Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99671 * 2 1 4 4 O 1.21569 * 119.99879 * 185.58974 * 3 2 1 5 5 C 1.47752 * 120.00261 * 5.58721 * 3 2 1 6 6 C 1.40594 * 120.27005 * 210.76101 * 5 3 2 7 7 N 1.30797 * 121.54036 * 179.76134 * 6 5 3 8 8 C 1.33826 * 121.71627 * 0.49986 * 7 6 5 9 9 C 1.40525 * 120.81025 * 179.73237 * 8 7 6 10 10 C 1.36133 * 119.81489 * 180.02562 * 9 8 7 11 11 C 1.39344 * 121.08446 * 0.02562 * 10 9 8 12 12 C 1.36144 * 120.83783 * 359.97438 * 11 10 9 13 13 C 1.40543 * 119.61699 * 0.02562 * 12 11 10 14 14 C 1.39021 * 120.26584 * 31.03351 * 5 3 2 15 15 C 1.46496 * 120.00324 * 179.97438 * 2 1 3 16 16 C 1.53039 * 109.45914 * 300.00077 * 15 2 1 17 17 C 1.53199 * 109.31497 * 181.38300 * 16 15 2 18 18 N 1.46928 * 108.89285 * 305.29918 * 17 16 15 19 19 C 1.36935 * 120.62785 * 233.67359 * 18 17 16 20 20 H 1.08007 * 120.00252 * 30.23246 * 19 18 17 21 21 C 1.38809 * 119.99776 * 210.23383 * 19 18 17 22 22 N 1.31621 * 120.00335 * 11.02229 * 21 19 18 23 23 Si 1.86805 * 120.00143 * 191.02202 * 21 19 18 24 24 H 1.48502 * 109.46973 * 89.99798 * 23 21 19 25 25 H 1.48497 * 109.47558 * 210.00334 * 23 21 19 26 26 H 1.48504 * 109.46818 * 330.00328 * 23 21 19 27 27 C 1.47202 * 118.55643 * 53.53359 * 18 17 16 28 28 C 1.53037 * 109.45994 * 60.06892 * 15 2 1 29 29 H 1.09006 * 109.46810 * 269.41207 * 1 2 3 30 30 H 1.08994 * 109.47155 * 29.41099 * 1 2 3 31 31 H 1.09002 * 109.46816 * 149.41578 * 1 2 3 32 32 H 1.08002 * 119.23132 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.09257 * 0.02562 * 9 8 7 34 34 H 1.07995 * 119.45670 * 180.02562 * 10 9 8 35 35 H 1.07997 * 119.58373 * 180.02562 * 11 10 9 36 36 H 1.07993 * 120.19377 * 179.97438 * 12 11 10 37 37 H 1.07993 * 121.01938 * 0.02562 * 14 5 3 38 38 H 1.08997 * 109.45135 * 180.02562 * 15 2 1 39 39 H 1.09002 * 109.50148 * 61.43582 * 16 15 2 40 40 H 1.09000 * 109.50254 * 301.33650 * 16 15 2 41 41 H 1.09001 * 109.58312 * 65.15097 * 17 16 15 42 42 H 1.08991 * 109.58689 * 185.43485 * 17 16 15 43 43 H 0.96995 * 120.00231 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.53129 * 186.67795 * 27 18 17 45 45 H 1.08996 * 109.68052 * 66.37257 * 27 18 17 46 46 H 1.09005 * 109.49534 * 298.56558 * 28 15 2 47 47 H 1.08998 * 109.49594 * 58.66294 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3502 1.1698 -0.1026 5 6 1.4053 2.4438 0.1246 6 6 1.9026 3.6093 -0.4846 7 7 1.2713 4.7512 -0.3941 8 6 0.1272 4.8704 0.2898 9 6 -0.5323 6.1081 0.3792 10 6 -1.6949 6.2064 1.0806 11 6 -2.2474 5.0965 1.7167 12 6 -1.6383 3.8806 1.6531 13 6 -0.4366 3.7424 0.9376 14 6 0.2208 2.5034 0.8498 15 6 2.1976 -1.2687 0.0006 16 6 1.8277 -2.0704 1.2506 17 6 2.6213 -3.3807 1.2654 18 7 2.3856 -4.0940 0.0027 19 6 1.9520 -5.3929 0.0056 20 1 1.3334 -5.7539 0.8140 21 6 2.3074 -6.2455 -1.0304 22 7 3.2290 -5.8805 -1.8964 23 14 1.4779 -7.9111 -1.1957 24 1 0.2701 -7.7800 -2.0496 25 1 2.4215 -8.8746 -1.8174 26 1 1.0827 -8.4028 0.1487 27 6 2.6227 -3.3810 -1.2631 28 6 1.8290 -2.0708 -1.2496 29 1 -0.3633 -0.0105 1.0277 30 1 -0.3633 0.8952 -0.5046 31 1 -0.3633 -0.8847 -0.5229 32 1 2.8257 3.5598 -1.0431 33 1 -0.1181 6.9788 -0.1073 34 1 -2.1971 7.1603 1.1452 35 1 -3.1711 5.2020 2.2663 36 1 -2.0755 3.0275 2.1503 37 1 -0.1814 1.6247 1.3319 38 1 3.2691 -1.0691 0.0009 39 1 0.7604 -2.2917 1.2383 40 1 2.0689 -1.4889 2.1404 41 1 3.6843 -3.1628 1.3690 42 1 2.2917 -3.9981 2.1009 43 1 3.4771 -6.4762 -2.6206 44 1 2.2922 -3.9998 -2.0974 45 1 3.6855 -3.1633 -1.3683 46 1 0.7617 -2.2920 -1.2383 47 1 2.0712 -1.4895 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006056706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 55.809519 kcal Electronic energy + Delta-G solvation = -28937.785317 eV Core-core repulsion = 25086.437628 eV Total energy + Delta-G solvation = -3851.347689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34460 -39.86584 -37.67462 -36.99315 -35.39153 -33.91733 -32.44481 -31.05636 -30.57726 -30.04122 -29.45159 -27.22393 -25.52817 -24.68930 -24.14096 -22.54432 -22.20031 -22.05919 -20.10079 -18.98039 -18.55669 -17.60518 -17.19886 -16.77513 -16.34446 -15.82243 -15.44070 -14.94123 -14.81967 -14.57778 -14.50895 -14.13479 -13.80246 -13.77518 -13.55486 -13.40199 -13.07020 -12.87887 -12.63755 -12.42788 -12.17584 -12.13741 -12.06864 -11.82592 -11.52279 -11.09927 -10.86550 -10.79054 -10.76949 -10.37964 -10.27991 -10.15006 -10.08082 -9.82931 -9.71539 -9.48656 -9.13661 -8.64364 -8.59394 -8.38109 -6.68089 -5.80725 -3.28283 -0.09656 0.33590 1.52780 2.32421 2.90446 3.05023 3.35178 3.41755 3.43251 3.76301 3.92840 4.15981 4.25772 4.42775 4.45885 4.46006 4.64158 4.73261 4.86004 5.01090 5.11626 5.20535 5.29005 5.35744 5.39828 5.45024 5.46614 5.55001 5.57685 5.61400 5.71974 5.81952 5.91501 6.01258 6.03771 6.11602 6.16768 6.29198 6.42095 6.44011 6.51667 6.59889 6.73748 6.83026 6.92571 7.32309 7.41226 7.57973 7.66952 7.75849 8.13834 8.43927 9.18665 9.80248 10.38429 11.27561 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.002306 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.686282 B =12137.558654 C =12675.351253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.600 5.600 3 C 0.558 3.442 4 O -0.531 6.531 5 C -0.180 4.180 6 C 0.183 3.817 7 N -0.479 5.479 8 C 0.139 3.861 9 C -0.098 4.098 10 C -0.094 4.094 11 C -0.122 4.122 12 C -0.087 4.087 13 C -0.113 4.113 14 C -0.026 4.026 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.173 3.827 28 C -0.146 4.146 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.021 0.979 46 H 0.057 0.943 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 22.114 6.090 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C 0.345 3.655 4 O -0.409 6.409 5 C -0.185 4.185 6 C 0.010 3.990 7 N -0.186 5.186 8 C 0.018 3.982 9 C -0.117 4.117 10 C -0.114 4.114 11 C -0.140 4.140 12 C -0.106 4.106 13 C -0.115 4.115 14 C -0.052 4.052 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.046 3.954 28 C -0.186 4.186 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.187 0.813 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.040 0.960 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.117 22.790 5.517 25.950 hybrid contribution -0.860 -1.597 0.275 1.835 sum -11.977 21.193 5.792 25.023 Atomic orbital electron populations 1.22122 0.80394 1.03660 1.01253 1.48071 1.06844 1.06287 1.71921 1.18075 0.87069 0.83152 0.77163 1.90802 1.13411 1.86923 1.49714 1.21061 0.97361 0.96389 1.03699 1.23065 0.97504 0.85740 0.92732 1.68064 1.07514 1.26096 1.16917 1.19067 0.91735 0.93459 0.93924 1.20843 0.95158 0.96124 0.99544 1.20984 0.95260 0.99129 0.96028 1.20947 1.00431 0.92693 0.99891 1.21065 0.93647 0.98432 0.97444 1.18820 0.97441 0.94051 1.01154 1.22523 0.91885 0.97412 0.93391 1.21278 0.97315 0.80464 0.96580 1.22383 1.01444 0.98119 0.95844 1.20868 0.95833 0.90810 0.90471 1.44118 1.77845 1.10227 0.99361 1.19172 1.24470 0.86115 1.08447 0.91711 1.25158 0.96995 0.97777 0.99623 1.69965 1.30775 1.36798 1.17332 0.86249 0.78636 0.83765 0.77830 1.21454 1.21672 1.20435 1.20846 0.95334 0.88506 0.90678 1.22577 1.01591 0.99079 0.95340 0.92440 0.91167 0.89953 0.81285 0.84545 0.85147 0.85291 0.84906 0.82681 0.88445 0.92069 0.92968 0.96158 0.92440 0.93520 0.88810 0.96049 0.92413 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 7.88 59.85 0.47 1.20 16 2 N -0.60 -8.55 2.76 -175.04 -0.48 -9.03 16 3 C 0.56 8.44 7.42 -12.37 -0.09 8.35 16 4 O -0.53 -9.92 16.07 5.30 0.09 -9.83 16 5 C -0.18 -2.23 5.31 -104.83 -0.56 -2.79 16 6 C 0.18 2.29 10.73 -17.10 -0.18 2.10 16 7 N -0.48 -5.99 10.30 -10.67 -0.11 -6.10 16 8 C 0.14 1.55 6.61 -84.79 -0.56 0.99 16 9 C -0.10 -0.85 9.97 -39.48 -0.39 -1.25 16 10 C -0.09 -0.61 9.94 -39.93 -0.40 -1.01 16 11 C -0.12 -0.76 9.96 -39.92 -0.40 -1.15 16 12 C -0.09 -0.63 9.77 -39.47 -0.39 -1.02 16 13 C -0.11 -1.11 5.74 -106.81 -0.61 -1.72 16 14 C -0.03 -0.26 7.49 -38.43 -0.29 -0.55 16 15 C 0.15 2.49 2.48 -67.89 -0.17 2.32 16 16 C -0.14 -2.31 5.34 -26.61 -0.14 -2.45 16 17 C 0.15 3.02 6.51 -3.71 -0.02 3.00 16 18 N -0.59 -14.49 3.00 -172.09 -0.52 -15.01 16 19 C -0.25 -6.75 9.60 -15.06 -0.14 -6.89 16 20 H 0.07 1.70 7.85 -52.48 -0.41 1.28 16 21 C 0.00 0.08 5.06 -17.43 -0.09 0.00 16 22 N -0.90 -25.92 11.00 55.49 0.61 -25.31 16 23 Si 0.91 21.32 29.57 -169.99 -5.03 16.29 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.17 4.06 5.28 -3.56 -0.02 4.04 16 28 C -0.15 -2.73 5.31 -26.61 -0.14 -2.87 16 29 H 0.06 0.49 6.74 -51.93 -0.35 0.14 16 30 H 0.07 0.64 5.91 -51.93 -0.31 0.34 16 31 H 0.08 0.91 6.46 -51.93 -0.34 0.58 16 32 H 0.17 1.98 7.92 -52.49 -0.42 1.57 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.16 1.24 5.03 -52.49 -0.26 0.97 16 38 H 0.10 1.92 6.91 -51.93 -0.36 1.56 16 39 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.09 2.47 6.05 -51.93 -0.31 2.15 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.05 6.73 -51.93 -0.35 0.70 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.27 372.79 -10.38 -42.65 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.44 Total: 0.43 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -4.12 Total: 0.29 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.50 Total: -55.45 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.27 -10.38 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006056706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.461 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds