Wall clock time and date at job start Sat Apr 11 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 119.99825 * 2 1 4 4 O 1.21541 * 119.99914 * 184.02479 * 3 2 1 5 5 C 1.47951 * 120.00032 * 4.02503 * 3 2 1 6 6 N 1.32197 * 120.15748 * 285.64057 * 5 3 2 7 7 C 1.32024 * 122.68220 * 180.02562 * 6 5 3 8 8 C 1.36705 * 122.02613 * 359.40557 * 7 6 5 9 9 C 1.40533 * 118.83882 * 0.88987 * 8 7 6 10 10 C 1.40322 * 122.21712 * 179.12929 * 9 8 7 11 11 C 1.36208 * 119.44987 * 180.02562 * 10 9 8 12 12 C 1.39378 * 121.00507 * 359.97438 * 11 10 9 13 13 C 1.36260 * 121.08277 * 0.03847 * 12 11 10 14 14 C 1.40099 * 119.53530 * 0.23647 * 13 12 11 15 15 C 1.46492 * 120.00420 * 179.97438 * 2 1 3 16 16 C 1.53039 * 109.46070 * 60.02623 * 15 2 1 17 17 C 1.53194 * 109.31707 * 178.60451 * 16 15 2 18 18 N 1.46923 * 108.76338 * 54.65558 * 17 16 15 19 19 C 1.36939 * 120.63084 * 126.41086 * 18 17 16 20 20 H 1.08000 * 119.99697 * 329.86855 * 19 18 17 21 21 C 1.38809 * 120.00172 * 149.87085 * 19 18 17 22 22 N 1.31621 * 120.00123 * 341.32807 * 21 19 18 23 23 Si 1.86799 * 119.99795 * 161.32194 * 21 19 18 24 24 H 1.48496 * 109.47289 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47019 * 120.00111 * 23 21 19 26 26 H 1.48501 * 109.47389 * 240.00090 * 23 21 19 27 27 C 1.46923 * 118.74002 * 306.38512 * 18 17 16 28 28 C 1.53045 * 109.46015 * 299.97914 * 15 2 1 29 29 H 1.09003 * 109.47011 * 89.30209 * 1 2 3 30 30 H 1.09000 * 109.47233 * 209.30377 * 1 2 3 31 31 H 1.09005 * 109.47417 * 329.30306 * 1 2 3 32 32 H 1.07996 * 118.98898 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.57280 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.27500 * 0.02763 * 10 9 8 35 35 H 1.08003 * 119.49896 * 180.02562 * 11 10 9 36 36 H 1.07999 * 119.46676 * 180.02562 * 12 11 10 37 37 H 1.07992 * 120.23820 * 179.97438 * 13 12 11 38 38 H 1.08995 * 109.46346 * 180.02562 * 15 2 1 39 39 H 1.09006 * 109.50281 * 298.57183 * 16 15 2 40 40 H 1.09000 * 109.49411 * 58.66320 * 16 15 2 41 41 H 1.09001 * 109.59178 * 294.86894 * 17 16 15 42 42 H 1.08997 * 109.70263 * 174.50859 * 17 16 15 43 43 H 0.96995 * 119.99479 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.59052 * 293.82329 * 27 18 17 45 45 H 1.09004 * 109.70490 * 173.46753 * 27 18 17 46 46 H 1.09008 * 109.49382 * 301.33247 * 28 15 2 47 47 H 1.08999 * 109.49766 * 61.42575 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3520 1.1686 -0.0739 5 6 1.4018 2.4470 0.0899 6 7 0.7375 2.9058 -0.9569 7 6 0.0639 4.0409 -0.9322 8 6 -0.0033 4.8198 0.1893 9 6 0.6821 4.4058 1.3442 10 6 0.6762 5.1590 2.5281 11 6 1.3606 4.7045 3.6145 12 6 2.0656 3.5031 3.5678 13 6 2.0927 2.7469 2.4346 14 6 1.4052 3.1851 1.2953 15 6 2.1976 -1.2686 0.0006 16 6 1.8282 -2.0712 -1.2490 17 6 2.6221 -3.3813 -1.2628 18 7 2.3850 -4.0909 0.0016 19 6 1.9521 -5.3901 0.0021 20 1 1.3362 -5.7542 -0.8069 21 6 2.3047 -6.2388 1.0423 22 7 3.3241 -5.9394 1.8193 23 14 1.3325 -7.8059 1.3395 24 1 0.2438 -7.9111 0.3350 25 1 2.2345 -8.9791 1.2157 26 1 0.7465 -7.7738 2.7036 27 6 2.6218 -3.3804 1.2656 28 6 1.8281 -2.0702 1.2509 29 1 -0.3633 0.0125 -1.0276 30 1 -0.3634 -0.8962 0.5030 31 1 -0.3634 0.8837 0.5246 32 1 -0.4583 4.3592 -1.8223 33 1 -0.5616 5.7443 0.1834 34 1 0.1335 6.0915 2.5775 35 1 1.3563 5.2835 4.5262 36 1 2.5994 3.1660 4.4440 37 1 2.6437 1.8184 2.4135 38 1 3.2691 -1.0692 0.0009 39 1 0.7609 -2.2925 -1.2372 40 1 2.0698 -1.4902 -2.1391 41 1 3.6851 -3.1635 -1.3659 42 1 2.2936 -4.0013 -2.0970 43 1 3.5706 -6.5327 2.5459 44 1 3.6848 -3.1625 1.3688 45 1 2.2925 -3.9977 2.1015 46 1 2.0697 -1.4884 2.1405 47 1 0.7608 -2.2913 1.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005895388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:10 Heat of formation + Delta-G solvation = 49.295367 kcal Electronic energy + Delta-G solvation = -29421.770094 eV Core-core repulsion = 25570.139930 eV Total energy + Delta-G solvation = -3851.630164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38791 -39.64063 -37.69120 -37.34024 -35.12180 -33.41071 -32.36401 -31.54665 -30.38661 -29.95318 -29.49749 -26.91372 -25.78878 -24.59142 -23.87464 -23.20048 -22.20477 -21.79676 -19.88560 -18.90587 -18.13843 -17.85740 -17.15588 -16.75941 -16.48667 -15.91451 -15.31305 -15.00027 -14.67707 -14.41751 -14.35753 -14.05829 -13.92257 -13.61148 -13.59820 -13.13050 -13.01164 -12.82160 -12.58175 -12.49004 -12.43477 -12.16839 -12.13525 -11.53786 -11.46264 -11.18453 -10.83536 -10.73706 -10.53393 -10.35861 -10.23806 -10.15874 -10.09792 -9.77838 -9.67122 -9.47785 -9.43463 -8.55131 -8.38512 -8.35298 -6.66860 -5.80611 -3.23532 -0.08755 0.57404 1.51198 2.45090 2.71593 2.95225 3.36467 3.44826 3.47030 3.69671 4.03234 4.20293 4.38677 4.46314 4.49203 4.56863 4.79628 4.83398 5.00708 5.03394 5.16876 5.30451 5.38115 5.40322 5.43297 5.45604 5.50090 5.64057 5.65055 5.73201 5.78173 5.86783 6.03756 6.07292 6.10972 6.19885 6.23333 6.31487 6.48066 6.49765 6.54601 6.59915 6.78460 6.85026 6.97329 7.28580 7.42441 7.57195 7.59522 7.80872 8.11017 8.44756 9.19889 9.83056 10.41624 11.28324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002708 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.626538 B =10337.013029 C =10973.640941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.590 5.590 3 C 0.573 3.427 4 O -0.525 6.525 5 C 0.150 3.850 6 N -0.458 5.458 7 C 0.080 3.920 8 C -0.147 4.147 9 C -0.024 4.024 10 C -0.115 4.115 11 C -0.093 4.093 12 C -0.115 4.115 13 C -0.080 4.080 14 C -0.083 4.083 15 C 0.145 3.855 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.177 3.823 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.253 0.747 44 H 0.022 0.978 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 23.706 1.651 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.321 5.321 3 C 0.358 3.642 4 O -0.400 6.400 5 C -0.004 4.004 6 N -0.169 5.169 7 C -0.065 4.065 8 C -0.166 4.166 9 C -0.029 4.029 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.133 4.133 13 C -0.100 4.100 14 C -0.086 4.086 15 C 0.043 3.957 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.542 5.542 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.050 3.950 28 C -0.186 4.186 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.011 23.168 0.896 24.530 hybrid contribution -0.618 -0.154 0.963 1.154 sum -8.630 23.014 1.859 24.649 Atomic orbital electron populations 1.21731 0.79580 1.02661 1.02178 1.48081 1.07273 1.05819 1.70958 1.17817 0.86793 0.82747 0.76893 1.90830 1.12863 1.86563 1.49794 1.21435 0.94279 0.95250 0.89419 1.67408 1.06088 1.14499 1.28867 1.22248 0.96183 0.89946 0.98159 1.22079 1.00137 1.01287 0.93123 1.18130 0.96196 0.93617 0.94977 1.20964 1.00508 0.99825 0.92024 1.21050 0.95699 0.95896 0.98601 1.21013 0.99153 0.94718 0.98411 1.21102 0.96953 1.00137 0.91800 1.18671 0.99756 0.95505 0.94680 1.21302 0.97261 0.80407 0.96706 1.22361 1.01486 0.97945 0.95926 1.20879 0.95836 0.90855 0.90350 1.44073 1.77847 1.10149 0.99339 1.19179 1.24526 0.86352 1.08422 0.91702 1.25089 0.96401 0.97535 1.00382 1.70068 1.25246 1.38280 1.20647 0.86274 0.79738 0.83243 0.77817 1.20212 1.21719 1.21559 1.20678 0.95376 0.88556 0.90355 1.22592 1.01797 0.98979 0.95247 0.92041 0.90099 0.92325 0.82299 0.84046 0.84853 0.85273 0.85078 0.84732 0.88452 0.91969 0.92696 0.96142 0.92343 0.93654 0.95972 0.89756 0.93018 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 9.31 59.85 0.56 1.61 16 2 N -0.59 -9.32 2.76 -174.96 -0.48 -9.81 16 3 C 0.57 9.62 6.07 -12.28 -0.07 9.55 16 4 O -0.53 -10.48 16.39 5.33 0.09 -10.40 16 5 C 0.15 2.16 4.69 -82.55 -0.39 1.78 16 6 N -0.46 -6.16 10.15 -9.81 -0.10 -6.26 16 7 C 0.08 0.79 11.06 -18.02 -0.20 0.59 16 8 C -0.15 -1.24 9.88 -39.27 -0.39 -1.63 16 9 C -0.02 -0.25 5.75 -106.82 -0.61 -0.86 16 10 C -0.12 -0.91 9.82 -39.53 -0.39 -1.30 16 11 C -0.09 -0.71 9.95 -39.89 -0.40 -1.11 16 12 C -0.11 -1.06 9.95 -39.87 -0.40 -1.46 16 13 C -0.08 -0.96 9.42 -39.60 -0.37 -1.34 16 14 C -0.08 -1.07 5.76 -106.59 -0.61 -1.68 16 15 C 0.14 2.59 2.48 -67.89 -0.17 2.43 16 16 C -0.14 -2.46 5.34 -26.61 -0.14 -2.60 16 17 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 18 N -0.59 -14.65 2.98 -172.32 -0.51 -15.17 16 19 C -0.26 -6.92 9.55 -15.06 -0.14 -7.06 16 20 H 0.07 1.73 7.90 -52.49 -0.41 1.32 16 21 C 0.01 0.14 4.85 -17.43 -0.08 0.06 16 22 N -0.90 -25.93 11.46 55.49 0.64 -25.29 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.18 4.15 5.30 -3.71 -0.02 4.13 16 28 C -0.15 -2.74 5.31 -26.61 -0.14 -2.88 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.02 6.46 -51.93 -0.34 0.69 16 31 H 0.06 0.70 6.83 -51.93 -0.35 0.34 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.75 7.20 -52.49 -0.38 1.38 16 38 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 39 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 2.19 6.28 -51.93 -0.33 1.87 16 46 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 47 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -32.72 378.90 -10.38 -43.10 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.69 Total: 0.39 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -4.00 Total: 1.33 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.46 Total: -56.52 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.72 -10.38 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005895388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.398 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds