Wall clock time and date at job start Sat Apr 11 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21587 * 119.99944 * 185.32495 * 3 2 1 5 5 C 1.47549 * 120.00056 * 5.32334 * 3 2 1 6 6 C 1.38697 * 120.38706 * 44.41674 * 5 3 2 7 7 C 1.38975 * 120.53662 * 179.69914 * 6 5 3 8 8 C 1.36202 * 121.23543 * 0.57592 * 7 6 5 9 9 C 1.40706 * 120.20027 * 359.73029 * 8 7 6 10 10 N 1.33692 * 120.93279 * 180.02562 * 9 8 7 11 11 C 1.31064 * 121.33930 * 180.02562 * 10 9 8 12 12 C 1.39341 * 121.70851 * 359.95238 * 11 10 9 13 13 C 1.36669 * 119.86764 * 0.02562 * 12 11 10 14 14 C 1.40475 * 118.17356 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00126 * 179.97438 * 2 1 3 16 16 C 1.53036 * 109.46137 * 60.02953 * 15 2 1 17 17 C 1.53190 * 109.31307 * 178.59947 * 16 15 2 18 18 N 1.46928 * 108.76440 * 54.65967 * 17 16 15 19 19 C 1.36935 * 120.63369 * 126.40225 * 18 17 16 20 20 H 1.08003 * 120.00089 * 330.65209 * 19 18 17 21 21 C 1.38813 * 120.00090 * 150.64690 * 19 18 17 22 22 N 1.31622 * 119.99859 * 341.51138 * 21 19 18 23 23 Si 1.86799 * 120.00037 * 161.51165 * 21 19 18 24 24 H 1.48497 * 109.47179 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47120 * 120.00258 * 23 21 19 26 26 H 1.48507 * 109.46890 * 239.99661 * 23 21 19 27 27 C 1.46932 * 118.73700 * 306.38132 * 18 17 16 28 28 C 1.53045 * 109.45875 * 299.97468 * 15 2 1 29 29 H 1.09000 * 109.47622 * 273.91565 * 1 2 3 30 30 H 1.09004 * 109.47185 * 153.92005 * 1 2 3 31 31 H 1.08995 * 109.47572 * 33.92005 * 1 2 3 32 32 H 1.08002 * 119.72913 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.37352 * 180.26046 * 7 6 5 34 34 H 1.07998 * 119.89591 * 179.70078 * 8 7 6 35 35 H 1.07999 * 119.14534 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.06649 * 179.97438 * 12 11 10 37 37 H 1.08007 * 120.91585 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.46105 * 180.02562 * 15 2 1 39 39 H 1.09001 * 109.49923 * 298.56532 * 16 15 2 40 40 H 1.08995 * 109.49871 * 58.66017 * 16 15 2 41 41 H 1.09000 * 109.60138 * 294.86761 * 17 16 15 42 42 H 1.09008 * 109.70248 * 174.50480 * 17 16 15 43 43 H 0.97006 * 119.99853 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58398 * 293.82405 * 27 18 17 45 45 H 1.08999 * 109.70246 * 173.47133 * 27 18 17 46 46 H 1.08996 * 109.49740 * 301.33149 * 28 15 2 47 47 H 1.08995 * 109.49707 * 61.40457 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3507 1.1695 -0.0977 5 6 1.4058 2.4423 0.1186 6 6 0.3860 2.5815 1.0483 7 6 -0.3023 3.7830 1.1669 8 6 -0.0060 4.8482 0.3714 9 6 1.0166 4.7507 -0.5901 10 7 1.3200 5.7871 -1.3782 11 6 2.2706 5.7050 -2.2768 12 6 3.0110 4.5381 -2.4550 13 6 2.7511 3.4422 -1.6809 14 6 1.7312 3.5360 -0.7195 15 6 2.1974 -1.2687 0.0006 16 6 1.8281 -2.0713 -1.2491 17 6 2.6221 -3.3813 -1.2628 18 7 2.3849 -4.0910 0.0017 19 6 1.9519 -5.3901 0.0021 20 1 1.3465 -5.7578 -0.8132 21 6 2.2911 -6.2344 1.0504 22 7 3.2982 -5.9298 1.8413 23 14 1.3184 -7.8029 1.3386 24 1 0.2443 -7.9136 0.3192 25 1 2.2250 -8.9742 1.2324 26 1 0.7123 -7.7675 2.6939 27 6 2.6217 -3.3804 1.2657 28 6 1.8280 -2.0702 1.2510 29 1 -0.3634 0.0702 1.0252 30 1 -0.3634 -0.9231 -0.4518 31 1 -0.3634 0.8527 -0.5734 32 1 0.1277 1.7508 1.6884 33 1 -1.0902 3.8720 1.9001 34 1 -0.5579 5.7702 0.4788 35 1 2.4858 6.5641 -2.8948 36 1 3.7883 4.4996 -3.2039 37 1 3.3148 2.5292 -1.8044 38 1 3.2690 -1.0693 0.0009 39 1 0.7609 -2.2925 -1.2371 40 1 2.0697 -1.4903 -2.1391 41 1 3.6851 -3.1636 -1.3659 42 1 2.2936 -4.0014 -2.0970 43 1 3.5354 -6.5200 2.5736 44 1 3.6847 -3.1625 1.3689 45 1 2.2924 -3.9977 2.1016 46 1 2.0697 -1.4885 2.1405 47 1 0.7607 -2.2910 1.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005796073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:04 Heat of formation + Delta-G solvation = 32.636190 kcal Electronic energy + Delta-G solvation = -29318.104116 eV Core-core repulsion = 25465.751556 eV Total energy + Delta-G solvation = -3852.352560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.20730 -40.92741 -39.07463 -37.94151 -36.63733 -34.59514 -34.19708 -32.18694 -31.62725 -31.58057 -30.74541 -28.07602 -27.11223 -25.56214 -24.73452 -24.48169 -23.90521 -23.14386 -20.95160 -20.35623 -19.37266 -18.74233 -18.22607 -18.05550 -17.61461 -17.08025 -16.74555 -16.25193 -15.73522 -15.62964 -15.42433 -15.36150 -15.21911 -14.90422 -14.72713 -14.50252 -14.23433 -14.19087 -14.03526 -13.66466 -13.34735 -13.19840 -13.07315 -12.96584 -12.65055 -12.63247 -12.51666 -12.34679 -12.13164 -11.97302 -11.91038 -11.62256 -11.50831 -11.35538 -11.16500 -10.58486 -10.47115 -9.83285 -9.69394 -9.31477 -8.72307 -7.89737 -5.36055 -0.85025 -0.22038 0.66556 1.46849 1.49098 1.55737 1.59828 1.81642 2.01803 2.50941 3.04163 3.25994 3.27086 3.32065 3.62747 3.70488 3.76300 3.80912 3.87708 3.98044 4.00889 4.13471 4.20692 4.29259 4.38691 4.42497 4.43755 4.58691 4.63735 4.67249 4.75006 4.76735 4.83026 4.89587 4.99771 5.00996 5.02650 5.07788 5.10930 5.26298 5.26364 5.29485 5.40722 5.47716 5.54545 5.62629 5.67027 5.77189 6.30273 6.37387 6.83181 6.98475 7.12185 7.81648 8.35912 9.17801 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.002503 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.884967 B =11182.945547 C =11720.509157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.595 5.595 3 C 0.554 3.446 4 O -0.578 6.578 5 C -0.126 4.126 6 C -0.066 4.066 7 C -0.097 4.097 8 C -0.074 4.074 9 C 0.100 3.900 10 N -0.492 5.492 11 C 0.131 3.869 12 C -0.165 4.165 13 C -0.079 4.079 14 C -0.086 4.086 15 C 0.155 3.845 16 C -0.121 4.121 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.262 4.262 20 H 0.070 0.930 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.289 1.289 27 C 0.183 3.817 28 C -0.126 4.126 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.197 0.803 36 H 0.166 0.834 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.006 0.994 42 H 0.063 0.937 43 H 0.250 0.750 44 H -0.011 1.011 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 23.761 -5.066 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.326 5.326 3 C 0.344 3.656 4 O -0.459 6.459 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.092 4.092 9 C -0.020 4.020 10 N -0.200 5.200 11 C -0.042 4.042 12 C -0.184 4.184 13 C -0.105 4.105 14 C -0.088 4.088 15 C 0.052 3.948 16 C -0.161 4.161 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.088 0.912 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.215 1.215 27 C 0.057 3.943 28 C -0.166 4.166 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.214 0.786 36 H 0.183 0.817 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.007 0.993 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.360 24.383 -4.826 26.929 hybrid contribution 0.987 -2.097 0.231 2.329 sum -9.374 22.285 -4.595 24.609 Atomic orbital electron populations 1.22190 0.77323 1.04323 1.03535 1.48003 1.08486 1.04691 1.71373 1.18642 0.86738 0.84360 0.75857 1.90749 1.15614 1.87732 1.51810 1.19782 0.99541 0.92681 1.01029 1.21857 0.91521 0.99643 0.95442 1.21227 1.00117 0.90912 0.99388 1.21304 0.94583 1.00755 0.92577 1.19161 0.97098 0.88646 0.97139 1.68114 1.17004 1.28998 1.05866 1.23595 0.89148 0.98076 0.93351 1.22298 1.01894 0.93389 1.00858 1.21790 0.94954 1.00309 0.93462 1.18751 0.97990 0.94488 0.97593 1.20847 0.96120 0.81905 0.95935 1.22161 1.01414 0.96052 0.96486 1.20988 0.95692 0.92449 0.89066 1.44335 1.77963 1.10077 1.00693 1.19535 1.24613 0.87430 1.07676 0.91205 1.25867 0.97458 1.00851 1.00335 1.70223 1.27764 1.39665 1.20525 0.85212 0.78371 0.79128 0.77738 1.18742 1.22226 1.21549 1.20470 0.94166 0.90386 0.89323 1.22281 1.01417 0.96429 0.96447 0.90130 0.89948 0.89795 0.82757 0.80575 0.82317 0.78614 0.81663 0.85380 0.91597 0.90553 0.91336 0.97637 0.91816 0.94075 0.99284 0.92490 0.92186 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 8.07 127.77 1.03 2.32 16 2 N -0.60 -16.51 2.76 -826.21 -2.28 -18.79 16 3 C 0.55 16.98 6.78 86.70 0.59 17.57 16 4 O -0.58 -22.42 14.42 -3.99 -0.06 -22.47 16 5 C -0.13 -3.11 4.89 -19.89 -0.10 -3.20 16 6 C -0.07 -1.12 7.96 22.56 0.18 -0.94 16 7 C -0.10 -1.21 9.92 21.97 0.22 -0.99 16 8 C -0.07 -1.17 9.96 22.40 0.22 -0.95 16 9 C 0.10 2.23 6.60 40.27 0.27 2.50 16 10 N -0.49 -10.49 10.34 -188.69 -1.95 -12.44 16 11 C 0.13 2.19 11.15 85.07 0.95 3.13 16 12 C -0.16 -3.00 10.03 22.17 0.22 -2.78 16 13 C -0.08 -1.99 9.23 22.45 0.21 -1.78 16 14 C -0.09 -2.17 5.76 -21.10 -0.12 -2.29 16 15 C 0.16 5.33 2.48 45.02 0.11 5.44 16 16 C -0.12 -4.04 5.32 30.67 0.16 -3.88 16 17 C 0.14 6.01 6.52 86.36 0.56 6.57 16 18 N -0.61 -30.24 2.98 -699.06 -2.09 -32.33 16 19 C -0.26 -14.18 9.56 84.03 0.80 -13.37 16 20 H 0.07 3.65 7.90 -2.91 -0.02 3.62 16 21 C -0.05 -2.74 4.86 84.86 0.41 -2.32 16 22 N -0.94 -55.55 11.39 21.65 0.25 -55.31 16 23 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 27 C 0.18 8.85 5.30 86.36 0.46 9.31 16 28 C -0.13 -4.62 5.34 30.67 0.16 -4.46 16 29 H 0.08 1.19 6.79 -2.39 -0.02 1.17 16 30 H 0.08 1.58 6.46 -2.39 -0.02 1.56 16 31 H 0.08 1.34 6.71 -2.39 -0.02 1.33 16 32 H 0.15 2.05 6.20 -2.91 -0.02 2.03 16 33 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.13 3.72 6.14 -2.91 -0.02 3.70 16 38 H 0.07 2.70 6.91 -2.39 -0.02 2.69 16 39 H 0.08 2.36 6.72 -2.39 -0.02 2.34 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 2.54 7.93 -2.38 -0.02 2.53 16 43 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 44 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 45 H 0.06 3.07 6.22 -2.39 -0.01 3.06 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 2.50 7.72 -2.39 -0.02 2.48 16 Total: -1.00 -74.41 371.34 3.23 -71.18 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.99 Total: 14.18 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.34 Total: 9.86 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.07 Total: -118.86 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.41 3.23 -71.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005796073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.818 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds