3 2 1 33 33 H 1.08007 * 126.47944 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.01594 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.80547 * 180.25042 * 7 6 5 36 36 H 0.97004 * 119.99771 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.46828 * 60.00377 * 12 11 9 38 38 H 1.08996 * 109.47550 * 300.00145 * 12 11 9 39 39 H 1.08004 * 118.17123 * 0.87021 * 14 13 12 40 40 H 1.09005 * 109.52227 * 108.64796 * 15 14 13 41 41 H 1.08988 * 109.52770 * 228.84266 * 15 14 13 42 42 H 0.97003 * 119.99843 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.78002 * 178.39736 * 25 16 15 44 44 H 1.09002 * 109.77673 * 57.59735 * 25 16 15 45 45 H 1.08996 * 109.31096 * 281.28435 * 26 13 12 46 46 H 1.08994 * 109.31663 * 40.71532 * 26 13 12 47 47 H 1.08000 * 120.16252 * 180.27562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1177 0.0000 4 6 3.5478 0.7676 0.0006 5 6 3.5973 -0.6941 0.0003 6 6 4.6388 -1.6285 0.0002 7 6 4.3570 -2.9610 0.0049 8 6 3.0266 -3.4046 -0.0010 9 6 2.7352 -4.8513 -0.0012 10 8 1.5829 -5.2393 -0.0012 11 7 3.7463 -5.7424 -0.0013 12 6 3.4570 -7.1785 -0.0010 13 6 4.7506 -7.9517 -0.0019 14 6 5.2167 -8.3459 1.1397 15 6 6.5057 -9.1032 1.2966 16 7 6.9703 -9.5425 -0.0285 17 6 7.4664 -10.8025 -0.2320 18 1 7.4421 -11.2395 -1.2193 19 6 8.0006 -11.5181 0.8308 20 7 8.3135 -10.8995 1.9496 21 14 8.2753 -13.3591 0.6730 22 1 9.6382 -13.6124 0.1408 23 1 8.1388 -13.9960 2.0076 24 1 7.2672 -13.9323 -0.2545 25 6 6.8835 -8.5654 -1.1279 26 6 5.4076 -8.2095 -1.3251 27 6 1.9790 -2.4867 -0.0008 28 6 2.2569 -1.1280 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.8817 2.1331 -0.0004 33 1 4.3939 1.4388 0.0003 34 1 5.6654 -1.2932 0.0007 35 1 5.1628 -3.6801 0.0089 36 1 4.6656 -5.4329 -0.0009 37 1 2.8813 -7.4334 -0.8908 38 1 2.8818 -7.4331 0.8892 39 1 4.6499 -8.1141 2.0293 40 1 7.2549 -8.4563 1.7531 41 1 6.3413 -9.9749 1.9297 42 1 8.6864 -11.3997 2.6924 43 1 7.2828 -9.0032 -2.0428 44 1 7.4479 -7.6692 -0.8702 45 1 4.9011 -9.0355 -1.8242 46 1 5.3319 -7.3164 -1.9453 47 1 0.9555 -2.8314 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001337340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 70.375334 kcal Electronic energy + Delta-G solvation = -27878.461339 eV Core-core repulsion = 24027.745271 eV Total energy + Delta-G solvation = -3850.716068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63607 -39.76123 -37.81945 -36.86924 -34.95163 -33.21247 -32.88752 -31.00816 -30.61432 -29.83702 -29.39440 -26.88302 -26.60537 -24.50466 -23.14938 -22.65257 -22.44262 -21.08868 -20.77473 -20.15258 -18.06051 -17.59545 -17.13128 -16.46960 -15.89514 -15.74576 -15.65093 -15.23482 -14.89174 -14.67209 -14.30147 -14.11161 -13.81831 -13.66114 -13.58312 -13.41518 -13.26725 -13.21827 -12.90061 -12.76599 -12.28481 -12.10756 -12.02555 -11.56102 -11.50541 -11.32840 -11.21318 -10.91743 -10.72575 -10.40388 -10.32270 -9.97249 -9.95419 -9.83131 -9.59252 -8.97065 -8.68468 -8.47968 -8.06125 -7.95051 -6.75463 -5.80451 -3.18861 0.57700 1.24826 2.27209 2.39724 2.62770 2.97196 3.37902 3.44933 3.47416 3.56076 3.80710 4.31596 4.39862 4.44489 4.49161 4.67481 4.74893 4.87630 5.01573 5.03888 5.12953 5.20826 5.30621 5.36181 5.39877 5.41069 5.58523 5.61346 5.75094 5.84195 5.95436 6.06839 6.13334 6.17917 6.26336 6.34347 6.39013 6.43635 6.48420 6.55754 6.73648 6.86374 6.86966 6.91047 7.16491 7.25790 7.32723 7.62234 7.72681 7.82082 8.26995 8.37194 9.18608 9.81479 10.39735 11.30083 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.001927 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.005026 B =14529.815412 C =14995.337661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.485 5.485 3 C 0.057 3.943 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.077 4.077 7 C -0.113 4.113 8 C -0.115 4.115 9 C 0.557 3.443 10 O -0.548 6.548 11 N -0.714 5.714 12 C 0.157 3.843 13 C -0.167 4.167 14 C -0.124 4.124 15 C 0.193 3.807 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.060 4.060 28 C 0.081 3.919 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 25.145 -3.538 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.069 4.069 4 C -0.234 4.234 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.133 4.133 8 C -0.120 4.120 9 C 0.345 3.655 10 O -0.428 6.428 11 N -0.365 5.365 12 C 0.035 3.965 13 C -0.167 4.167 14 C -0.144 4.144 15 C 0.068 3.932 16 N -0.318 5.318 17 C -0.374 4.374 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.017 3.983 26 C -0.129 4.129 27 C -0.082 4.082 28 C -0.024 4.024 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.238 0.762 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.747 24.750 -3.400 28.515 hybrid contribution 0.459 -0.716 0.103 0.856 sum -13.289 24.033 -3.297 27.660 Atomic orbital electron populations 1.21995 0.76931 1.04417 1.03249 1.43810 1.06039 1.04247 1.62730 1.21871 0.90563 0.91110 1.03352 1.21726 0.96035 0.92803 1.12835 1.19396 0.92023 0.93742 1.04140 1.20190 0.98210 0.91605 0.99574 1.20782 0.95176 0.96002 1.01332 1.19544 0.93499 0.92588 1.06337 1.18167 0.85157 0.85709 0.76491 1.90753 1.20530 1.80782 1.50696 1.46102 1.09416 1.06714 1.74246 1.20476 0.95916 0.78164 1.01940 1.20493 0.96795 1.03206 0.96254 1.23292 0.98821 0.96182 0.96127 1.19787 0.88029 0.97119 0.88237 1.44162 1.72477 1.10636 1.04541 1.19167 1.32795 0.89935 0.95523 0.91355 1.24989 0.98872 0.98726 0.97404 1.70004 1.46250 1.34267 1.04992 0.86258 0.77991 0.85398 0.76921 1.21446 1.21576 1.20540 1.20958 0.92174 0.92671 0.92524 1.20756 0.98781 0.99793 0.93602 1.20026 0.99699 0.88448 0.99997 1.18088 0.90286 0.88069 1.05995 0.91072 0.89771 0.89851 0.81330 0.83330 0.85277 0.85345 0.76232 0.91483 0.91550 0.88749 0.94053 0.88838 0.93604 0.92453 0.95909 0.91734 0.92831 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.02 59.85 0.66 1.03 16 2 N -0.49 -4.05 3.18 -121.85 -0.39 -4.43 16 3 C 0.06 0.40 11.28 -16.78 -0.19 0.21 16 4 C -0.21 -1.74 11.08 -37.70 -0.42 -2.16 16 5 C -0.09 -0.94 6.37 -105.05 -0.67 -1.61 16 6 C -0.08 -0.78 10.03 -39.68 -0.40 -1.18 16 7 C -0.11 -1.22 9.46 -39.56 -0.37 -1.60 16 8 C -0.12 -1.47 5.87 -104.95 -0.62 -2.08 16 9 C 0.56 8.26 7.76 -12.45 -0.10 8.16 16 10 O -0.55 -9.81 16.31 5.29 0.09 -9.73 16 11 N -0.71 -9.83 5.50 -62.52 -0.34 -10.18 16 12 C 0.16 2.41 5.66 -5.19 -0.03 2.38 16 13 C -0.17 -2.85 5.22 -100.99 -0.53 -3.38 16 14 C -0.12 -2.33 9.47 -35.78 -0.34 -2.67 16 15 C 0.19 4.52 5.25 -5.03 -0.03 4.49 16 16 N -0.59 -14.70 3.01 -173.58 -0.52 -15.22 16 17 C -0.24 -6.66 9.71 -15.06 -0.15 -6.80 16 18 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 19 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 20 N -0.91 -26.02 11.07 55.49 0.61 -25.41 16 21 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 C 0.14 2.91 6.57 -3.53 -0.02 2.89 16 26 C -0.09 -1.56 5.95 -28.18 -0.17 -1.73 16 27 C -0.06 -0.73 9.48 -39.03 -0.37 -1.10 16 28 C 0.08 0.89 6.80 -84.00 -0.57 0.32 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.22 8.13 -51.93 -0.42 -0.21 16 31 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 1.17 6.36 -52.49 -0.33 0.84 16 36 H 0.40 4.86 6.45 -40.82 -0.26 4.59 16 37 H 0.07 1.05 8.11 -51.93 -0.42 0.62 16 38 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 39 H 0.09 1.61 7.73 -52.48 -0.41 1.21 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 2.45 6.39 -51.94 -0.33 2.12 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.13 1.56 7.62 -52.49 -0.40 1.16 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -33.22 387.69 -10.88 -44.09 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.75 Total: 3.38 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.39 Total: -4.98 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.64 Total: -55.24 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.22 -10.88 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001337340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.469 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds