Wall clock time and date at job start Sat Apr 11 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36564 * 125.06736 * 2 1 4 4 C 1.34459 * 109.97085 * 179.97438 * 3 2 1 5 5 C 1.46248 * 107.03655 * 0.02562 * 4 3 2 6 6 C 1.39922 * 133.83634 * 179.97438 * 5 4 3 7 7 C 1.36201 * 119.95650 * 179.76055 * 6 5 4 8 8 C 1.40243 * 120.37815 * 0.51408 * 7 6 5 9 9 C 1.47577 * 119.83068 * 179.75757 * 8 7 6 10 10 O 1.21586 * 120.00230 * 179.72691 * 9 8 7 11 11 N 1.34778 * 119.99962 * 359.72483 * 9 8 7 12 12 C 1.46494 * 120.00050 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47477 * 179.97438 * 12 11 9 14 14 C 1.29451 * 117.69288 * 94.99671 * 13 12 11 15 15 C 1.50319 * 123.65529 * 181.13868 * 14 13 12 16 16 N 1.47132 * 109.10018 * 348.55136 * 15 14 13 17 17 C 1.36940 * 121.53393 * 223.15538 * 16 15 14 18 18 H 1.07991 * 120.00464 * 156.23153 * 17 16 15 19 19 C 1.38816 * 119.99712 * 336.23276 * 17 16 15 20 20 N 1.31620 * 119.99998 * 344.47735 * 19 17 16 21 21 Si 1.86801 * 119.99831 * 164.47736 * 19 17 16 22 22 H 1.48492 * 109.47175 * 90.00094 * 21 19 17 23 23 H 1.48504 * 109.46897 * 209.99863 * 21 19 17 24 24 H 1.48499 * 109.47160 * 329.99876 * 21 19 17 25 25 C 1.47337 * 117.09112 * 43.37218 * 16 15 14 26 26 C 1.49968 * 117.69436 * 275.02765 * 13 12 11 27 27 C 1.39282 * 120.33543 * 359.47947 * 8 7 6 28 28 C 1.37820 * 125.07050 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47454 * 270.00292 * 1 2 3 30 30 H 1.08995 * 109.47493 * 30.00130 * 1 2 3 31 31 H 1.08999 * 109.47471 * 150.00728 * 1 2 3 32 32 H 1.07993 * 125.01606 * 359.97350 * 3 2 1 33 33 H 1.08007 * 126.47944 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.01594 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.80547 * 180.25042 * 7 6 5 36 36 H 0.97004 * 119.99771 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.46828 * 60.00377 * 12 11 9 38 38 H 1.08996 * 109.47550 * 300.00145 * 12 11 9 39 39 H 1.08004 * 118.17123 * 0.87021 * 14 13 12 40 40 H 1.09005 * 109.52227 * 108.64796 * 15 14 13 41 41 H 1.08988 * 109.52770 * 228.84266 * 15 14 13 42 42 H 0.97003 * 119.99843 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.78002 * 178.39736 * 25 16 15 44 44 H 1.09002 * 109.77673 * 57.59735 * 25 16 15 45 45 H 1.08996 * 109.31096 * 281.28435 * 26 13 12 46 46 H 1.08994 * 109.31663 * 40.71532 * 26 13 12 47 47 H 1.08000 * 120.16252 * 180.27562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1177 0.0000 4 6 3.5478 0.7676 0.0006 5 6 3.5973 -0.6941 0.0003 6 6 4.6388 -1.6285 0.0002 7 6 4.3570 -2.9610 0.0049 8 6 3.0266 -3.4046 -0.0010 9 6 2.7352 -4.8513 -0.0012 10 8 1.5829 -5.2393 -0.0012 11 7 3.7463 -5.7424 -0.0013 12 6 3.4570 -7.1785 -0.0010 13 6 4.7506 -7.9517 -0.0019 14 6 5.2167 -8.3459 1.1397 15 6 6.5057 -9.1032 1.2966 16 7 6.9703 -9.5425 -0.0285 17 6 7.4664 -10.8025 -0.2320 18 1 7.4421 -11.2395 -1.2193 19 6 8.0006 -11.5181 0.8308 20 7 8.3135 -10.8995 1.9496 21 14 8.2753 -13.3591 0.6730 22 1 9.6382 -13.6124 0.1408 23 1 8.1388 -13.9960 2.0076 24 1 7.2672 -13.9323 -0.2545 25 6 6.8835 -8.5654 -1.1279 26 6 5.4076 -8.2095 -1.3251 27 6 1.9790 -2.4867 -0.0008 28 6 2.2569 -1.1280 0.0005 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.8817 2.1331 -0.0004 33 1 4.3939 1.4388 0.0003 34 1 5.6654 -1.2932 0.0007 35 1 5.1628 -3.6801 0.0089 36 1 4.6656 -5.4329 -0.0009 37 1 2.8813 -7.4334 -0.8908 38 1 2.8818 -7.4331 0.8892 39 1 4.6499 -8.1141 2.0293 40 1 7.2549 -8.4563 1.7531 41 1 6.3413 -9.9749 1.9297 42 1 8.6864 -11.3997 2.6924 43 1 7.2828 -9.0032 -2.0428 44 1 7.4479 -7.6692 -0.8702 45 1 4.9011 -9.0355 -1.8242 46 1 5.3319 -7.3164 -1.9453 47 1 0.9555 -2.8314 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001337340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:54 Heat of formation + Delta-G solvation = 51.787176 kcal Electronic energy + Delta-G solvation = -27879.267382 eV Core-core repulsion = 24027.745271 eV Total energy + Delta-G solvation = -3851.522111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32097 -40.89210 -39.36419 -37.72308 -36.44650 -34.57296 -33.81774 -32.67764 -31.46400 -31.33987 -30.39225 -28.41580 -27.14487 -26.07419 -24.51273 -24.02955 -23.19891 -22.74748 -21.56371 -21.06320 -19.50928 -18.88563 -17.92926 -17.38406 -17.31431 -16.98019 -16.81433 -16.41532 -16.13519 -15.87170 -15.50908 -15.30376 -15.15820 -14.97054 -14.76631 -14.49290 -14.35976 -13.96812 -13.90156 -13.78377 -13.56703 -13.26517 -13.20564 -12.91797 -12.82202 -12.77436 -12.57533 -12.24645 -12.19260 -12.10704 -11.99095 -11.69874 -11.29983 -11.12750 -10.69806 -10.67654 -10.16598 -9.65956 -9.24068 -8.74341 -8.62224 -7.87726 -5.28390 -0.26418 0.46371 1.16633 1.47176 1.49045 1.57648 1.58277 1.85549 2.03633 2.40926 2.51902 2.93743 3.29541 3.60466 3.64054 3.77287 3.87223 3.88319 3.96645 3.97883 4.13250 4.27669 4.41731 4.44233 4.49824 4.54114 4.59047 4.69001 4.70299 4.73003 4.76337 4.85358 4.92605 5.00711 5.01324 5.11367 5.22184 5.29306 5.33051 5.41531 5.48608 5.49025 5.62249 5.72172 5.76277 5.77581 6.14859 6.16492 6.34666 6.37054 6.51319 7.14009 7.14665 7.84145 8.38333 9.20928 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.001927 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.005026 B =14529.815412 C =14995.337661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.488 5.488 3 C 0.071 3.929 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.081 4.081 7 C -0.117 4.117 8 C -0.137 4.137 9 C 0.559 3.441 10 O -0.585 6.585 11 N -0.705 5.705 12 C 0.167 3.833 13 C -0.139 4.139 14 C -0.140 4.140 15 C 0.204 3.796 16 N -0.615 5.615 17 C -0.255 4.255 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.138 3.862 26 C -0.084 4.084 27 C -0.067 4.067 28 C 0.059 3.941 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.211 0.789 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.016 0.984 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 27.643 -4.749 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.171 5.171 3 C -0.055 4.055 4 C -0.252 4.252 5 C -0.108 4.108 6 C -0.099 4.099 7 C -0.136 4.136 8 C -0.141 4.141 9 C 0.349 3.651 10 O -0.468 6.468 11 N -0.357 5.357 12 C 0.044 3.956 13 C -0.140 4.140 14 C -0.161 4.161 15 C 0.079 3.921 16 N -0.339 5.339 17 C -0.385 4.385 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.123 4.123 27 C -0.089 4.089 28 C -0.047 4.047 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.228 0.772 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.567 27.275 -4.638 31.267 hybrid contribution 0.666 -1.307 0.412 1.524 sum -13.901 25.968 -4.227 29.756 Atomic orbital electron populations 1.22243 0.75149 1.05641 1.04171 1.44152 1.07305 1.03818 1.61799 1.22591 0.90120 0.92278 1.00546 1.22070 0.97541 0.91808 1.13822 1.19862 0.92034 0.95315 1.03627 1.20478 0.99333 0.91279 0.98853 1.20913 0.94613 0.96807 1.01302 1.19428 0.94649 0.91219 1.08813 1.18472 0.84560 0.86630 0.75473 1.90726 1.21951 1.81480 1.52604 1.45928 1.09905 1.05884 1.73943 1.20274 0.94498 0.78794 1.02039 1.20587 0.96637 1.01229 0.95549 1.22965 0.97774 0.97546 0.97795 1.19434 0.89610 0.95708 0.87324 1.44441 1.72638 1.10947 1.05864 1.19499 1.32127 0.91297 0.95604 0.91180 1.25738 0.99388 1.02582 0.97328 1.70162 1.47430 1.35454 1.05543 0.85270 0.77933 0.80657 0.76563 1.21082 1.22017 1.19751 1.21148 0.94396 0.91922 0.91244 1.20697 0.96312 1.01250 0.94039 1.20030 0.99258 0.89299 1.00273 1.18203 0.91361 0.88336 1.06836 0.90291 0.86792 0.90469 0.77249 0.81340 0.83087 0.83976 0.75063 0.91134 0.91879 0.87026 0.96585 0.92442 0.94136 0.92197 0.95268 0.91810 0.89414 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.02 127.77 1.41 1.94 16 2 N -0.49 -7.13 3.18 -539.42 -1.71 -8.84 16 3 C 0.07 0.76 11.28 83.09 0.94 1.70 16 4 C -0.23 -3.20 11.08 23.49 0.26 -2.94 16 5 C -0.10 -2.05 6.37 -20.14 -0.13 -2.18 16 6 C -0.08 -1.52 10.03 22.20 0.22 -1.30 16 7 C -0.12 -2.41 9.46 22.28 0.21 -2.19 16 8 C -0.14 -3.45 5.87 -20.07 -0.12 -3.57 16 9 C 0.56 16.42 7.76 86.71 0.67 17.09 16 10 O -0.59 -21.14 16.31 -3.99 -0.07 -21.20 16 11 N -0.71 -18.55 5.50 -469.97 -2.58 -21.13 16 12 C 0.17 4.87 5.66 85.64 0.48 5.36 16 13 C -0.14 -4.58 5.22 -15.13 -0.08 -4.65 16 14 C -0.14 -5.29 9.47 27.11 0.26 -5.03 16 15 C 0.20 9.86 5.25 85.39 0.45 10.31 16 16 N -0.61 -30.71 3.01 -703.09 -2.12 -32.83 16 17 C -0.26 -14.04 9.71 84.03 0.82 -13.22 16 18 H 0.07 3.74 7.88 -2.92 -0.02 3.71 16 19 C -0.06 -3.12 5.01 84.86 0.43 -2.69 16 20 N -0.94 -55.42 11.07 21.65 0.24 -55.18 16 21 Si 0.97 45.18 29.58 68.60 2.03 47.21 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 C 0.14 5.49 6.57 86.25 0.57 6.05 16 26 C -0.08 -2.74 5.95 29.65 0.18 -2.56 16 27 C -0.07 -1.64 9.48 22.63 0.21 -1.42 16 28 C 0.06 1.24 6.80 38.96 0.26 1.50 16 29 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.11 0.20 8.13 -2.39 -0.02 0.18 16 31 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.21 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.38 6.36 -2.91 -0.02 2.36 16 36 H 0.41 9.23 6.45 -92.71 -0.60 8.63 16 37 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 38 H 0.06 1.93 7.78 -2.39 -0.02 1.91 16 39 H 0.11 3.79 7.73 -2.91 -0.02 3.77 16 40 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.06 3.15 6.39 -2.39 -0.02 3.14 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.12 3.06 7.62 -2.91 -0.02 3.04 16 Total: -1.00 -73.95 387.69 3.22 -70.73 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.39 Total: 19.08 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.04 Total: 2.18 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -6.17 Total: -117.99 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.07 Total: -21.20 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.95 3.22 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001337340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.514 kcal (2) G-P(sol) polarization free energy of solvation -73.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds