Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00049 * 2 1 4 4 O 1.21606 * 119.99895 * 184.50816 * 3 2 1 5 5 C 1.47432 * 120.00464 * 4.50200 * 3 2 1 6 6 C 1.38747 * 120.33177 * 312.39332 * 5 3 2 7 7 C 1.38865 * 120.72861 * 180.02562 * 6 5 3 8 8 C 1.36351 * 121.05635 * 359.71507 * 7 6 5 9 9 C 1.40443 * 120.08313 * 0.02782 * 8 7 6 10 10 C 1.40809 * 121.26355 * 179.97438 * 9 8 7 11 11 C 1.36637 * 118.15366 * 180.02562 * 10 9 8 12 12 C 1.39236 * 119.90680 * 359.97438 * 11 10 9 13 13 N 1.31230 * 121.69508 * 0.02562 * 12 11 10 14 14 C 1.33350 * 121.35414 * 359.95368 * 13 12 11 15 15 C 1.46505 * 119.99934 * 179.97438 * 2 1 3 16 16 C 1.53042 * 109.45592 * 60.02929 * 15 2 1 17 17 C 1.53187 * 109.30959 * 178.59908 * 16 15 2 18 18 N 1.46924 * 108.76769 * 54.66184 * 17 16 15 19 19 C 1.36934 * 120.63484 * 126.40518 * 18 17 16 20 20 H 1.07997 * 119.99815 * 322.29267 * 19 18 17 21 21 C 1.38814 * 120.00133 * 142.30477 * 19 18 17 22 22 N 1.31618 * 119.99970 * 358.28513 * 21 19 18 23 23 Si 1.86797 * 119.99995 * 178.29564 * 21 19 18 24 24 H 1.48508 * 109.46994 * 59.99452 * 23 21 19 25 25 H 1.48496 * 109.47213 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47314 * 299.99555 * 23 21 19 27 27 C 1.46927 * 118.73330 * 306.37867 * 18 17 16 28 28 C 1.53041 * 109.46191 * 299.97836 * 15 2 1 29 29 H 1.09002 * 109.47264 * 92.87865 * 1 2 3 30 30 H 1.08997 * 109.47443 * 212.88387 * 1 2 3 31 31 H 1.08997 * 109.47034 * 332.88500 * 1 2 3 32 32 H 1.08006 * 119.63642 * 359.76773 * 6 5 3 33 33 H 1.07994 * 119.47255 * 179.73937 * 7 6 5 34 34 H 1.07996 * 119.96129 * 180.02562 * 8 7 6 35 35 H 1.07997 * 120.92637 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.04560 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.14819 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.45860 * 179.97438 * 15 2 1 39 39 H 1.08998 * 109.49867 * 298.56605 * 16 15 2 40 40 H 1.09001 * 109.49731 * 58.66108 * 16 15 2 41 41 H 1.08993 * 109.60206 * 294.86677 * 17 16 15 42 42 H 1.09007 * 109.69926 * 174.50729 * 17 16 15 43 43 H 0.96998 * 119.99945 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.59002 * 293.82147 * 27 18 17 45 45 H 1.08998 * 109.70479 * 173.46253 * 27 18 17 46 46 H 1.08999 * 109.49335 * 301.33672 * 28 15 2 47 47 H 1.09001 * 109.49813 * 61.39961 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1688 -0.0828 5 6 1.4052 2.4420 0.1002 6 6 0.2983 2.6784 -0.7022 7 6 -0.3985 3.8764 -0.6150 8 6 -0.0191 4.8485 0.2627 9 6 1.0925 4.6485 1.0974 10 6 1.5064 5.6357 2.0123 11 6 2.5967 5.3744 2.7932 12 6 3.2634 4.1583 2.6700 13 7 2.8735 3.2416 1.8157 14 6 1.8170 3.4344 1.0253 15 6 2.1975 -1.2688 0.0006 16 6 1.8281 -2.0712 -1.2491 17 6 2.6219 -3.3813 -1.2630 18 7 2.3848 -4.0911 0.0014 19 6 1.9518 -5.3901 0.0018 20 1 1.2386 -5.7218 -0.7383 21 6 2.4294 -6.2807 0.9535 22 7 3.3237 -5.8853 1.8345 23 14 1.8030 -8.0402 0.9836 24 1 2.1130 -8.6983 -0.3111 25 1 2.4646 -8.7824 2.0866 26 1 0.3338 -8.0390 1.1989 27 6 2.6216 -3.3805 1.2655 28 6 1.8280 -2.0703 1.2508 29 1 -0.3634 -0.0516 -1.0264 30 1 -0.3634 -0.8630 0.5579 31 1 -0.3633 0.9147 0.4684 32 1 -0.0226 1.9239 -1.4053 33 1 -1.2548 4.0407 -1.2522 34 1 -0.5741 5.7734 0.3160 35 1 0.9767 6.5732 2.0945 36 1 2.9409 6.1101 3.5049 37 1 4.1241 3.9648 3.2931 38 1 3.2691 -1.0694 0.0000 39 1 0.7608 -2.2924 -1.2372 40 1 2.0697 -1.4902 -2.1392 41 1 3.6849 -3.1636 -1.3660 42 1 2.2934 -4.0013 -2.0972 43 1 3.6577 -6.5077 2.4993 44 1 3.6847 -3.1627 1.3687 45 1 2.2923 -3.9978 2.1013 46 1 2.0696 -1.4886 2.1404 47 1 0.7607 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005674750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 53.303504 kcal Electronic energy + Delta-G solvation = -29315.880750 eV Core-core repulsion = 25464.424392 eV Total energy + Delta-G solvation = -3851.456358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24345 -39.62100 -37.45755 -37.01468 -34.97646 -33.74136 -32.43558 -30.88789 -30.65362 -29.91876 -29.33460 -26.88248 -25.36850 -24.59216 -23.78763 -23.38145 -22.08889 -21.61786 -19.53710 -18.83242 -18.61779 -17.38731 -17.13221 -16.68662 -16.37044 -15.70484 -15.30792 -14.91546 -14.71317 -14.43289 -14.15150 -14.09689 -13.75233 -13.54243 -13.31524 -13.30642 -12.93909 -12.72198 -12.52042 -12.49536 -12.29777 -12.19356 -11.80796 -11.57338 -11.40734 -10.95791 -10.80574 -10.76567 -10.74178 -10.24025 -10.16799 -10.05545 -9.84476 -9.74161 -9.56340 -9.31160 -9.07381 -8.51802 -8.46659 -8.20687 -6.48445 -5.76462 -3.30910 -0.04583 0.53475 1.56244 2.54805 2.96862 3.26144 3.39425 3.44578 3.45213 3.88253 4.03262 4.24037 4.45483 4.47673 4.50218 4.59381 4.68279 4.79695 4.99502 5.09349 5.22191 5.33742 5.40382 5.45343 5.48876 5.57058 5.60939 5.64748 5.71273 5.74314 5.78606 5.92212 5.95906 6.01487 6.16382 6.18716 6.30919 6.43915 6.49192 6.57556 6.65849 6.72492 6.86219 7.00070 7.05780 7.42773 7.62864 7.75995 7.79026 7.82270 8.43516 8.55714 9.27320 9.85655 10.48532 11.31709 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.002566 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.982993 B =10910.039918 C =11510.354933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.604 5.604 3 C 0.560 3.440 4 O -0.515 6.515 5 C -0.094 4.094 6 C -0.071 4.071 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.109 4.109 10 C -0.059 4.059 11 C -0.175 4.175 12 C 0.135 3.865 13 N -0.452 5.452 14 C 0.159 3.841 15 C 0.148 3.852 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.258 4.258 20 H 0.061 0.939 21 C 0.011 3.989 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.177 3.823 28 C -0.146 4.146 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 25.261 -1.038 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.347 3.653 4 O -0.390 6.390 5 C -0.098 4.098 6 C -0.091 4.091 7 C -0.140 4.140 8 C -0.099 4.099 9 C -0.111 4.111 10 C -0.085 4.085 11 C -0.195 4.195 12 C -0.038 4.038 13 N -0.159 5.159 14 C 0.037 3.963 15 C 0.046 3.954 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.051 3.949 28 C -0.186 4.186 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.001 24.267 -1.087 25.575 hybrid contribution -0.868 -0.006 0.200 0.890 sum -8.868 24.261 -0.887 25.846 Atomic orbital electron populations 1.21948 0.80478 1.03285 1.01496 1.48050 1.06748 1.06119 1.72724 1.17924 0.87168 0.83007 0.77178 1.90797 1.13178 1.86716 1.48343 1.19922 0.96713 0.95119 0.98047 1.21558 0.92490 0.97603 0.97469 1.20840 1.00526 0.93305 0.99305 1.21113 0.94950 0.99383 0.94482 1.18801 0.97906 0.95258 0.99159 1.21461 0.95700 0.98066 0.93247 1.21949 0.97219 0.99122 1.01201 1.23132 0.98014 0.88891 0.93758 1.68140 1.11916 1.31792 1.04081 1.18567 0.91718 0.91536 0.94503 1.21188 0.97288 0.80573 0.96303 1.22363 1.01270 0.98064 0.96004 1.20889 0.95771 0.90812 0.90425 1.43965 1.77932 1.10329 0.99275 1.19053 1.19127 0.85289 1.15322 0.92144 1.25381 0.96423 0.97816 0.99220 1.69925 1.31022 1.34573 1.19014 0.86368 0.78198 0.84832 0.77270 1.20798 1.21596 1.20938 1.20745 0.95231 0.88385 0.90537 1.22592 1.01489 0.99119 0.95436 0.92673 0.90511 0.91284 0.84290 0.84791 0.84944 0.84263 0.84365 0.82180 0.88653 0.92202 0.93042 0.96231 0.92505 0.93437 0.96155 0.89362 0.93154 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.15 59.85 0.49 1.36 16 2 N -0.60 -9.82 2.76 -175.15 -0.48 -10.30 16 3 C 0.56 9.85 6.98 -12.52 -0.09 9.76 16 4 O -0.52 -11.12 15.84 5.27 0.08 -11.03 16 5 C -0.09 -1.34 4.98 -104.61 -0.52 -1.86 16 6 C -0.07 -0.72 7.54 -39.16 -0.30 -1.02 16 7 C -0.12 -0.94 9.93 -40.03 -0.40 -1.34 16 8 C -0.08 -0.63 9.75 -39.43 -0.38 -1.01 16 9 C -0.11 -1.14 5.74 -106.82 -0.61 -1.76 16 10 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 11 C -0.18 -1.41 10.03 -39.79 -0.40 -1.80 16 12 C 0.13 1.49 11.15 -17.44 -0.19 1.30 16 13 N -0.45 -6.96 9.37 -10.76 -0.10 -7.07 16 14 C 0.16 2.26 6.59 -84.58 -0.56 1.70 16 15 C 0.15 2.81 2.48 -67.88 -0.17 2.64 16 16 C -0.14 -2.50 5.34 -26.61 -0.14 -2.65 16 17 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 18 N -0.59 -15.11 2.97 -172.32 -0.51 -15.62 16 19 C -0.26 -7.11 9.52 -15.06 -0.14 -7.26 16 20 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 21 C 0.01 0.31 5.21 -17.43 -0.09 0.22 16 22 N -0.90 -26.44 11.06 55.49 0.61 -25.83 16 23 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.18 4.37 5.20 -3.71 -0.02 4.35 16 28 C -0.15 -2.96 5.30 -26.61 -0.14 -3.10 16 29 H 0.05 0.56 7.51 -51.93 -0.39 0.17 16 30 H 0.08 0.98 6.46 -51.93 -0.34 0.64 16 31 H 0.07 0.74 5.62 -51.93 -0.29 0.44 16 32 H 0.14 1.20 6.39 -52.48 -0.34 0.86 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.10 2.07 6.91 -51.93 -0.36 1.71 16 39 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 2.40 6.32 -51.93 -0.33 2.08 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.11 6.74 -51.93 -0.35 0.76 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -35.28 373.80 -10.42 -45.70 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.55 Total: -0.06 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.08 Total: 1.88 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.48 Total: -58.81 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.28 -10.42 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005674750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.005 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds