Wall clock time and date at job start Sat Apr 11 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99985 * 2 1 4 4 O 1.21538 * 119.99864 * 184.69009 * 3 2 1 5 5 C 1.47898 * 119.99846 * 4.69646 * 3 2 1 6 6 C 1.38894 * 121.11528 * 310.99973 * 5 3 2 7 7 C 1.39263 * 119.58458 * 180.02562 * 6 5 3 8 8 N 1.30999 * 121.88216 * 359.97438 * 7 6 5 9 9 C 1.33532 * 121.82798 * 0.02562 * 8 7 6 10 10 C 1.40718 * 120.97310 * 179.97438 * 9 8 7 11 11 C 1.36056 * 119.74073 * 180.02562 * 10 9 8 12 12 C 1.39349 * 121.05543 * 359.76702 * 11 10 9 13 13 C 1.36241 * 120.83889 * 0.50172 * 12 11 10 14 14 C 1.40103 * 119.64587 * 359.48170 * 13 12 11 15 15 C 1.46500 * 120.00054 * 179.97438 * 2 1 3 16 16 C 1.53045 * 109.45636 * 60.02842 * 15 2 1 17 17 C 1.53191 * 109.31110 * 178.59935 * 16 15 2 18 18 N 1.46920 * 108.76720 * 54.65805 * 17 16 15 19 19 C 1.36934 * 120.63233 * 126.39965 * 18 17 16 20 20 H 1.08002 * 120.00295 * 322.50228 * 19 18 17 21 21 C 1.38819 * 120.00136 * 142.49894 * 19 18 17 22 22 N 1.31620 * 119.99471 * 358.68399 * 21 19 18 23 23 Si 1.86797 * 120.00286 * 178.68374 * 21 19 18 24 24 H 1.48494 * 109.47074 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46862 * 120.00127 * 23 21 19 26 26 H 1.48501 * 109.46889 * 240.00019 * 23 21 19 27 27 C 1.46927 * 118.73679 * 306.38548 * 18 17 16 28 28 C 1.53039 * 109.46116 * 299.97680 * 15 2 1 29 29 H 1.09004 * 109.47042 * 93.04921 * 1 2 3 30 30 H 1.08996 * 109.47436 * 213.05189 * 1 2 3 31 31 H 1.09003 * 109.47101 * 333.05217 * 1 2 3 32 32 H 1.08009 * 120.20770 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.06234 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.12231 * 0.02562 * 10 9 8 35 35 H 1.08001 * 119.46780 * 179.97438 * 11 10 9 36 36 H 1.08002 * 119.57935 * 180.28549 * 12 11 10 37 37 H 1.08003 * 120.17814 * 179.76507 * 13 12 11 38 38 H 1.08996 * 109.46194 * 180.02562 * 15 2 1 39 39 H 1.08999 * 109.49888 * 298.56628 * 16 15 2 40 40 H 1.09006 * 109.49479 * 58.66567 * 16 15 2 41 41 H 1.09000 * 109.60102 * 294.86909 * 17 16 15 42 42 H 1.09000 * 109.70047 * 174.50891 * 17 16 15 43 43 H 0.97008 * 120.00051 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58814 * 293.81228 * 27 18 17 45 45 H 1.09008 * 109.70095 * 173.46202 * 27 18 17 46 46 H 1.09003 * 109.49780 * 301.33490 * 28 15 2 47 47 H 1.09003 * 109.49957 * 61.43444 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3512 1.1690 -0.0861 5 6 1.4031 2.4459 0.1049 6 6 0.3079 2.7124 -0.7067 7 6 -0.3613 3.9273 -0.5814 8 7 0.0111 4.8361 0.2855 9 6 1.0542 4.6489 1.0979 10 6 1.4389 5.6378 2.0222 11 6 2.5061 5.4208 2.8376 12 6 3.2263 4.2294 2.7775 13 6 2.8863 3.2518 1.8916 14 6 1.7924 3.4409 1.0369 15 6 2.1975 -1.2687 0.0006 16 6 1.8281 -2.0712 -1.2492 17 6 2.6220 -3.3813 -1.2630 18 7 2.3849 -4.0910 0.0014 19 6 1.9518 -5.3901 0.0018 20 1 1.2411 -5.7226 -0.7403 21 6 2.4264 -6.2797 0.9559 22 7 3.3121 -5.8812 1.8442 23 14 1.8079 -8.0421 0.9793 24 1 0.8241 -8.2360 -0.1161 25 1 2.9510 -8.9704 0.7874 26 1 1.1573 -8.3211 2.2847 27 6 2.6217 -3.3805 1.2655 28 6 1.8281 -2.0702 1.2509 29 1 -0.3633 -0.0547 -1.0262 30 1 -0.3634 -0.8613 0.5605 31 1 -0.3633 0.9161 0.4657 32 1 -0.0222 1.9824 -1.4311 33 1 -1.2121 4.1256 -1.2164 34 1 0.8890 6.5652 2.0839 35 1 2.7978 6.1830 3.5451 36 1 4.0667 4.0804 3.4393 37 1 3.4542 2.3340 1.8515 38 1 3.2691 -1.0694 0.0009 39 1 0.7608 -2.2924 -1.2372 40 1 2.0698 -1.4902 -2.1392 41 1 3.6850 -3.1636 -1.3660 42 1 2.2934 -4.0012 -2.0972 43 1 3.6435 -6.5027 2.5113 44 1 3.6847 -3.1627 1.3687 45 1 2.2923 -3.9979 2.1013 46 1 2.0697 -1.4885 2.1405 47 1 0.7608 -2.2915 1.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005679126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:02 Heat of formation + Delta-G solvation = 50.647885 kcal Electronic energy + Delta-G solvation = -29323.015340 eV Core-core repulsion = 25471.443826 eV Total energy + Delta-G solvation = -3851.571514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38027 -39.73286 -37.47471 -37.35171 -35.23484 -33.80347 -32.40819 -30.86807 -30.52878 -30.03951 -29.52130 -27.09517 -25.78166 -24.59274 -23.83926 -23.13601 -22.21650 -21.73220 -19.77198 -18.97076 -18.46790 -17.69345 -17.26030 -16.76370 -16.43519 -15.60155 -15.42595 -14.93593 -14.71783 -14.50265 -14.38647 -14.15359 -13.88579 -13.73852 -13.58967 -13.41947 -13.05332 -12.79224 -12.61707 -12.47619 -12.36194 -11.99203 -11.81774 -11.62508 -11.52614 -11.08378 -10.91177 -10.82385 -10.72100 -10.40326 -10.30964 -10.18374 -10.11728 -9.88272 -9.69157 -9.47391 -9.06217 -8.59320 -8.50801 -8.41397 -6.57882 -5.84271 -3.38776 -0.06365 0.51868 1.53922 2.53827 2.69625 2.97054 3.33098 3.40864 3.42481 3.83516 3.96326 4.15592 4.41123 4.43817 4.45053 4.57582 4.83554 4.90340 5.03181 5.06241 5.22075 5.23939 5.29141 5.36530 5.37714 5.48555 5.54158 5.58843 5.64969 5.74827 5.77551 5.80974 6.03357 6.05618 6.13723 6.21638 6.22984 6.28383 6.43597 6.49703 6.56351 6.58437 6.74374 6.80638 6.92891 7.30547 7.38177 7.57682 7.65990 7.75863 8.05378 8.47652 9.19335 9.77376 10.39390 11.23903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002555 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.407863 B =10957.866901 C =11555.478947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.595 5.595 3 C 0.554 3.446 4 O -0.527 6.527 5 C -0.055 4.055 6 C -0.147 4.147 7 C 0.129 3.871 8 N -0.465 5.465 9 C 0.127 3.873 10 C -0.097 4.097 11 C -0.097 4.097 12 C -0.115 4.115 13 C -0.087 4.087 14 C -0.069 4.069 15 C 0.145 3.855 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.258 4.258 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.176 3.824 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 21.251 -1.085 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.341 3.659 4 O -0.404 6.404 5 C -0.066 4.066 6 C -0.168 4.168 7 C -0.043 4.043 8 N -0.173 5.173 9 C 0.005 3.995 10 C -0.116 4.116 11 C -0.117 4.117 12 C -0.133 4.133 13 C -0.106 4.106 14 C -0.072 4.072 15 C 0.044 3.956 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.216 1.216 27 C 0.050 3.950 28 C -0.187 4.187 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.608 21.929 -0.859 22.919 hybrid contribution 0.042 -1.723 -0.074 1.725 sum -6.565 20.206 -0.933 21.266 Atomic orbital electron populations 1.22007 0.79887 1.03577 1.02024 1.48122 1.07182 1.06073 1.71249 1.18154 0.87150 0.83257 0.77361 1.90800 1.13166 1.86854 1.49584 1.20467 0.95245 0.94650 0.96257 1.22500 0.94871 0.99353 1.00040 1.22901 0.98226 0.88603 0.94593 1.67803 1.13347 1.31759 1.04422 1.18836 0.92213 0.92630 0.95799 1.20794 0.97473 0.98504 0.94832 1.20971 0.94826 0.97400 0.98482 1.21031 1.00103 0.93510 0.98636 1.21254 0.95124 1.00454 0.93771 1.18618 0.97381 0.94062 0.97143 1.21299 0.97227 0.80372 0.96745 1.22369 1.01455 0.98116 0.95788 1.20892 0.95753 0.90761 0.90520 1.43983 1.77891 1.10399 0.99231 1.19151 1.19285 0.85206 1.15118 0.91954 1.25382 0.96446 0.97900 0.99121 1.69936 1.31563 1.34400 1.18628 0.86210 0.78046 0.84951 0.77496 1.20175 1.21477 1.21588 1.20767 0.95181 0.88323 0.90720 1.22621 1.01771 0.99217 0.95125 0.92211 0.90139 0.91127 0.83623 0.81732 0.84537 0.85084 0.85154 0.84220 0.88516 0.92042 0.92934 0.96188 0.92366 0.93497 0.96144 0.89127 0.93132 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.22 59.85 0.49 1.23 16 2 N -0.60 -8.56 2.76 -174.98 -0.48 -9.04 16 3 C 0.55 8.47 6.72 -12.30 -0.08 8.38 16 4 O -0.53 -9.78 14.79 5.33 0.08 -9.71 16 5 C -0.05 -0.71 4.95 -104.34 -0.52 -1.22 16 6 C -0.15 -1.45 7.71 -38.96 -0.30 -1.75 16 7 C 0.13 1.18 11.14 -17.53 -0.20 0.98 16 8 N -0.47 -5.35 10.30 -11.01 -0.11 -5.46 16 9 C 0.13 1.54 6.61 -84.87 -0.56 0.98 16 10 C -0.10 -0.97 9.98 -39.43 -0.39 -1.36 16 11 C -0.10 -0.84 9.94 -39.95 -0.40 -1.24 16 12 C -0.11 -1.15 9.96 -39.89 -0.40 -1.55 16 13 C -0.09 -1.11 9.21 -39.60 -0.36 -1.48 16 14 C -0.07 -0.91 5.76 -106.52 -0.61 -1.53 16 15 C 0.14 2.49 2.48 -67.89 -0.17 2.32 16 16 C -0.14 -2.33 5.34 -26.61 -0.14 -2.47 16 17 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 18 N -0.59 -14.46 2.97 -172.32 -0.51 -14.97 16 19 C -0.26 -6.88 9.53 -15.06 -0.14 -7.03 16 20 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 21 C 0.01 0.30 5.21 -17.43 -0.09 0.21 16 22 N -0.90 -25.67 11.02 55.49 0.61 -25.06 16 23 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.18 4.12 5.21 -3.71 -0.02 4.10 16 28 C -0.15 -2.74 5.30 -26.61 -0.14 -2.88 16 29 H 0.06 0.54 7.62 -51.93 -0.40 0.14 16 30 H 0.08 0.92 6.47 -51.93 -0.34 0.58 16 31 H 0.07 0.67 5.66 -51.93 -0.29 0.38 16 32 H 0.15 1.11 6.64 -52.48 -0.35 0.76 16 33 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.97 6.31 -52.48 -0.33 1.64 16 38 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 39 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.37 6.30 -51.92 -0.33 2.04 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -32.02 371.75 -10.38 -42.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.48 Total: 1.32 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -4.06 Total: -1.27 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.50 Total: -54.53 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.02 -10.38 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005679126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.054 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds