Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34786 * 120.00027 * 2 1 4 4 O 1.21582 * 119.99800 * 184.60923 * 3 2 1 5 5 C 1.47566 * 119.99412 * 4.61284 * 3 2 1 6 6 C 1.38698 * 120.43768 * 310.55224 * 5 3 2 7 7 C 1.39001 * 120.75101 * 180.02562 * 6 5 3 8 8 C 1.36350 * 121.19254 * 359.97438 * 7 6 5 9 9 C 1.40343 * 119.92611 * 0.02562 * 8 7 6 10 10 C 1.40691 * 122.10378 * 179.97438 * 9 8 7 11 11 C 1.36261 * 118.66893 * 180.02562 * 10 9 8 12 12 N 1.32511 * 121.83718 * 359.97438 * 11 10 9 13 13 C 1.31312 * 122.72869 * 0.02562 * 12 11 10 14 14 C 1.40142 * 119.90900 * 0.02562 * 13 12 11 15 15 C 1.46502 * 120.00500 * 179.97438 * 2 1 3 16 16 C 1.53039 * 109.45583 * 60.03058 * 15 2 1 17 17 C 1.53196 * 109.31216 * 178.60877 * 16 15 2 18 18 N 1.46921 * 108.76903 * 54.65121 * 17 16 15 19 19 C 1.36930 * 120.62987 * 126.40858 * 18 17 16 20 20 H 1.07998 * 120.00339 * 322.50007 * 19 18 17 21 21 C 1.38818 * 119.99845 * 142.49871 * 19 18 17 22 22 N 1.31610 * 120.00206 * 358.75850 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 178.75865 * 21 19 18 24 24 H 1.48502 * 109.47099 * 59.99782 * 23 21 19 25 25 H 1.48499 * 109.47181 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46974 * 300.00026 * 23 21 19 27 27 C 1.46931 * 118.74008 * 306.38678 * 18 17 16 28 28 C 1.53038 * 109.45975 * 299.97918 * 15 2 1 29 29 H 1.09006 * 109.47001 * 93.05932 * 1 2 3 30 30 H 1.08997 * 109.47356 * 213.05588 * 1 2 3 31 31 H 1.09000 * 109.47660 * 333.05920 * 1 2 3 32 32 H 1.07997 * 119.62392 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.40182 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.03126 * 180.27685 * 8 7 6 35 35 H 1.07998 * 120.66589 * 0.02661 * 10 9 8 36 36 H 1.07994 * 119.08169 * 179.97438 * 11 10 9 37 37 H 1.07991 * 120.04710 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46254 * 180.02562 * 15 2 1 39 39 H 1.09003 * 109.50123 * 298.56558 * 16 15 2 40 40 H 1.08993 * 109.49894 * 58.66596 * 16 15 2 41 41 H 1.09010 * 109.59145 * 294.86554 * 17 16 15 42 42 H 1.09004 * 109.70440 * 174.50793 * 17 16 15 43 43 H 0.97000 * 120.00684 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58642 * 293.82397 * 27 18 17 45 45 H 1.08998 * 109.70493 * 173.46573 * 27 18 17 46 46 H 1.09007 * 109.49783 * 301.33597 * 28 15 2 47 47 H 1.09000 * 109.50021 * 61.39678 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1689 -0.0846 5 6 1.4045 2.4431 0.1028 6 6 0.3194 2.6977 -0.7227 7 6 -0.3767 3.8974 -0.6318 8 6 -0.0163 4.8565 0.2679 9 6 1.0757 4.6400 1.1224 10 6 1.4875 5.5980 2.0669 11 6 2.5578 5.3149 2.8612 12 7 3.2146 4.1679 2.7664 13 6 2.8854 3.2300 1.9083 14 6 1.7990 3.4235 1.0444 15 6 2.1976 -1.2687 0.0006 16 6 1.8282 -2.0711 -1.2491 17 6 2.6221 -3.3813 -1.2629 18 7 2.3850 -4.0910 0.0015 19 6 1.9520 -5.3900 0.0019 20 1 1.2413 -5.7226 -0.7402 21 6 2.4266 -6.2795 0.9562 22 7 3.3111 -5.8807 1.8454 23 14 1.8098 -8.0426 0.9782 24 1 2.1343 -8.6967 -0.3149 25 1 2.4664 -8.7830 2.0854 26 1 0.3387 -8.0498 1.1811 27 6 2.6218 -3.3804 1.2656 28 6 1.8281 -2.0702 1.2508 29 1 -0.3633 -0.0548 -1.0263 30 1 -0.3634 -0.8613 0.5605 31 1 -0.3634 0.9161 0.4656 32 1 0.0118 1.9554 -1.4443 33 1 -1.2182 4.0730 -1.2856 34 1 -0.5732 5.7801 0.3255 35 1 0.9657 6.5389 2.1605 36 1 2.8799 6.0456 3.5882 37 1 3.4514 2.3113 1.8679 38 1 3.2691 -1.0693 0.0009 39 1 0.7610 -2.2924 -1.2372 40 1 2.0699 -1.4902 -2.1391 41 1 3.6852 -3.1635 -1.3659 42 1 2.2936 -4.0013 -2.0971 43 1 3.6425 -6.5021 2.5124 44 1 3.6847 -3.1626 1.3688 45 1 2.2925 -3.9977 2.1015 46 1 2.0696 -1.4885 2.1405 47 1 0.7608 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006233214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = 49.786286 kcal Electronic energy + Delta-G solvation = -29330.659193 eV Core-core repulsion = 25479.050317 eV Total energy + Delta-G solvation = -3851.608876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35683 -39.79585 -37.66903 -37.24825 -35.17470 -33.37888 -32.38495 -31.52180 -30.49593 -29.92023 -29.33671 -27.03842 -25.48928 -24.56566 -23.81801 -23.50873 -22.17891 -21.73505 -19.70910 -18.93480 -18.35230 -17.52748 -17.10814 -16.82202 -16.44670 -16.02302 -15.30830 -14.96198 -14.75611 -14.60362 -14.39319 -14.01558 -13.92967 -13.62084 -13.54130 -13.29304 -13.01656 -12.69346 -12.66636 -12.48079 -12.41267 -12.28094 -12.00962 -11.74887 -11.49836 -11.02330 -10.86416 -10.79460 -10.47274 -10.31679 -10.23643 -10.11591 -9.89856 -9.78929 -9.66382 -9.53856 -9.44095 -8.55057 -8.39948 -8.33219 -6.54583 -5.81238 -3.35758 -0.10283 0.58452 1.42408 2.51405 2.79266 3.06189 3.36434 3.42069 3.42422 3.79677 4.13242 4.22756 4.35959 4.46033 4.46424 4.51780 4.63963 4.76839 4.97542 5.07624 5.21988 5.30628 5.36830 5.37890 5.40223 5.43099 5.51441 5.61525 5.62398 5.68420 5.71510 5.84667 5.88361 6.00298 6.07296 6.18721 6.30334 6.32468 6.44485 6.47434 6.54692 6.62609 6.77875 6.85383 6.96494 7.34950 7.44027 7.70048 7.77323 7.77742 8.12552 8.50619 9.22343 9.80448 10.42630 11.26908 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.002568 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.417463 B =10902.385442 C =11514.225422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.596 5.596 3 C 0.552 3.448 4 O -0.530 6.530 5 C -0.084 4.084 6 C -0.088 4.088 7 C -0.102 4.102 8 C -0.097 4.097 9 C -0.026 4.026 10 C -0.161 4.161 11 C 0.079 3.921 12 N -0.486 5.486 13 C 0.159 3.841 14 C -0.082 4.082 15 C 0.144 3.856 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.259 4.259 20 H 0.061 0.939 21 C 0.012 3.988 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.176 3.824 28 C -0.147 4.147 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.256 0.744 44 H 0.021 0.979 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 22.895 -2.780 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.340 3.660 4 O -0.408 6.408 5 C -0.090 4.090 6 C -0.107 4.107 7 C -0.121 4.121 8 C -0.115 4.115 9 C -0.032 4.032 10 C -0.181 4.181 11 C -0.065 4.065 12 N -0.194 5.194 13 C -0.011 4.011 14 C -0.084 4.084 15 C 0.043 3.957 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.389 4.389 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.050 3.950 28 C -0.187 4.187 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.188 0.812 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.497 22.751 -2.048 24.372 hybrid contribution -1.194 -0.685 -0.561 1.486 sum -9.691 22.066 -2.609 24.241 Atomic orbital electron populations 1.21991 0.80010 1.03569 1.01871 1.48121 1.07105 1.06135 1.71355 1.18198 0.87213 0.83408 0.77226 1.90814 1.13232 1.86990 1.49751 1.19980 0.96601 0.94663 0.97712 1.21502 0.93287 0.97686 0.98176 1.20917 0.99763 0.93058 0.98348 1.21105 0.95723 0.99715 0.94965 1.18115 0.95478 0.93273 0.96290 1.21891 0.99269 0.99859 0.97043 1.22297 0.92274 0.94140 0.97743 1.67552 1.29626 1.01689 1.20518 1.23512 0.91817 0.97791 0.88026 1.18760 0.97783 0.94006 0.97881 1.21288 0.97294 0.80452 0.96652 1.22364 1.01391 0.98118 0.95841 1.20893 0.95766 0.90769 0.90497 1.43966 1.77905 1.10367 0.99242 1.19052 1.19401 0.85276 1.15187 0.92101 1.25374 0.96433 0.97856 0.99110 1.69907 1.31498 1.34598 1.18518 0.86368 0.78194 0.84805 0.77297 1.20781 1.21565 1.20917 1.20768 0.95219 0.88338 0.90673 1.22617 1.01703 0.99221 0.95195 0.92405 0.90243 0.91019 0.84547 0.84802 0.84761 0.84313 0.82878 0.81166 0.88455 0.92114 0.92969 0.96187 0.92431 0.93376 0.96110 0.89153 0.93078 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.20 59.84 0.49 1.23 16 2 N -0.60 -8.56 2.76 -175.11 -0.48 -9.05 16 3 C 0.55 8.37 6.66 -12.45 -0.08 8.28 16 4 O -0.53 -9.84 14.79 5.29 0.08 -9.76 16 5 C -0.08 -1.04 4.91 -104.66 -0.51 -1.56 16 6 C -0.09 -0.81 7.60 -39.13 -0.30 -1.10 16 7 C -0.10 -0.73 9.93 -39.98 -0.40 -1.12 16 8 C -0.10 -0.73 9.79 -39.47 -0.39 -1.12 16 9 C -0.03 -0.27 5.74 -106.84 -0.61 -0.88 16 10 C -0.16 -1.42 9.88 -39.37 -0.39 -1.81 16 11 C 0.08 0.81 11.07 -17.97 -0.20 0.61 16 12 N -0.49 -6.59 10.30 -13.22 -0.14 -6.72 16 13 C 0.16 2.25 10.46 -17.06 -0.18 2.07 16 14 C -0.08 -1.04 5.76 -106.58 -0.61 -1.65 16 15 C 0.14 2.50 2.48 -67.89 -0.17 2.33 16 16 C -0.14 -2.34 5.34 -26.61 -0.14 -2.48 16 17 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 18 N -0.59 -14.57 2.97 -172.31 -0.51 -15.08 16 19 C -0.26 -6.97 9.53 -15.06 -0.14 -7.12 16 20 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 21 C 0.01 0.32 5.22 -17.43 -0.09 0.23 16 22 N -0.90 -25.87 11.02 55.49 0.61 -25.26 16 23 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.18 4.16 5.21 -3.71 -0.02 4.14 16 28 C -0.15 -2.76 5.30 -26.61 -0.14 -2.91 16 29 H 0.06 0.53 7.59 -51.93 -0.39 0.13 16 30 H 0.08 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.07 0.66 5.68 -51.93 -0.29 0.37 16 32 H 0.14 1.05 6.58 -52.49 -0.35 0.70 16 33 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.17 2.60 6.33 -52.49 -0.33 2.27 16 38 H 0.10 1.92 6.91 -51.93 -0.36 1.56 16 39 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.38 6.29 -51.93 -0.33 2.05 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -32.30 371.49 -10.26 -42.56 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.48 Total: 1.21 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.91 Total: 0.20 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.52 Total: -56.11 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.30 -10.26 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006233214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.347 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds