Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00367 * 2 1 4 4 O 1.21565 * 120.00342 * 184.70363 * 3 2 1 5 5 C 1.47778 * 119.99895 * 4.70300 * 3 2 1 6 6 C 1.40656 * 119.69777 * 22.74225 * 5 3 2 7 7 C 1.35845 * 120.87187 * 179.97438 * 6 5 3 8 8 C 1.40393 * 119.84459 * 0.02562 * 7 6 5 9 9 C 1.40647 * 121.96762 * 180.02562 * 8 7 6 10 10 C 1.36215 * 118.72701 * 179.97438 * 9 8 7 11 11 N 1.32597 * 121.90246 * 359.96926 * 10 9 8 12 12 C 1.31238 * 122.74326 * 0.02852 * 11 10 9 13 13 C 1.40548 * 119.88306 * 0.02562 * 12 11 10 14 14 C 1.38568 * 119.69788 * 202.48077 * 5 3 2 15 15 C 1.46498 * 119.99839 * 179.97438 * 2 1 3 16 16 C 1.53047 * 109.45896 * 59.99968 * 15 2 1 17 17 C 1.53194 * 109.31232 * 178.61340 * 16 15 2 18 18 N 1.46931 * 108.89246 * 54.56236 * 17 16 15 19 19 C 1.36940 * 120.62475 * 126.45798 * 18 17 16 20 20 H 1.08002 * 120.00206 * 330.13827 * 19 18 17 21 21 C 1.38809 * 119.99449 * 150.13067 * 19 18 17 22 22 N 1.31618 * 120.00528 * 341.19493 * 21 19 18 23 23 Si 1.86805 * 119.99887 * 161.18766 * 21 19 18 24 24 H 1.48504 * 109.47023 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47342 * 120.00387 * 23 21 19 26 26 H 1.48505 * 109.47067 * 240.00321 * 23 21 19 27 27 C 1.46955 * 118.71733 * 306.64203 * 18 17 16 28 28 C 1.53040 * 109.46157 * 299.93411 * 15 2 1 29 29 H 1.09002 * 109.47532 * 264.11518 * 1 2 3 30 30 H 1.09005 * 109.47182 * 24.11215 * 1 2 3 31 31 H 1.08998 * 109.47638 * 144.10965 * 1 2 3 32 32 H 1.07993 * 119.56183 * 0.02562 * 6 5 3 33 33 H 1.08006 * 120.07255 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.62869 * 359.97438 * 9 8 7 35 35 H 1.08008 * 119.04816 * 180.02562 * 10 9 8 36 36 H 1.07995 * 120.05684 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.34431 * 359.97097 * 14 5 3 38 38 H 1.09002 * 109.45891 * 179.97438 * 15 2 1 39 39 H 1.09001 * 109.49334 * 58.66155 * 16 15 2 40 40 H 1.08991 * 109.49825 * 298.56860 * 16 15 2 41 41 H 1.09000 * 109.58815 * 174.42498 * 17 16 15 42 42 H 1.08999 * 109.58584 * 294.70632 * 17 16 15 43 43 H 0.97000 * 120.00466 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.46963 * 293.56996 * 27 18 17 45 45 H 1.09006 * 109.70974 * 173.28324 * 27 18 17 46 46 H 1.08996 * 109.49907 * 301.33409 * 28 15 2 47 47 H 1.08995 * 109.49966 * 61.43252 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3515 1.1689 -0.0863 5 6 1.4038 2.4448 0.1049 6 6 0.1165 2.4636 0.6713 7 6 -0.5803 3.6246 0.7800 8 6 -0.0139 4.8249 0.3224 9 6 -0.6951 6.0521 0.4133 10 6 -0.0828 7.1767 -0.0511 11 7 1.1315 7.1448 -0.5828 12 6 1.8261 6.0375 -0.7002 13 6 1.2845 4.8203 -0.2525 14 6 1.9912 3.6142 -0.3506 15 6 2.1974 -1.2687 0.0006 16 6 1.8275 -2.0716 -1.2488 17 6 2.6211 -3.3819 -1.2624 18 7 2.3880 -4.0924 0.0023 19 6 1.9569 -5.3922 0.0030 20 1 1.3433 -5.7581 -0.8069 21 6 2.3088 -6.2395 1.0447 22 7 3.3277 -5.9392 1.8218 23 14 1.3360 -7.8059 1.3439 24 1 0.2478 -7.9124 0.3390 25 1 2.2378 -8.9795 1.2225 26 1 0.7493 -7.7715 2.7077 27 6 2.6224 -3.3801 1.2661 28 6 1.8288 -2.0698 1.2514 29 1 -0.3634 -0.1054 1.0222 30 1 -0.3634 0.9380 -0.4198 31 1 -0.3634 -0.8325 -0.6024 32 1 -0.3234 1.5430 1.0252 33 1 -1.5682 3.6241 1.2168 34 1 -1.6846 6.1015 0.8431 35 1 -0.6010 8.1219 0.0166 36 1 2.8121 6.0616 -1.1401 37 1 2.9819 3.5956 -0.7805 38 1 3.2691 -1.0694 0.0000 39 1 2.0687 -1.4908 -2.1390 40 1 0.7603 -2.2927 -1.2363 41 1 2.2897 -4.0011 -2.0960 42 1 3.6838 -3.1643 -1.3688 43 1 3.5734 -6.5310 2.5500 44 1 3.6854 -3.1622 1.3685 45 1 2.2936 -3.9971 2.1024 46 1 2.0710 -1.4878 2.1406 47 1 0.7616 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006247012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = 66.821982 kcal Electronic energy + Delta-G solvation = -28818.819210 eV Core-core repulsion = 24967.949057 eV Total energy + Delta-G solvation = -3850.870153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33382 -40.08498 -37.78212 -37.07356 -35.32299 -33.34915 -32.81229 -31.53872 -30.26445 -30.04083 -29.54156 -27.28433 -25.71190 -24.52287 -24.05735 -22.73359 -22.25784 -21.99886 -20.12675 -19.05786 -18.47506 -17.58322 -17.16519 -16.77820 -16.09590 -15.71232 -15.47461 -15.28394 -14.87748 -14.55249 -14.46142 -14.08879 -13.88962 -13.77004 -13.67370 -13.38243 -13.18077 -13.05869 -12.72882 -12.70242 -12.39784 -12.24766 -11.71209 -11.50367 -11.31065 -11.20518 -10.85354 -10.76253 -10.58271 -10.41488 -10.23332 -10.15185 -10.00968 -9.81598 -9.75507 -9.54903 -9.36283 -8.61123 -8.49562 -8.33288 -6.70283 -5.83334 -3.26430 -0.11682 0.37119 1.45796 2.31298 2.97929 3.14109 3.34213 3.42533 3.44518 3.71945 4.01490 4.14584 4.27280 4.31552 4.46355 4.46573 4.66153 4.74777 4.79807 5.04382 5.20727 5.24118 5.25534 5.31113 5.35870 5.41113 5.44016 5.53413 5.56131 5.60225 5.62713 5.81652 5.90465 5.95919 6.01852 6.17955 6.22524 6.26047 6.35818 6.43880 6.51830 6.56038 6.73487 6.83110 6.92148 7.26293 7.42954 7.57222 7.57627 7.77701 8.16346 8.41545 9.16742 9.80017 10.38439 11.25623 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031654 B = 0.002176 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.340161 B =12864.520352 C =13228.802089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.600 5.600 3 C 0.552 3.448 4 O -0.536 6.536 5 C -0.129 4.129 6 C -0.091 4.091 7 C -0.123 4.123 8 C -0.009 4.009 9 C -0.161 4.161 10 C 0.082 3.918 11 N -0.494 5.494 12 C 0.158 3.842 13 C -0.124 4.124 14 C -0.020 4.020 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.898 5.898 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.176 3.824 28 C -0.145 4.145 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.022 0.978 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 22.845 -2.830 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.331 5.331 3 C 0.341 3.659 4 O -0.414 6.414 5 C -0.132 4.132 6 C -0.109 4.109 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.180 4.180 10 C -0.061 4.061 11 N -0.201 5.201 12 C -0.013 4.013 13 C -0.126 4.126 14 C -0.041 4.041 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.542 5.542 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.049 3.951 28 C -0.185 4.185 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.210 23.571 -2.995 25.483 hybrid contribution -1.017 -1.614 0.642 2.013 sum -10.227 21.957 -2.352 24.335 Atomic orbital electron populations 1.22436 0.80566 1.03558 1.01719 1.48020 1.06816 1.06303 1.71964 1.18278 0.87128 0.83491 0.77025 1.90785 1.13480 1.87065 1.50083 1.20029 0.95556 0.94147 1.03465 1.22037 0.93090 0.99947 0.95874 1.20902 1.00798 0.91067 1.01333 1.18322 0.93146 0.94493 0.95488 1.21935 1.01372 0.92530 1.02198 1.22255 0.91047 0.98513 0.94301 1.67486 1.07824 1.30175 1.14656 1.23332 0.98820 0.86338 0.92820 1.18997 0.95326 0.95553 1.02738 1.21441 0.99020 0.89723 0.93937 1.21251 0.97328 0.80569 0.96473 1.22372 1.01380 0.98107 0.95972 1.20866 0.95858 0.90836 0.90378 1.44068 1.78029 1.10001 0.99300 1.19168 1.24738 0.86311 1.08344 0.91706 1.25094 0.96397 0.97562 1.00372 1.70067 1.25217 1.38361 1.20534 0.86275 0.79731 0.83221 0.77830 1.20214 1.21701 1.21537 1.20692 0.95430 0.88619 0.90337 1.22556 1.01681 0.98913 0.95356 0.91907 0.89883 0.90504 0.82625 0.84560 0.84297 0.82928 0.81603 0.83561 0.88488 0.92833 0.92018 0.92405 0.96156 0.93615 0.95994 0.89771 0.93027 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 7.78 59.85 0.47 1.08 16 2 N -0.60 -8.47 2.76 -175.02 -0.48 -8.95 16 3 C 0.55 8.23 7.50 -12.36 -0.09 8.14 16 4 O -0.54 -9.90 15.86 5.31 0.08 -9.82 16 5 C -0.13 -1.50 5.55 -104.96 -0.58 -2.08 16 6 C -0.09 -0.83 7.43 -39.53 -0.29 -1.12 16 7 C -0.12 -0.98 9.77 -39.63 -0.39 -1.36 16 8 C -0.01 -0.08 5.75 -106.74 -0.61 -0.70 16 9 C -0.16 -1.19 9.87 -39.40 -0.39 -1.58 16 10 C 0.08 0.66 11.07 -17.95 -0.20 0.46 16 11 N -0.49 -4.88 10.30 -13.12 -0.14 -5.01 16 12 C 0.16 1.44 11.05 -16.93 -0.19 1.25 16 13 C -0.12 -1.22 5.74 -106.87 -0.61 -1.83 16 14 C -0.02 -0.22 9.36 -38.75 -0.36 -0.58 16 15 C 0.15 2.49 2.48 -67.89 -0.17 2.32 16 16 C -0.14 -2.35 5.29 -26.61 -0.14 -2.49 16 17 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 18 N -0.59 -14.46 2.99 -172.29 -0.51 -14.97 16 19 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 20 H 0.07 1.71 7.90 -52.49 -0.41 1.30 16 21 C 0.01 0.14 4.85 -17.43 -0.08 0.05 16 22 N -0.90 -25.84 11.47 55.49 0.64 -25.20 16 23 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 27 C 0.18 4.10 5.30 -3.69 -0.02 4.08 16 28 C -0.14 -2.67 5.34 -26.61 -0.14 -2.81 16 29 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 30 H 0.08 0.69 4.95 -51.93 -0.26 0.43 16 31 H 0.08 0.80 6.49 -51.93 -0.34 0.46 16 32 H 0.16 1.20 4.15 -52.49 -0.22 0.98 16 33 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.15 1.48 7.78 -52.48 -0.41 1.07 16 38 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.01 6.77 -51.93 -0.35 0.66 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 2.18 6.29 -51.93 -0.33 1.85 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -32.87 371.64 -10.19 -43.06 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.37 Total: 0.23 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.98 Total: -1.17 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.50 Total: -54.14 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.87 -10.19 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006247012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.887 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds