Wall clock time and date at job start Sat Apr 11 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34786 * 120.00027 * 2 1 4 4 O 1.21582 * 119.99800 * 184.60923 * 3 2 1 5 5 C 1.47566 * 119.99412 * 4.61284 * 3 2 1 6 6 C 1.38698 * 120.43768 * 310.55224 * 5 3 2 7 7 C 1.39001 * 120.75101 * 180.02562 * 6 5 3 8 8 C 1.36350 * 121.19254 * 359.97438 * 7 6 5 9 9 C 1.40343 * 119.92611 * 0.02562 * 8 7 6 10 10 C 1.40691 * 122.10378 * 179.97438 * 9 8 7 11 11 C 1.36261 * 118.66893 * 180.02562 * 10 9 8 12 12 N 1.32511 * 121.83718 * 359.97438 * 11 10 9 13 13 C 1.31312 * 122.72869 * 0.02562 * 12 11 10 14 14 C 1.40142 * 119.90900 * 0.02562 * 13 12 11 15 15 C 1.46502 * 120.00500 * 179.97438 * 2 1 3 16 16 C 1.53039 * 109.45583 * 60.03058 * 15 2 1 17 17 C 1.53196 * 109.31216 * 178.60877 * 16 15 2 18 18 N 1.46921 * 108.76903 * 54.65121 * 17 16 15 19 19 C 1.36930 * 120.62987 * 126.40858 * 18 17 16 20 20 H 1.07998 * 120.00339 * 322.50007 * 19 18 17 21 21 C 1.38818 * 119.99845 * 142.49871 * 19 18 17 22 22 N 1.31610 * 120.00206 * 358.75850 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 178.75865 * 21 19 18 24 24 H 1.48502 * 109.47099 * 59.99782 * 23 21 19 25 25 H 1.48499 * 109.47181 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46974 * 300.00026 * 23 21 19 27 27 C 1.46931 * 118.74008 * 306.38678 * 18 17 16 28 28 C 1.53038 * 109.45975 * 299.97918 * 15 2 1 29 29 H 1.09006 * 109.47001 * 93.05932 * 1 2 3 30 30 H 1.08997 * 109.47356 * 213.05588 * 1 2 3 31 31 H 1.09000 * 109.47660 * 333.05920 * 1 2 3 32 32 H 1.07997 * 119.62392 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.40182 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.03126 * 180.27685 * 8 7 6 35 35 H 1.07998 * 120.66589 * 0.02661 * 10 9 8 36 36 H 1.07994 * 119.08169 * 179.97438 * 11 10 9 37 37 H 1.07991 * 120.04710 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46254 * 180.02562 * 15 2 1 39 39 H 1.09003 * 109.50123 * 298.56558 * 16 15 2 40 40 H 1.08993 * 109.49894 * 58.66596 * 16 15 2 41 41 H 1.09010 * 109.59145 * 294.86554 * 17 16 15 42 42 H 1.09004 * 109.70440 * 174.50793 * 17 16 15 43 43 H 0.97000 * 120.00684 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58642 * 293.82397 * 27 18 17 45 45 H 1.08998 * 109.70493 * 173.46573 * 27 18 17 46 46 H 1.09007 * 109.49783 * 301.33597 * 28 15 2 47 47 H 1.09000 * 109.50021 * 61.39678 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1689 -0.0846 5 6 1.4045 2.4431 0.1028 6 6 0.3194 2.6977 -0.7227 7 6 -0.3767 3.8974 -0.6318 8 6 -0.0163 4.8565 0.2679 9 6 1.0757 4.6400 1.1224 10 6 1.4875 5.5980 2.0669 11 6 2.5578 5.3149 2.8612 12 7 3.2146 4.1679 2.7664 13 6 2.8854 3.2300 1.9083 14 6 1.7990 3.4235 1.0444 15 6 2.1976 -1.2687 0.0006 16 6 1.8282 -2.0711 -1.2491 17 6 2.6221 -3.3813 -1.2629 18 7 2.3850 -4.0910 0.0015 19 6 1.9520 -5.3900 0.0019 20 1 1.2413 -5.7226 -0.7402 21 6 2.4266 -6.2795 0.9562 22 7 3.3111 -5.8807 1.8454 23 14 1.8098 -8.0426 0.9782 24 1 2.1343 -8.6967 -0.3149 25 1 2.4664 -8.7830 2.0854 26 1 0.3387 -8.0498 1.1811 27 6 2.6218 -3.3804 1.2656 28 6 1.8281 -2.0702 1.2508 29 1 -0.3633 -0.0548 -1.0263 30 1 -0.3634 -0.8613 0.5605 31 1 -0.3634 0.9161 0.4656 32 1 0.0118 1.9554 -1.4443 33 1 -1.2182 4.0730 -1.2856 34 1 -0.5732 5.7801 0.3255 35 1 0.9657 6.5389 2.1605 36 1 2.8799 6.0456 3.5882 37 1 3.4514 2.3113 1.8679 38 1 3.2691 -1.0693 0.0009 39 1 0.7610 -2.2924 -1.2372 40 1 2.0699 -1.4902 -2.1391 41 1 3.6852 -3.1635 -1.3659 42 1 2.2936 -4.0013 -2.0971 43 1 3.6425 -6.5021 2.5124 44 1 3.6847 -3.1626 1.3688 45 1 2.2925 -3.9977 2.1015 46 1 2.0696 -1.4885 2.1405 47 1 0.7608 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006233214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:23 Heat of formation + Delta-G solvation = 30.570990 kcal Electronic energy + Delta-G solvation = -29331.492431 eV Core-core repulsion = 25479.050317 eV Total energy + Delta-G solvation = -3852.442114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21607 -40.91321 -39.05337 -38.19755 -36.62085 -34.54463 -33.82957 -32.26022 -32.01988 -31.49707 -30.49828 -28.06164 -27.11973 -25.56074 -24.70694 -24.51171 -23.87107 -23.16926 -20.98108 -20.36153 -19.17107 -18.72170 -18.35228 -18.01390 -17.49261 -17.15025 -16.80734 -16.19646 -15.78775 -15.62575 -15.37846 -15.33705 -15.24506 -14.87011 -14.75421 -14.63445 -14.21896 -14.14227 -14.07632 -13.55816 -13.40568 -13.20840 -12.97133 -12.86946 -12.83865 -12.70235 -12.56178 -12.47119 -12.08442 -12.00102 -11.92602 -11.53860 -11.39597 -11.21846 -10.90591 -10.56576 -10.51307 -10.17337 -9.68126 -9.08494 -8.57114 -7.88485 -5.47143 -0.86008 -0.13963 0.60846 1.47664 1.49836 1.53872 1.56649 1.85917 2.08671 2.49815 3.00835 3.27707 3.29980 3.43296 3.63730 3.66679 3.72283 3.81953 3.87802 3.93728 4.03477 4.16882 4.22666 4.30498 4.39585 4.45214 4.54401 4.62865 4.63839 4.66689 4.69167 4.78555 4.83305 4.85849 4.92173 5.00312 5.03612 5.05260 5.13334 5.23525 5.29861 5.35088 5.44367 5.52364 5.61109 5.64454 5.69667 5.77866 6.31281 6.43765 6.93233 7.00515 7.15893 7.81070 8.39241 9.17803 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.002568 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.417463 B =10902.385442 C =11514.225422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.595 5.595 3 C 0.551 3.449 4 O -0.580 6.580 5 C -0.122 4.122 6 C -0.065 4.065 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.046 4.046 10 C -0.134 4.134 11 C 0.050 3.950 12 N -0.512 5.512 13 C 0.120 3.880 14 C -0.093 4.093 15 C 0.154 3.846 16 C -0.119 4.119 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.268 4.268 20 H 0.069 0.931 21 C -0.045 4.045 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.185 3.815 28 C -0.129 4.129 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.137 0.863 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.004 0.996 42 H 0.065 0.935 43 H 0.251 0.749 44 H -0.013 1.013 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 25.830 -4.680 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.325 5.325 3 C 0.340 3.660 4 O -0.461 6.461 5 C -0.127 4.127 6 C -0.083 4.083 7 C -0.119 4.119 8 C -0.095 4.095 9 C -0.052 4.052 10 C -0.153 4.153 11 C -0.093 4.093 12 N -0.220 5.220 13 C -0.050 4.050 14 C -0.096 4.096 15 C 0.051 3.949 16 C -0.159 4.159 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.398 4.398 20 H 0.087 0.913 21 C -0.241 4.241 22 N -0.582 5.582 23 Si 0.799 3.201 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.197 1.197 27 C 0.059 3.941 28 C -0.169 4.169 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.173 0.827 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.202 0.798 36 H 0.197 0.803 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.005 0.995 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.092 25.701 -3.976 29.116 hybrid contribution 0.184 -1.451 0.003 1.462 sum -12.907 24.250 -3.973 27.757 Atomic orbital electron populations 1.22268 0.77294 1.04385 1.03818 1.48024 1.08586 1.04692 1.71171 1.18735 0.86788 0.84542 0.75885 1.90779 1.15663 1.87770 1.51855 1.19706 0.98937 0.93481 1.00574 1.21855 0.91197 0.98903 0.96367 1.21382 1.00318 0.91626 0.98580 1.21621 0.93877 1.01101 0.92860 1.18509 0.96494 0.92492 0.97675 1.22382 0.97677 1.00663 0.94574 1.22797 0.93375 0.93660 0.99463 1.67416 1.30946 1.02890 1.20792 1.23105 0.93725 0.97622 0.90559 1.18837 0.97610 0.95457 0.97673 1.20845 0.96064 0.81944 0.96012 1.22143 1.01421 0.95976 0.96313 1.21022 0.95651 0.92476 0.89088 1.44202 1.78081 1.10403 1.00519 1.19438 1.19214 0.86231 1.14908 0.91307 1.26176 0.96976 1.01874 0.99045 1.70110 1.33202 1.35596 1.19290 0.85292 0.77973 0.79780 0.77042 1.20061 1.22275 1.19726 1.20470 0.93861 0.90018 0.89758 1.22323 1.01358 0.96855 0.96360 0.89576 0.90727 0.89121 0.82679 0.80533 0.80562 0.79812 0.80318 0.84531 0.91765 0.90508 0.90899 0.97758 0.91607 0.94014 0.99516 0.92280 0.93010 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 8.20 127.77 1.05 2.26 16 2 N -0.59 -16.98 2.76 -826.17 -2.28 -19.26 16 3 C 0.55 17.32 6.66 86.70 0.58 17.89 16 4 O -0.58 -23.51 14.79 -3.97 -0.06 -23.57 16 5 C -0.12 -2.93 4.91 -19.89 -0.10 -3.03 16 6 C -0.06 -0.94 7.60 22.56 0.17 -0.77 16 7 C -0.10 -0.84 9.93 22.01 0.22 -0.62 16 8 C -0.08 -0.72 9.79 22.34 0.22 -0.50 16 9 C -0.05 -0.81 5.74 -21.30 -0.12 -0.93 16 10 C -0.13 -1.92 9.88 22.41 0.22 -1.69 16 11 C 0.05 0.99 11.07 84.13 0.93 1.92 16 12 N -0.51 -14.79 10.30 -195.73 -2.02 -16.81 16 13 C 0.12 3.72 10.46 85.23 0.89 4.61 16 14 C -0.09 -2.37 5.76 -21.14 -0.12 -2.49 16 15 C 0.15 5.51 2.48 45.02 0.11 5.63 16 16 C -0.12 -3.97 5.34 30.67 0.16 -3.80 16 17 C 0.14 6.07 6.52 86.36 0.56 6.64 16 18 N -0.61 -30.90 2.97 -699.08 -2.08 -32.97 16 19 C -0.27 -14.61 9.53 84.04 0.80 -13.81 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 21 C -0.04 -2.51 5.22 84.86 0.44 -2.07 16 22 N -0.94 -56.26 11.02 21.65 0.24 -56.02 16 23 Si 0.97 44.52 29.55 68.60 2.03 46.55 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.19 9.31 5.21 86.36 0.45 9.76 16 28 C -0.13 -5.05 5.30 30.67 0.16 -4.88 16 29 H 0.09 1.18 7.59 -2.38 -0.02 1.17 16 30 H 0.07 1.52 6.47 -2.39 -0.02 1.50 16 31 H 0.09 1.40 5.68 -2.39 -0.01 1.39 16 32 H 0.16 1.63 6.58 -2.91 -0.02 1.61 16 33 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 35 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.14 4.94 6.33 -2.92 -0.02 4.92 16 38 H 0.06 2.74 6.91 -2.39 -0.02 2.73 16 39 H 0.08 2.36 7.72 -2.39 -0.02 2.34 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.06 3.32 6.29 -2.39 -0.02 3.30 16 46 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.07 2.60 6.74 -2.39 -0.02 2.59 16 Total: -1.00 -78.58 371.49 3.45 -75.14 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.99 Total: 12.84 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 6.63 Total: 14.10 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.14 Total: -125.06 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.06 Total: -23.57 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -78.58 3.45 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006233214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.706 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds