Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21587 * 119.99944 * 185.32495 * 3 2 1 5 5 C 1.47549 * 120.00056 * 5.32334 * 3 2 1 6 6 C 1.38697 * 120.38706 * 44.41674 * 5 3 2 7 7 C 1.38975 * 120.53662 * 179.69914 * 6 5 3 8 8 C 1.36202 * 121.23543 * 0.57592 * 7 6 5 9 9 C 1.40706 * 120.20027 * 359.73029 * 8 7 6 10 10 N 1.33692 * 120.93279 * 180.02562 * 9 8 7 11 11 C 1.31064 * 121.33930 * 180.02562 * 10 9 8 12 12 C 1.39341 * 121.70851 * 359.95238 * 11 10 9 13 13 C 1.36669 * 119.86764 * 0.02562 * 12 11 10 14 14 C 1.40475 * 118.17356 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00126 * 179.97438 * 2 1 3 16 16 C 1.53036 * 109.46137 * 60.02953 * 15 2 1 17 17 C 1.53190 * 109.31307 * 178.59947 * 16 15 2 18 18 N 1.46928 * 108.76440 * 54.65967 * 17 16 15 19 19 C 1.36935 * 120.63369 * 126.40225 * 18 17 16 20 20 H 1.08003 * 120.00089 * 330.65209 * 19 18 17 21 21 C 1.38813 * 120.00090 * 150.64690 * 19 18 17 22 22 N 1.31622 * 119.99859 * 341.51138 * 21 19 18 23 23 Si 1.86799 * 120.00037 * 161.51165 * 21 19 18 24 24 H 1.48497 * 109.47179 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47120 * 120.00258 * 23 21 19 26 26 H 1.48507 * 109.46890 * 239.99661 * 23 21 19 27 27 C 1.46932 * 118.73700 * 306.38132 * 18 17 16 28 28 C 1.53045 * 109.45875 * 299.97468 * 15 2 1 29 29 H 1.09000 * 109.47622 * 273.91565 * 1 2 3 30 30 H 1.09004 * 109.47185 * 153.92005 * 1 2 3 31 31 H 1.08995 * 109.47572 * 33.92005 * 1 2 3 32 32 H 1.08002 * 119.72913 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.37352 * 180.26046 * 7 6 5 34 34 H 1.07998 * 119.89591 * 179.70078 * 8 7 6 35 35 H 1.07999 * 119.14534 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.06649 * 179.97438 * 12 11 10 37 37 H 1.08007 * 120.91585 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.46105 * 180.02562 * 15 2 1 39 39 H 1.09001 * 109.49923 * 298.56532 * 16 15 2 40 40 H 1.08995 * 109.49871 * 58.66017 * 16 15 2 41 41 H 1.09000 * 109.60138 * 294.86761 * 17 16 15 42 42 H 1.09008 * 109.70248 * 174.50480 * 17 16 15 43 43 H 0.97006 * 119.99853 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58398 * 293.82405 * 27 18 17 45 45 H 1.08999 * 109.70246 * 173.47133 * 27 18 17 46 46 H 1.08996 * 109.49740 * 301.33149 * 28 15 2 47 47 H 1.08995 * 109.49707 * 61.40457 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3507 1.1695 -0.0977 5 6 1.4058 2.4423 0.1186 6 6 0.3860 2.5815 1.0483 7 6 -0.3023 3.7830 1.1669 8 6 -0.0060 4.8482 0.3714 9 6 1.0166 4.7507 -0.5901 10 7 1.3200 5.7871 -1.3782 11 6 2.2706 5.7050 -2.2768 12 6 3.0110 4.5381 -2.4550 13 6 2.7511 3.4422 -1.6809 14 6 1.7312 3.5360 -0.7195 15 6 2.1974 -1.2687 0.0006 16 6 1.8281 -2.0713 -1.2491 17 6 2.6221 -3.3813 -1.2628 18 7 2.3849 -4.0910 0.0017 19 6 1.9519 -5.3901 0.0021 20 1 1.3465 -5.7578 -0.8132 21 6 2.2911 -6.2344 1.0504 22 7 3.2982 -5.9298 1.8413 23 14 1.3184 -7.8029 1.3386 24 1 0.2443 -7.9136 0.3192 25 1 2.2250 -8.9742 1.2324 26 1 0.7123 -7.7675 2.6939 27 6 2.6217 -3.3804 1.2657 28 6 1.8280 -2.0702 1.2510 29 1 -0.3634 0.0702 1.0252 30 1 -0.3634 -0.9231 -0.4518 31 1 -0.3634 0.8527 -0.5734 32 1 0.1277 1.7508 1.6884 33 1 -1.0902 3.8720 1.9001 34 1 -0.5579 5.7702 0.4788 35 1 2.4858 6.5641 -2.8948 36 1 3.7883 4.4996 -3.2039 37 1 3.3148 2.5292 -1.8044 38 1 3.2690 -1.0693 0.0009 39 1 0.7609 -2.2925 -1.2371 40 1 2.0697 -1.4903 -2.1391 41 1 3.6851 -3.1636 -1.3659 42 1 2.2936 -4.0014 -2.0970 43 1 3.5354 -6.5200 2.5736 44 1 3.6847 -3.1625 1.3689 45 1 2.2924 -3.9977 2.1016 46 1 2.0697 -1.4885 2.1405 47 1 0.7607 -2.2910 1.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005796073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 51.332215 kcal Electronic energy + Delta-G solvation = -29317.293395 eV Core-core repulsion = 25465.751556 eV Total energy + Delta-G solvation = -3851.541840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.33372 -39.81963 -37.61134 -37.08326 -35.20095 -33.67285 -32.55521 -30.86713 -30.74666 -30.06612 -29.41371 -27.05010 -25.47530 -24.60211 -23.80772 -23.45286 -22.24647 -21.71002 -19.68927 -18.96049 -18.53246 -17.41068 -17.22263 -16.82453 -16.48911 -15.92255 -15.33526 -14.87151 -14.81958 -14.52268 -14.42962 -14.05665 -13.75263 -13.60742 -13.54030 -13.35605 -13.07318 -12.77572 -12.66132 -12.53547 -12.36059 -12.19443 -11.83769 -11.58391 -11.51755 -11.20065 -10.86900 -10.78834 -10.76663 -10.43866 -10.23908 -10.15502 -10.13800 -9.78827 -9.68602 -9.45887 -9.09455 -8.60283 -8.52633 -8.37782 -6.71705 -5.83672 -3.26454 -0.05528 0.52801 1.53653 2.44496 2.81614 3.04535 3.34110 3.42434 3.44431 3.83579 3.97656 4.21532 4.45828 4.46104 4.51592 4.60266 4.73239 4.83123 5.02257 5.06759 5.13746 5.26736 5.31795 5.37033 5.44520 5.50299 5.54275 5.58607 5.66736 5.68375 5.80973 5.82025 5.98549 6.01015 6.05098 6.17599 6.22617 6.25750 6.42844 6.48411 6.50973 6.55388 6.72374 6.82259 6.90781 7.26490 7.41574 7.57733 7.60309 7.77021 8.12273 8.40822 9.16362 9.79616 10.37474 11.25260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.002503 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.884967 B =11182.945547 C =11720.509157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.598 5.598 3 C 0.555 3.445 4 O -0.534 6.534 5 C -0.099 4.099 6 C -0.081 4.081 7 C -0.106 4.106 8 C -0.076 4.076 9 C 0.121 3.879 10 N -0.477 5.477 11 C 0.133 3.867 12 C -0.176 4.176 13 C -0.048 4.048 14 C -0.069 4.069 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.176 3.824 28 C -0.145 4.145 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 21.767 -4.738 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.343 3.657 4 O -0.412 6.412 5 C -0.103 4.103 6 C -0.100 4.100 7 C -0.126 4.126 8 C -0.095 4.095 9 C 0.000 4.000 10 N -0.185 5.185 11 C -0.040 4.040 12 C -0.196 4.196 13 C -0.073 4.073 14 C -0.072 4.072 15 C 0.043 3.957 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.049 3.951 28 C -0.185 4.185 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.246 22.366 -4.474 23.932 hybrid contribution -0.017 -1.569 0.189 1.580 sum -7.262 20.797 -4.285 22.442 Atomic orbital electron populations 1.21922 0.79905 1.03460 1.01684 1.48103 1.07089 1.06103 1.71648 1.18199 0.87139 0.83411 0.76979 1.90778 1.13494 1.87077 1.49825 1.19976 0.97672 0.93938 0.98670 1.21575 0.93081 0.98396 0.96941 1.20849 1.00001 0.92360 0.99372 1.20948 0.95486 0.99503 0.93513 1.18811 0.96188 0.88909 0.96068 1.68052 1.16172 1.29018 1.05261 1.22990 0.90126 0.97197 0.93695 1.21980 1.01931 0.94230 1.01467 1.21811 0.93918 0.99949 0.91660 1.18588 0.97506 0.93865 0.97208 1.21267 0.97291 0.80574 0.96551 1.22375 1.01429 0.98093 0.95910 1.20866 0.95805 0.90846 0.90400 1.44082 1.77830 1.10173 0.99329 1.19183 1.25152 0.86437 1.07736 0.91663 1.25081 0.96538 0.97599 1.00246 1.70065 1.26008 1.38369 1.19865 0.86264 0.79709 0.83209 0.77823 1.20221 1.21692 1.21536 1.20702 0.95365 0.88624 0.90398 1.22565 1.01740 0.98909 0.95277 0.92401 0.90072 0.91495 0.84385 0.84511 0.84384 0.82244 0.84254 0.83201 0.88534 0.91977 0.92901 0.96189 0.92386 0.93610 0.96055 0.89569 0.93059 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 8.07 59.84 0.48 1.28 16 2 N -0.60 -8.56 2.76 -175.12 -0.48 -9.04 16 3 C 0.56 8.43 6.78 -12.46 -0.08 8.34 16 4 O -0.53 -9.82 14.42 5.29 0.08 -9.74 16 5 C -0.10 -1.25 4.89 -104.66 -0.51 -1.76 16 6 C -0.08 -0.80 7.96 -39.14 -0.31 -1.12 16 7 C -0.11 -0.87 9.92 -40.04 -0.40 -1.26 16 8 C -0.08 -0.72 9.96 -39.38 -0.39 -1.11 16 9 C 0.12 1.44 6.60 -84.88 -0.56 0.88 16 10 N -0.48 -5.52 10.34 -10.99 -0.11 -5.63 16 11 C 0.13 1.24 11.15 -17.47 -0.19 1.04 16 12 C -0.18 -1.68 10.03 -39.74 -0.40 -2.08 16 13 C -0.05 -0.58 9.23 -39.31 -0.36 -0.95 16 14 C -0.07 -0.88 5.76 -106.53 -0.61 -1.50 16 15 C 0.14 2.48 2.48 -67.89 -0.17 2.31 16 16 C -0.14 -2.34 5.32 -26.61 -0.14 -2.48 16 17 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 18 N -0.59 -14.43 2.98 -172.31 -0.51 -14.94 16 19 C -0.26 -6.84 9.56 -15.06 -0.14 -6.99 16 20 H 0.07 1.72 7.90 -52.48 -0.41 1.31 16 21 C 0.00 0.12 4.86 -17.43 -0.08 0.04 16 22 N -0.90 -25.81 11.39 55.49 0.63 -25.18 16 23 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.18 4.09 5.30 -3.71 -0.02 4.07 16 28 C -0.14 -2.66 5.34 -26.61 -0.14 -2.81 16 29 H 0.06 0.54 6.79 -51.93 -0.35 0.18 16 30 H 0.08 0.90 6.46 -51.93 -0.34 0.57 16 31 H 0.07 0.64 6.71 -51.93 -0.35 0.29 16 32 H 0.14 1.17 6.20 -52.49 -0.33 0.85 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 2.00 6.14 -52.48 -0.32 1.68 16 38 H 0.10 1.88 6.91 -51.93 -0.36 1.53 16 39 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.23 6.22 -51.93 -0.32 1.91 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.38 371.34 -10.37 -42.75 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.46 Total: 1.05 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -4.07 Total: -1.08 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.48 Total: -54.79 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.38 -10.37 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005796073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.079 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds