Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 120.00038 * 2 1 4 4 O 1.21541 * 119.99793 * 185.01577 * 3 2 1 5 5 C 1.47888 * 119.99846 * 5.01752 * 3 2 1 6 6 C 1.40578 * 119.70016 * 140.41092 * 5 3 2 7 7 C 1.35822 * 120.72951 * 180.24529 * 6 5 3 8 8 C 1.40546 * 119.98221 * 0.05814 * 7 6 5 9 9 C 1.40822 * 121.12903 * 179.97438 * 8 7 6 10 10 C 1.36556 * 118.19444 * 179.97438 * 9 8 7 11 11 C 1.39415 * 119.94442 * 0.02562 * 10 9 8 12 12 N 1.31026 * 121.70914 * 359.97438 * 11 10 9 13 13 C 1.33749 * 121.35156 * 359.97438 * 12 11 10 14 14 C 1.38405 * 119.70720 * 320.68698 * 5 3 2 15 15 C 1.46496 * 119.99740 * 180.02562 * 2 1 3 16 16 C 1.53042 * 109.46261 * 60.06881 * 15 2 1 17 17 C 1.53188 * 109.31507 * 178.61310 * 16 15 2 18 18 N 1.46932 * 108.77573 * 54.63192 * 17 16 15 19 19 C 1.36939 * 120.62588 * 126.41166 * 18 17 16 20 20 H 1.08001 * 120.00361 * 327.23468 * 19 18 17 21 21 C 1.38813 * 119.99563 * 147.23415 * 19 18 17 22 22 N 1.31625 * 119.99983 * 345.66867 * 21 19 18 23 23 Si 1.86799 * 119.99993 * 165.66841 * 21 19 18 24 24 H 1.48494 * 109.47288 * 90.00118 * 23 21 19 25 25 H 1.48500 * 109.47200 * 210.00415 * 23 21 19 26 26 H 1.48500 * 109.46831 * 329.99792 * 23 21 19 27 27 C 1.46924 * 118.74054 * 306.39319 * 18 17 16 28 28 C 1.53042 * 109.46056 * 299.99943 * 15 2 1 29 29 H 1.08993 * 109.47255 * 84.26120 * 1 2 3 30 30 H 1.08996 * 109.47440 * 204.26382 * 1 2 3 31 31 H 1.09003 * 109.46872 * 324.26296 * 1 2 3 32 32 H 1.07994 * 119.63386 * 0.25642 * 6 5 3 33 33 H 1.07993 * 120.00307 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.90561 * 359.95371 * 9 8 7 35 35 H 1.08007 * 120.02880 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.14757 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.23565 * 359.69978 * 14 5 3 38 38 H 1.09003 * 109.45682 * 180.02562 * 15 2 1 39 39 H 1.09003 * 109.49513 * 298.56325 * 16 15 2 40 40 H 1.08996 * 109.49588 * 58.65963 * 16 15 2 41 41 H 1.09002 * 109.58819 * 294.84787 * 17 16 15 42 42 H 1.08992 * 109.70625 * 174.48987 * 17 16 15 43 43 H 0.97001 * 119.99922 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.58644 * 293.82003 * 27 18 17 45 45 H 1.08996 * 109.70269 * 173.46128 * 27 18 17 46 46 H 1.09002 * 109.49671 * 301.33515 * 28 15 2 47 47 H 1.08994 * 109.50042 * 61.40510 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1691 -0.0920 5 6 1.4037 2.4455 0.1120 6 6 1.9298 3.4849 0.8988 7 6 1.2696 4.6657 1.0203 8 6 0.0460 4.8578 0.3562 9 6 -0.6590 6.0719 0.4658 10 6 -1.8420 6.1938 -0.2054 11 6 -2.3200 5.1319 -0.9718 12 7 -1.6615 4.0035 -1.0717 13 6 -0.4967 3.8193 -0.4407 14 6 0.2011 2.6057 -0.5541 15 6 2.1975 -1.2687 -0.0006 16 6 1.8289 -2.0698 -1.2514 17 6 2.6225 -3.3800 -1.2662 18 7 2.3849 -4.0910 -0.0025 19 6 1.9518 -5.3901 -0.0038 20 1 1.3013 -5.7418 -0.7909 21 6 2.3489 -6.2550 1.0068 22 7 3.3481 -5.9274 1.7985 23 14 1.4653 -7.8838 1.2430 24 1 2.1300 -8.9305 0.4259 25 1 1.5133 -8.2697 2.6761 26 1 0.0501 -7.7458 0.8147 27 6 2.6212 -3.3819 1.2624 28 6 1.8276 -2.0716 1.2487 29 1 -0.3633 0.1028 -1.0224 30 1 -0.3634 -0.9368 0.4223 31 1 -0.3633 0.8342 0.6002 32 1 2.8693 3.3430 1.4122 33 1 1.6847 5.4564 1.6275 34 1 -0.2748 6.8843 1.0646 35 1 -2.4074 7.1119 -0.1418 36 1 -3.2572 5.2422 -1.4969 37 1 -0.1975 1.8035 -1.1572 38 1 3.2691 -1.0693 0.0000 39 1 0.7616 -2.2910 -1.2403 40 1 2.0710 -1.4877 -2.1406 41 1 3.6856 -3.1622 -1.3686 42 1 2.2943 -3.9990 -2.1010 43 1 3.6253 -6.5316 2.5049 44 1 3.6842 -3.1642 1.3662 45 1 2.2916 -4.0000 2.0974 46 1 2.0689 -1.4908 2.1391 47 1 0.7603 -2.2923 1.2366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006160629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 54.427441 kcal Electronic energy + Delta-G solvation = -28917.324981 eV Core-core repulsion = 25065.917360 eV Total energy + Delta-G solvation = -3851.407620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28616 -39.98950 -37.68887 -36.78928 -35.24907 -33.89856 -32.53261 -31.06756 -30.59474 -30.00593 -29.40061 -27.08192 -25.61966 -24.66023 -24.05952 -22.49916 -22.20227 -22.09642 -20.14152 -18.93391 -18.26981 -17.50983 -17.33441 -16.76618 -16.33790 -15.82774 -15.35050 -14.96444 -14.83459 -14.63299 -14.42461 -14.01313 -13.83005 -13.61176 -13.45173 -13.40538 -13.06342 -12.96478 -12.63032 -12.53901 -12.31073 -12.03809 -11.90111 -11.70122 -11.45694 -11.13175 -10.88591 -10.83130 -10.72555 -10.35036 -10.21486 -10.11930 -9.94043 -9.84091 -9.72641 -9.49788 -9.12119 -8.60200 -8.54623 -8.34536 -6.61773 -5.79851 -3.27274 -0.06237 0.35197 1.55703 2.28589 2.92109 3.11719 3.36861 3.43743 3.45656 3.74157 3.88966 4.17664 4.31181 4.42850 4.48641 4.49814 4.67850 4.73795 4.93616 5.07459 5.14432 5.30306 5.31816 5.40883 5.41504 5.47506 5.51095 5.55896 5.62929 5.69172 5.74756 5.86867 5.92700 6.03094 6.08216 6.11456 6.21547 6.32710 6.40980 6.49299 6.55623 6.62000 6.78832 6.87853 6.97587 7.30977 7.47358 7.52488 7.62693 7.80024 8.19285 8.47305 9.21047 9.82723 10.42658 11.28940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.002309 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.003793 B =12122.914294 C =12571.180328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.598 5.598 3 C 0.553 3.447 4 O -0.533 6.533 5 C -0.100 4.100 6 C -0.069 4.069 7 C -0.103 4.103 8 C -0.090 4.090 9 C -0.060 4.060 10 C -0.172 4.172 11 C 0.129 3.871 12 N -0.467 5.467 13 C 0.118 3.882 14 C -0.063 4.063 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.177 3.823 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.254 0.746 44 H 0.022 0.978 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 25.524 -1.885 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.329 5.329 3 C 0.340 3.660 4 O -0.411 6.411 5 C -0.105 4.105 6 C -0.088 4.088 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.086 4.086 10 C -0.192 4.192 11 C -0.045 4.045 12 N -0.175 5.175 13 C -0.003 4.003 14 C -0.082 4.082 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.051 3.949 28 C -0.186 4.186 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.108 24.602 -2.285 26.695 hybrid contribution -0.246 -0.034 0.711 0.753 sum -10.354 24.567 -1.574 26.707 Atomic orbital electron populations 1.22122 0.80058 1.03831 1.01403 1.48098 1.07034 1.06216 1.71594 1.18286 0.87119 0.83452 0.77140 1.90789 1.13426 1.86987 1.49864 1.20032 0.95137 0.95433 0.99900 1.20898 0.99694 0.91668 0.96525 1.20886 0.93832 0.97842 0.99627 1.18959 0.96453 0.95005 0.98837 1.21515 0.94098 0.96088 0.96902 1.21952 0.97410 1.00865 0.98950 1.23006 0.98681 0.88086 0.94721 1.68035 1.06353 1.23611 1.19493 1.18742 0.92297 0.93793 0.95424 1.21684 0.92370 0.96278 0.97875 1.21262 0.97288 0.80549 0.96539 1.22371 1.01442 0.98050 0.95908 1.20880 0.95802 0.90826 0.90430 1.44027 1.77893 1.10188 0.99289 1.19114 1.22700 0.85976 1.10807 0.91905 1.25192 0.96296 0.97604 1.00198 1.70016 1.26156 1.37159 1.21096 0.86313 0.79539 0.83884 0.77096 1.21306 1.21571 1.20436 1.20681 0.95358 0.88530 0.90343 1.22589 1.01699 0.99003 0.95333 0.92234 0.89955 0.91155 0.84436 0.84614 0.84234 0.84396 0.82217 0.83099 0.88512 0.92030 0.92873 0.96185 0.92388 0.93564 0.95992 0.89776 0.93037 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 7.93 59.85 0.47 1.30 16 2 N -0.60 -9.08 2.76 -174.98 -0.48 -9.57 16 3 C 0.55 8.75 7.33 -12.31 -0.09 8.66 16 4 O -0.53 -10.29 16.24 5.33 0.09 -10.20 16 5 C -0.10 -1.28 5.25 -105.00 -0.55 -1.83 16 6 C -0.07 -0.77 9.52 -39.57 -0.38 -1.14 16 7 C -0.10 -0.92 9.74 -39.58 -0.39 -1.30 16 8 C -0.09 -0.86 5.75 -106.73 -0.61 -1.48 16 9 C -0.06 -0.41 9.89 -39.21 -0.39 -0.80 16 10 C -0.17 -1.02 10.03 -39.75 -0.40 -1.42 16 11 C 0.13 0.97 11.15 -17.46 -0.19 0.77 16 12 N -0.47 -5.03 10.34 -10.98 -0.11 -5.14 16 13 C 0.12 1.33 6.60 -84.87 -0.56 0.77 16 14 C -0.06 -0.74 7.53 -38.69 -0.29 -1.03 16 15 C 0.15 2.59 2.47 -67.89 -0.17 2.43 16 16 C -0.14 -2.44 5.34 -26.61 -0.14 -2.58 16 17 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 18 N -0.59 -14.74 2.97 -172.32 -0.51 -15.25 16 19 C -0.26 -6.97 9.54 -15.06 -0.14 -7.12 16 20 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 21 C 0.01 0.18 4.95 -17.43 -0.09 0.09 16 22 N -0.90 -26.14 11.39 55.49 0.63 -25.51 16 23 Si 0.90 21.52 29.58 -169.99 -5.03 16.50 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.18 4.22 5.26 -3.71 -0.02 4.20 16 28 C -0.15 -2.79 5.32 -26.61 -0.14 -2.93 16 29 H 0.06 0.63 6.80 -51.93 -0.35 0.28 16 30 H 0.08 1.01 6.47 -51.93 -0.34 0.68 16 31 H 0.07 0.76 5.91 -51.93 -0.31 0.45 16 32 H 0.14 1.46 8.04 -52.49 -0.42 1.04 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 36 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.15 1.67 5.23 -52.49 -0.27 1.39 16 38 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 39 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 2.21 6.35 -51.93 -0.33 1.88 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -33.13 373.75 -10.36 -43.49 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.47 Total: 0.36 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -4.10 Total: -0.31 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.48 Total: -55.47 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.13 -10.36 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006160629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.915 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds