Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 120.00515 * 2 1 4 4 O 1.21558 * 120.00246 * 183.38995 * 3 2 1 5 5 C 1.47770 * 119.99493 * 3.38884 * 3 2 1 6 6 C 1.40628 * 119.80876 * 328.09210 * 5 3 2 7 7 C 1.35698 * 120.92394 * 179.97438 * 6 5 3 8 8 C 1.40757 * 120.11572 * 359.96251 * 7 6 5 9 9 N 1.33641 * 120.84005 * 180.02562 * 8 7 6 10 10 C 1.31122 * 121.39460 * 179.97438 * 9 8 7 11 11 C 1.39308 * 121.77174 * 0.04998 * 10 9 8 12 12 C 1.36584 * 119.90286 * 359.91896 * 11 10 9 13 13 C 1.40885 * 118.15595 * 0.05192 * 12 11 10 14 14 C 1.38548 * 119.80388 * 148.07160 * 5 3 2 15 15 C 1.46507 * 119.99894 * 180.02562 * 2 1 3 16 16 C 1.53037 * 109.46060 * 60.06686 * 15 2 1 17 17 C 1.53188 * 109.31393 * 178.61877 * 16 15 2 18 18 N 1.46928 * 108.77817 * 54.63188 * 17 16 15 19 19 C 1.36942 * 120.62593 * 126.41591 * 18 17 16 20 20 H 1.07997 * 119.99950 * 329.84923 * 19 18 17 21 21 C 1.38813 * 119.99266 * 149.85912 * 19 18 17 22 22 N 1.31620 * 120.00242 * 344.10230 * 21 19 18 23 23 Si 1.86806 * 119.99752 * 164.11332 * 21 19 18 24 24 H 1.48502 * 109.47356 * 89.99085 * 23 21 19 25 25 H 1.48500 * 109.46914 * 209.99772 * 23 21 19 26 26 H 1.48503 * 109.46583 * 329.99198 * 23 21 19 27 27 C 1.46924 * 118.74015 * 306.39558 * 18 17 16 28 28 C 1.53042 * 109.45590 * 300.00069 * 15 2 1 29 29 H 1.09005 * 109.47429 * 95.61666 * 1 2 3 30 30 H 1.08995 * 109.47616 * 215.61861 * 1 2 3 31 31 H 1.09005 * 109.47153 * 335.62126 * 1 2 3 32 32 H 1.08003 * 119.53731 * 359.97438 * 6 5 3 33 33 H 1.08000 * 119.94365 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.11231 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.05147 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.91933 * 180.32654 * 12 11 10 37 37 H 1.08004 * 120.30049 * 0.02562 * 14 5 3 38 38 H 1.08998 * 109.46048 * 180.02562 * 15 2 1 39 39 H 1.08997 * 109.49842 * 298.56652 * 16 15 2 40 40 H 1.08999 * 109.49455 * 58.66672 * 16 15 2 41 41 H 1.09005 * 109.58718 * 294.84730 * 17 16 15 42 42 H 1.09000 * 109.70779 * 174.49964 * 17 16 15 43 43 H 0.97004 * 119.99632 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58746 * 293.81995 * 27 18 17 45 45 H 1.09001 * 109.70531 * 173.45989 * 27 18 17 46 46 H 1.08994 * 109.49927 * 301.33389 * 28 15 2 47 47 H 1.09002 * 109.49831 * 61.43553 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3529 1.1680 -0.0622 5 6 1.4020 2.4458 0.0757 6 6 0.1241 2.5513 -0.5018 7 6 -0.5728 3.7143 -0.4451 8 6 -0.0207 4.8379 0.1982 9 7 -0.6945 5.9902 0.2630 10 6 -0.1908 7.0434 0.8600 11 6 1.0686 7.0171 1.4549 12 6 1.8114 5.8712 1.4262 13 6 1.2665 4.7416 0.7844 14 6 1.9740 3.5334 0.7154 15 6 2.1974 -1.2688 -0.0006 16 6 1.8288 -2.0698 -1.2514 17 6 2.6223 -3.3801 -1.2661 18 7 2.3847 -4.0911 -0.0024 19 6 1.9517 -5.3902 -0.0037 20 1 1.3358 -5.7533 -0.8132 21 6 2.3042 -6.2402 1.0356 22 7 3.2886 -5.9151 1.8466 23 14 1.3816 -7.8456 1.2830 24 1 2.0461 -8.9231 0.5067 25 1 1.3839 -8.2006 2.7249 26 1 -0.0187 -7.6890 0.8140 27 6 2.6210 -3.3819 1.2624 28 6 1.8274 -2.0716 1.2488 29 1 -0.3634 -0.1006 -1.0228 30 1 -0.3634 -0.8353 0.5985 31 1 -0.3634 0.9361 0.4242 32 1 -0.3087 1.6948 -0.9972 33 1 -1.5529 3.7779 -0.8943 34 1 -0.7677 7.9559 0.8909 35 1 1.4567 7.9012 1.9390 36 1 2.7874 5.8310 1.8868 37 1 2.9556 3.4508 1.1584 38 1 3.2690 -1.0694 0.0000 39 1 0.7616 -2.2910 -1.2403 40 1 2.0710 -1.4877 -2.1406 41 1 3.6855 -3.1623 -1.3685 42 1 2.2942 -3.9991 -2.1011 43 1 3.5351 -6.5093 2.5726 44 1 3.6840 -3.1642 1.3663 45 1 2.2913 -4.0001 2.0975 46 1 2.0687 -1.4909 2.1390 47 1 0.7602 -2.2928 1.2362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005913013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = 63.701859 kcal Electronic energy + Delta-G solvation = -28826.085040 eV Core-core repulsion = 24975.079588 eV Total energy + Delta-G solvation = -3851.005452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30121 -40.04316 -37.68684 -36.86776 -35.24792 -33.85348 -32.65840 -31.15210 -30.43222 -30.08872 -29.49199 -27.15203 -25.73017 -24.55609 -24.01190 -22.60728 -22.21027 -21.97633 -20.11515 -19.01655 -18.63524 -17.50138 -17.23765 -16.76021 -16.22026 -15.76229 -15.31972 -14.93804 -14.82530 -14.64006 -14.40708 -14.17733 -13.80223 -13.61512 -13.54274 -13.42673 -13.05345 -13.01387 -12.67778 -12.50190 -12.35647 -12.31847 -11.88056 -11.49853 -11.30726 -11.14440 -10.91074 -10.84946 -10.73092 -10.35199 -10.23702 -10.12731 -9.92145 -9.85015 -9.74116 -9.53097 -9.08485 -8.67271 -8.53801 -8.33035 -6.67390 -5.81118 -3.25708 -0.07299 0.34292 1.58908 2.21878 2.95733 3.14112 3.35926 3.42937 3.44764 3.76315 3.89936 4.22103 4.30720 4.33715 4.47570 4.51422 4.69108 4.73993 4.82772 5.09366 5.13273 5.27824 5.32146 5.38586 5.40302 5.46611 5.55357 5.59418 5.61662 5.66365 5.69340 5.84068 5.89701 5.97782 6.05813 6.12405 6.19389 6.30801 6.40818 6.46562 6.54030 6.60204 6.75807 6.85891 6.94783 7.30359 7.46740 7.51765 7.62409 7.78021 8.19084 8.44035 9.19141 9.81775 10.39956 11.27741 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002184 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.586214 B =12820.206666 C =12988.497959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.553 3.447 4 O -0.537 6.537 5 C -0.123 4.123 6 C -0.087 4.087 7 C -0.102 4.102 8 C 0.140 3.860 9 N -0.478 5.478 10 C 0.137 3.863 11 C -0.182 4.182 12 C -0.046 4.046 13 C -0.112 4.112 14 C -0.033 4.033 15 C 0.145 3.855 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 24.807 -1.364 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.330 5.330 3 C 0.341 3.659 4 O -0.415 6.415 5 C -0.126 4.126 6 C -0.107 4.107 7 C -0.120 4.120 8 C 0.019 3.981 9 N -0.186 5.186 10 C -0.035 4.035 11 C -0.202 4.202 12 C -0.072 4.072 13 C -0.114 4.114 14 C -0.052 4.052 15 C 0.044 3.956 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.049 3.951 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.884 24.587 -1.683 25.875 hybrid contribution 0.320 -0.792 0.635 1.065 sum -7.565 23.795 -1.047 24.990 Atomic orbital electron populations 1.22415 0.80383 1.03858 1.01840 1.48042 1.06938 1.06235 1.71752 1.18268 0.87120 0.83492 0.77016 1.90785 1.13369 1.87122 1.50185 1.20010 0.95601 0.94760 1.02243 1.21615 0.92956 0.98505 0.97621 1.20706 1.01008 0.90606 0.99710 1.19017 0.90481 0.92730 0.95873 1.68074 1.34975 0.99108 1.16466 1.23031 0.92896 0.96561 0.91044 1.21902 0.96411 0.99445 1.02441 1.21583 0.99587 0.91598 0.94424 1.18794 0.95933 0.95198 1.01517 1.21393 0.98884 0.89974 0.94986 1.21251 0.97289 0.80584 0.96512 1.22360 1.01428 0.98041 0.95914 1.20873 0.95823 0.90868 0.90399 1.44062 1.77844 1.10189 0.99348 1.19138 1.24611 0.86295 1.08373 0.91767 1.25119 0.96646 0.97647 1.00090 1.70025 1.27288 1.37753 1.19474 0.86313 0.79735 0.83678 0.77114 1.21344 1.21567 1.20470 1.20717 0.95335 0.88584 0.90445 1.22576 1.01697 0.98996 0.95335 0.92071 0.90423 0.89805 0.83084 0.84120 0.82278 0.84302 0.84024 0.84007 0.88545 0.92039 0.92896 0.96199 0.92400 0.93570 0.96076 0.89420 0.93053 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 7.90 59.84 0.47 1.10 16 2 N -0.60 -8.75 2.76 -175.03 -0.48 -9.23 16 3 C 0.55 8.51 7.43 -12.36 -0.09 8.41 16 4 O -0.54 -10.17 16.05 5.31 0.09 -10.08 16 5 C -0.12 -1.51 5.45 -104.98 -0.57 -2.09 16 6 C -0.09 -0.87 7.31 -39.59 -0.29 -1.16 16 7 C -0.10 -0.99 9.95 -39.54 -0.39 -1.39 16 8 C 0.14 1.54 6.61 -84.78 -0.56 0.98 16 9 N -0.48 -4.99 10.33 -10.92 -0.11 -5.10 16 10 C 0.14 1.03 11.15 -17.46 -0.19 0.83 16 11 C -0.18 -1.17 10.03 -39.78 -0.40 -1.57 16 12 C -0.05 -0.36 9.89 -39.18 -0.39 -0.75 16 13 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 14 C -0.03 -0.37 9.34 -38.74 -0.36 -0.73 16 15 C 0.15 2.54 2.48 -67.89 -0.17 2.38 16 16 C -0.14 -2.37 5.34 -26.61 -0.14 -2.52 16 17 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 18 N -0.59 -14.61 2.98 -172.31 -0.51 -15.13 16 19 C -0.25 -6.87 9.57 -15.06 -0.14 -7.02 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 22 N -0.90 -26.01 11.28 55.49 0.63 -25.39 16 23 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.18 4.15 5.28 -3.71 -0.02 4.13 16 28 C -0.15 -2.75 5.29 -26.61 -0.14 -2.89 16 29 H 0.06 0.57 7.43 -51.93 -0.39 0.18 16 30 H 0.08 0.88 6.48 -51.93 -0.34 0.55 16 31 H 0.08 0.77 4.70 -51.93 -0.24 0.53 16 32 H 0.15 1.24 4.80 -52.48 -0.25 0.99 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.54 7.93 -52.48 -0.42 1.12 16 38 H 0.10 1.93 6.90 -51.93 -0.36 1.57 16 39 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.30 6.19 -51.93 -0.32 1.98 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.08 6.76 -51.93 -0.35 0.73 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -33.13 372.35 -10.34 -43.47 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.41 Total: 0.46 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -4.12 Total: -0.98 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.48 Total: -54.85 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.13 -10.34 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005913013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.170 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds