Wall clock time and date at job start Sat Apr 11 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34775 * 120.00038 * 2 1 4 4 O 1.21541 * 119.99793 * 185.01577 * 3 2 1 5 5 C 1.47888 * 119.99846 * 5.01752 * 3 2 1 6 6 C 1.40578 * 119.70016 * 140.41092 * 5 3 2 7 7 C 1.35822 * 120.72951 * 180.24529 * 6 5 3 8 8 C 1.40546 * 119.98221 * 0.05814 * 7 6 5 9 9 C 1.40822 * 121.12903 * 179.97438 * 8 7 6 10 10 C 1.36556 * 118.19444 * 179.97438 * 9 8 7 11 11 C 1.39415 * 119.94442 * 0.02562 * 10 9 8 12 12 N 1.31026 * 121.70914 * 359.97438 * 11 10 9 13 13 C 1.33749 * 121.35156 * 359.97438 * 12 11 10 14 14 C 1.38405 * 119.70720 * 320.68698 * 5 3 2 15 15 C 1.46496 * 119.99740 * 180.02562 * 2 1 3 16 16 C 1.53042 * 109.46261 * 60.06881 * 15 2 1 17 17 C 1.53188 * 109.31507 * 178.61310 * 16 15 2 18 18 N 1.46932 * 108.77573 * 54.63192 * 17 16 15 19 19 C 1.36939 * 120.62588 * 126.41166 * 18 17 16 20 20 H 1.08001 * 120.00361 * 327.23468 * 19 18 17 21 21 C 1.38813 * 119.99563 * 147.23415 * 19 18 17 22 22 N 1.31625 * 119.99983 * 345.66867 * 21 19 18 23 23 Si 1.86799 * 119.99993 * 165.66841 * 21 19 18 24 24 H 1.48494 * 109.47288 * 90.00118 * 23 21 19 25 25 H 1.48500 * 109.47200 * 210.00415 * 23 21 19 26 26 H 1.48500 * 109.46831 * 329.99792 * 23 21 19 27 27 C 1.46924 * 118.74054 * 306.39319 * 18 17 16 28 28 C 1.53042 * 109.46056 * 299.99943 * 15 2 1 29 29 H 1.08993 * 109.47255 * 84.26120 * 1 2 3 30 30 H 1.08996 * 109.47440 * 204.26382 * 1 2 3 31 31 H 1.09003 * 109.46872 * 324.26296 * 1 2 3 32 32 H 1.07994 * 119.63386 * 0.25642 * 6 5 3 33 33 H 1.07993 * 120.00307 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.90561 * 359.95371 * 9 8 7 35 35 H 1.08007 * 120.02880 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.14757 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.23565 * 359.69978 * 14 5 3 38 38 H 1.09003 * 109.45682 * 180.02562 * 15 2 1 39 39 H 1.09003 * 109.49513 * 298.56325 * 16 15 2 40 40 H 1.08996 * 109.49588 * 58.65963 * 16 15 2 41 41 H 1.09002 * 109.58819 * 294.84787 * 17 16 15 42 42 H 1.08992 * 109.70625 * 174.48987 * 17 16 15 43 43 H 0.97001 * 119.99922 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.58644 * 293.82003 * 27 18 17 45 45 H 1.08996 * 109.70269 * 173.46128 * 27 18 17 46 46 H 1.09002 * 109.49671 * 301.33515 * 28 15 2 47 47 H 1.08994 * 109.50042 * 61.40510 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1691 -0.0920 5 6 1.4037 2.4455 0.1120 6 6 1.9298 3.4849 0.8988 7 6 1.2696 4.6657 1.0203 8 6 0.0460 4.8578 0.3562 9 6 -0.6590 6.0719 0.4658 10 6 -1.8420 6.1938 -0.2054 11 6 -2.3200 5.1319 -0.9718 12 7 -1.6615 4.0035 -1.0717 13 6 -0.4967 3.8193 -0.4407 14 6 0.2011 2.6057 -0.5541 15 6 2.1975 -1.2687 -0.0006 16 6 1.8289 -2.0698 -1.2514 17 6 2.6225 -3.3800 -1.2662 18 7 2.3849 -4.0910 -0.0025 19 6 1.9518 -5.3901 -0.0038 20 1 1.3013 -5.7418 -0.7909 21 6 2.3489 -6.2550 1.0068 22 7 3.3481 -5.9274 1.7985 23 14 1.4653 -7.8838 1.2430 24 1 2.1300 -8.9305 0.4259 25 1 1.5133 -8.2697 2.6761 26 1 0.0501 -7.7458 0.8147 27 6 2.6212 -3.3819 1.2624 28 6 1.8276 -2.0716 1.2487 29 1 -0.3633 0.1028 -1.0224 30 1 -0.3634 -0.9368 0.4223 31 1 -0.3633 0.8342 0.6002 32 1 2.8693 3.3430 1.4122 33 1 1.6847 5.4564 1.6275 34 1 -0.2748 6.8843 1.0646 35 1 -2.4074 7.1119 -0.1418 36 1 -3.2572 5.2422 -1.4969 37 1 -0.1975 1.8035 -1.1572 38 1 3.2691 -1.0693 0.0000 39 1 0.7616 -2.2910 -1.2403 40 1 2.0710 -1.4877 -2.1406 41 1 3.6856 -3.1622 -1.3686 42 1 2.2943 -3.9990 -2.1010 43 1 3.6253 -6.5316 2.5049 44 1 3.6842 -3.1642 1.3662 45 1 2.2916 -4.0000 2.0974 46 1 2.0689 -1.4908 2.1391 47 1 0.7603 -2.2923 1.2366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006160629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:20 Heat of formation + Delta-G solvation = 35.008271 kcal Electronic energy + Delta-G solvation = -28918.167059 eV Core-core repulsion = 25065.917360 eV Total energy + Delta-G solvation = -3852.249699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08339 -41.09442 -39.15959 -37.71641 -36.72048 -34.76235 -34.12411 -32.27449 -31.67897 -31.41074 -30.75450 -28.18936 -27.18045 -25.72734 -24.90462 -23.91810 -23.61763 -23.17557 -21.42406 -20.48959 -19.17562 -18.67735 -18.34785 -18.07727 -17.42186 -17.00707 -16.70288 -16.36205 -15.75324 -15.66434 -15.40341 -15.34427 -15.18806 -14.83480 -14.81192 -14.39705 -14.27362 -14.18948 -14.02590 -13.87986 -13.35732 -13.23149 -13.03443 -12.82071 -12.66720 -12.65885 -12.54668 -12.47413 -12.11226 -12.01077 -11.93257 -11.56941 -11.49215 -11.37299 -11.00978 -10.58874 -10.46287 -9.87579 -9.67776 -9.30831 -8.66507 -7.89195 -5.40605 -0.74919 -0.33757 0.88747 1.40163 1.47476 1.48310 1.58478 1.79202 2.10309 2.50462 3.05270 3.13352 3.27720 3.48025 3.55514 3.63497 3.81408 3.84652 3.97290 4.00676 4.04005 4.06374 4.16030 4.27357 4.31850 4.42406 4.48100 4.58773 4.62089 4.64653 4.71115 4.80598 4.85981 4.87285 4.89987 4.99417 5.02725 5.10355 5.11138 5.19405 5.27014 5.33361 5.40548 5.47724 5.51502 5.62597 5.65786 5.78576 6.27308 6.39660 6.91338 6.96908 7.13127 7.80915 8.37187 9.18002 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.002309 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.003793 B =12122.914294 C =12571.180328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.596 5.596 3 C 0.551 3.449 4 O -0.578 6.578 5 C -0.115 4.115 6 C -0.094 4.094 7 C -0.085 4.085 8 C -0.104 4.104 9 C -0.060 4.060 10 C -0.162 4.162 11 C 0.128 3.872 12 N -0.503 5.503 13 C 0.097 3.903 14 C -0.064 4.064 15 C 0.154 3.846 16 C -0.121 4.121 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.186 3.814 28 C -0.128 4.128 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.189 0.811 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.007 0.993 42 H 0.064 0.936 43 H 0.251 0.749 44 H -0.008 1.008 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 28.557 -2.287 31.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.341 3.659 4 O -0.459 6.459 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.106 4.106 9 C -0.086 4.086 10 C -0.181 4.181 11 C -0.045 4.045 12 N -0.211 5.211 13 C -0.023 4.023 14 C -0.083 4.083 15 C 0.051 3.949 16 C -0.161 4.161 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.395 4.395 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.191 1.191 27 C 0.059 3.941 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.150 0.850 33 H 0.187 0.813 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.206 0.794 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.010 0.990 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.354 27.658 -2.710 30.832 hybrid contribution 0.655 -0.789 0.773 1.284 sum -12.700 26.869 -1.937 29.782 Atomic orbital electron populations 1.22315 0.77742 1.04379 1.02923 1.48015 1.08289 1.05035 1.71311 1.18809 0.86742 0.84490 0.75897 1.90754 1.15484 1.87710 1.51968 1.19766 0.95841 0.94317 1.02084 1.20941 1.00223 0.92496 0.97569 1.21208 0.93100 0.97442 0.98558 1.19259 0.96859 0.95890 0.98596 1.21952 0.94020 0.95672 0.96921 1.22398 0.97050 1.01599 0.97067 1.23679 0.99140 0.87529 0.94142 1.68035 1.06749 1.25546 1.20792 1.18858 0.92934 0.94090 0.96415 1.21642 0.91982 0.97004 0.97699 1.20873 0.96179 0.81807 0.95995 1.22164 1.01376 0.96117 0.96440 1.20998 0.95713 0.92351 0.89134 1.44276 1.78053 1.10155 1.00608 1.19475 1.22365 0.86944 1.10750 0.91384 1.25994 0.97083 1.01109 1.00210 1.70184 1.27835 1.38374 1.21760 0.85245 0.78838 0.79608 0.76540 1.21138 1.21940 1.19117 1.20436 0.94199 0.90136 0.89319 1.22312 1.01326 0.96689 0.96468 0.90404 0.89968 0.89792 0.84978 0.81273 0.80862 0.80531 0.79406 0.83128 0.91355 0.90747 0.91177 0.97530 0.91739 0.94034 0.99029 0.92663 0.92333 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 7.93 127.77 1.01 2.56 16 2 N -0.60 -18.19 2.76 -825.81 -2.28 -20.47 16 3 C 0.55 18.00 7.33 86.80 0.64 18.64 16 4 O -0.58 -23.54 16.24 -3.85 -0.06 -23.60 16 5 C -0.12 -2.98 5.25 -20.11 -0.11 -3.09 16 6 C -0.09 -2.06 9.52 22.28 0.21 -1.85 16 7 C -0.08 -1.33 9.74 22.27 0.22 -1.12 16 8 C -0.10 -1.72 5.75 -21.23 -0.12 -1.84 16 9 C -0.06 -0.56 9.89 22.51 0.22 -0.33 16 10 C -0.16 -1.16 10.03 22.16 0.22 -0.94 16 11 C 0.13 1.48 11.15 85.10 0.95 2.43 16 12 N -0.50 -9.80 10.34 -188.66 -1.95 -11.75 16 13 C 0.10 2.04 6.60 40.25 0.27 2.30 16 14 C -0.06 -1.47 7.53 22.85 0.17 -1.30 16 15 C 0.15 5.64 2.47 45.02 0.11 5.75 16 16 C -0.12 -4.25 5.34 30.67 0.16 -4.09 16 17 C 0.14 6.22 6.52 86.36 0.56 6.78 16 18 N -0.61 -31.10 2.97 -699.09 -2.08 -33.18 16 19 C -0.27 -14.62 9.54 84.03 0.80 -13.82 16 20 H 0.07 3.62 7.87 -2.91 -0.02 3.60 16 21 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 22 N -0.94 -56.32 11.39 21.65 0.25 -56.07 16 23 Si 0.97 44.84 29.58 68.60 2.03 46.87 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 C 0.19 9.25 5.26 86.37 0.45 9.70 16 28 C -0.13 -4.99 5.32 30.67 0.16 -4.83 16 29 H 0.08 1.52 6.80 -2.39 -0.02 1.50 16 30 H 0.08 1.89 6.47 -2.39 -0.02 1.88 16 31 H 0.08 1.72 5.91 -2.39 -0.01 1.71 16 32 H 0.13 2.93 8.04 -2.91 -0.02 2.91 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.15 3.25 5.23 -2.91 -0.02 3.24 16 38 H 0.07 2.92 6.91 -2.39 -0.02 2.90 16 39 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.05 3.05 6.35 -2.39 -0.02 3.04 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.07 2.60 6.72 -2.39 -0.02 2.59 16 Total: -1.00 -75.98 373.75 3.25 -72.73 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.99 Total: 12.79 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.36 Total: 12.68 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -6.06 Total: -121.47 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.98 3.25 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006160629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.736 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds