Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00367 * 2 1 4 4 O 1.21565 * 120.00342 * 184.70363 * 3 2 1 5 5 C 1.47778 * 119.99895 * 4.70300 * 3 2 1 6 6 C 1.40656 * 119.69777 * 22.74225 * 5 3 2 7 7 C 1.35845 * 120.87187 * 179.97438 * 6 5 3 8 8 C 1.40393 * 119.84459 * 0.02562 * 7 6 5 9 9 C 1.40647 * 121.96762 * 180.02562 * 8 7 6 10 10 C 1.36215 * 118.72701 * 179.97438 * 9 8 7 11 11 N 1.32597 * 121.90246 * 359.96926 * 10 9 8 12 12 C 1.31238 * 122.74326 * 0.02852 * 11 10 9 13 13 C 1.40548 * 119.88306 * 0.02562 * 12 11 10 14 14 C 1.38568 * 119.69788 * 202.48077 * 5 3 2 15 15 C 1.46498 * 119.99839 * 179.97438 * 2 1 3 16 16 C 1.53047 * 109.45896 * 59.99968 * 15 2 1 17 17 C 1.53194 * 109.31232 * 178.61340 * 16 15 2 18 18 N 1.46931 * 108.89246 * 54.56236 * 17 16 15 19 19 C 1.36940 * 120.62475 * 126.45798 * 18 17 16 20 20 H 1.08002 * 120.00206 * 330.13827 * 19 18 17 21 21 C 1.38809 * 119.99449 * 150.13067 * 19 18 17 22 22 N 1.31618 * 120.00528 * 341.19493 * 21 19 18 23 23 Si 1.86805 * 119.99887 * 161.18766 * 21 19 18 24 24 H 1.48504 * 109.47023 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47342 * 120.00387 * 23 21 19 26 26 H 1.48505 * 109.47067 * 240.00321 * 23 21 19 27 27 C 1.46955 * 118.71733 * 306.64203 * 18 17 16 28 28 C 1.53040 * 109.46157 * 299.93411 * 15 2 1 29 29 H 1.09002 * 109.47532 * 264.11518 * 1 2 3 30 30 H 1.09005 * 109.47182 * 24.11215 * 1 2 3 31 31 H 1.08998 * 109.47638 * 144.10965 * 1 2 3 32 32 H 1.07993 * 119.56183 * 0.02562 * 6 5 3 33 33 H 1.08006 * 120.07255 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.62869 * 359.97438 * 9 8 7 35 35 H 1.08008 * 119.04816 * 180.02562 * 10 9 8 36 36 H 1.07995 * 120.05684 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.34431 * 359.97097 * 14 5 3 38 38 H 1.09002 * 109.45891 * 179.97438 * 15 2 1 39 39 H 1.09001 * 109.49334 * 58.66155 * 16 15 2 40 40 H 1.08991 * 109.49825 * 298.56860 * 16 15 2 41 41 H 1.09000 * 109.58815 * 174.42498 * 17 16 15 42 42 H 1.08999 * 109.58584 * 294.70632 * 17 16 15 43 43 H 0.97000 * 120.00466 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.46963 * 293.56996 * 27 18 17 45 45 H 1.09006 * 109.70974 * 173.28324 * 27 18 17 46 46 H 1.08996 * 109.49907 * 301.33409 * 28 15 2 47 47 H 1.08995 * 109.49966 * 61.43252 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3515 1.1689 -0.0863 5 6 1.4038 2.4448 0.1049 6 6 0.1165 2.4636 0.6713 7 6 -0.5803 3.6246 0.7800 8 6 -0.0139 4.8249 0.3224 9 6 -0.6951 6.0521 0.4133 10 6 -0.0828 7.1767 -0.0511 11 7 1.1315 7.1448 -0.5828 12 6 1.8261 6.0375 -0.7002 13 6 1.2845 4.8203 -0.2525 14 6 1.9912 3.6142 -0.3506 15 6 2.1974 -1.2687 0.0006 16 6 1.8275 -2.0716 -1.2488 17 6 2.6211 -3.3819 -1.2624 18 7 2.3880 -4.0924 0.0023 19 6 1.9569 -5.3922 0.0030 20 1 1.3433 -5.7581 -0.8069 21 6 2.3088 -6.2395 1.0447 22 7 3.3277 -5.9392 1.8218 23 14 1.3360 -7.8059 1.3439 24 1 0.2478 -7.9124 0.3390 25 1 2.2378 -8.9795 1.2225 26 1 0.7493 -7.7715 2.7077 27 6 2.6224 -3.3801 1.2661 28 6 1.8288 -2.0698 1.2514 29 1 -0.3634 -0.1054 1.0222 30 1 -0.3634 0.9380 -0.4198 31 1 -0.3634 -0.8325 -0.6024 32 1 -0.3234 1.5430 1.0252 33 1 -1.5682 3.6241 1.2168 34 1 -1.6846 6.1015 0.8431 35 1 -0.6010 8.1219 0.0166 36 1 2.8121 6.0616 -1.1401 37 1 2.9819 3.5956 -0.7805 38 1 3.2691 -1.0694 0.0000 39 1 2.0687 -1.4908 -2.1390 40 1 0.7603 -2.2927 -1.2363 41 1 2.2897 -4.0011 -2.0960 42 1 3.6838 -3.1643 -1.3688 43 1 3.5734 -6.5310 2.5500 44 1 3.6854 -3.1622 1.3685 45 1 2.2936 -3.9971 2.1024 46 1 2.0710 -1.4878 2.1406 47 1 0.7616 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006247012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = 47.866254 kcal Electronic energy + Delta-G solvation = -28819.641192 eV Core-core repulsion = 24967.949057 eV Total energy + Delta-G solvation = -3851.692135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10764 -41.10364 -39.15527 -38.01792 -36.71365 -34.45109 -33.99317 -32.69357 -31.75856 -31.23462 -30.70439 -28.25842 -27.19510 -25.70552 -24.79791 -23.91523 -23.74531 -23.14282 -21.35515 -20.47255 -19.37454 -18.67472 -18.34217 -17.98566 -17.22070 -16.77050 -16.64068 -16.26276 -16.08529 -15.74638 -15.41165 -15.26102 -15.12240 -14.90224 -14.76319 -14.51552 -14.35008 -14.30184 -14.09208 -13.95264 -13.47085 -13.18226 -13.07850 -12.99747 -12.64942 -12.51249 -12.40143 -12.19084 -12.01988 -11.96306 -11.88532 -11.49151 -11.35397 -11.22864 -11.00119 -10.58099 -10.48935 -10.10804 -9.68963 -9.08647 -8.70989 -7.89370 -5.36076 -0.80704 -0.31833 0.77361 1.47119 1.49264 1.49345 1.60108 1.87412 2.23662 2.51268 3.03930 3.26455 3.32614 3.46171 3.58860 3.63611 3.68047 3.82572 3.87174 3.98623 4.02993 4.05727 4.18735 4.28888 4.38250 4.44041 4.55598 4.63404 4.65656 4.67300 4.69014 4.78628 4.83590 4.87414 4.91182 4.94484 5.02708 5.05085 5.12009 5.20058 5.27758 5.31400 5.41096 5.52409 5.62615 5.62983 5.67348 5.73152 6.34510 6.38069 6.95599 7.03583 7.12609 7.82062 8.36912 9.18181 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031654 B = 0.002176 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.340161 B =12864.520352 C =13228.802089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.597 5.597 3 C 0.548 3.452 4 O -0.585 6.585 5 C -0.142 4.142 6 C -0.097 4.097 7 C -0.108 4.108 8 C -0.023 4.023 9 C -0.152 4.152 10 C 0.069 3.931 11 N -0.515 5.515 12 C 0.148 3.852 13 C -0.135 4.135 14 C -0.027 4.027 15 C 0.155 3.845 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.262 4.262 20 H 0.070 0.930 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.289 1.289 27 C 0.183 3.817 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.005 0.995 43 H 0.250 0.750 44 H -0.011 1.011 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.050 24.485 -2.944 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.327 5.327 3 C 0.339 3.661 4 O -0.467 6.467 5 C -0.145 4.145 6 C -0.115 4.115 7 C -0.125 4.125 8 C -0.029 4.029 9 C -0.171 4.171 10 C -0.073 4.073 11 N -0.223 5.223 12 C -0.023 4.023 13 C -0.137 4.137 14 C -0.048 4.048 15 C 0.051 3.949 16 C -0.161 4.161 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.088 0.912 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.215 1.215 27 C 0.056 3.944 28 C -0.166 4.166 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.191 0.809 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.197 0.803 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.023 0.977 43 H 0.059 0.941 44 H 0.007 0.993 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.164 25.236 -3.135 28.636 hybrid contribution 0.222 -1.994 0.637 2.105 sum -12.942 23.242 -2.499 26.720 Atomic orbital electron populations 1.22786 0.77653 1.05139 1.03380 1.47929 1.08453 1.04788 1.71535 1.18829 0.86743 0.84630 0.75903 1.90757 1.15743 1.87799 1.52352 1.19842 0.96806 0.92342 1.05530 1.22149 0.91990 1.01349 0.96042 1.21275 1.01795 0.89809 0.99618 1.18693 0.92932 0.95884 0.95364 1.22285 1.02442 0.91338 1.01031 1.22768 0.90620 1.00082 0.93832 1.67517 1.08960 1.30495 1.15335 1.23583 0.99560 0.86158 0.93048 1.19078 0.96090 0.95189 1.03372 1.21445 0.98994 0.90167 0.94176 1.20829 0.96124 0.82026 0.95886 1.22156 1.01453 0.95974 0.96512 1.20996 0.95718 0.92533 0.89049 1.44319 1.78156 1.09917 1.00659 1.19522 1.24171 0.87293 1.08254 0.91203 1.25892 0.97323 1.00851 1.00498 1.70225 1.27006 1.39678 1.21221 0.85214 0.78405 0.79089 0.77741 1.18668 1.22278 1.21545 1.20465 0.94209 0.90424 0.89272 1.22268 1.01432 0.96373 0.96493 0.89862 0.87420 0.90186 0.80928 0.80931 0.80878 0.80450 0.80304 0.84291 0.91730 0.91215 0.90403 0.91805 0.97723 0.94089 0.99305 0.92695 0.92281 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 7.78 127.77 0.99 1.87 16 2 N -0.60 -16.09 2.76 -825.92 -2.28 -18.37 16 3 C 0.55 16.28 7.50 86.77 0.65 16.94 16 4 O -0.58 -22.57 15.86 -3.92 -0.06 -22.63 16 5 C -0.14 -3.16 5.55 -20.09 -0.11 -3.27 16 6 C -0.10 -1.46 7.43 22.30 0.17 -1.29 16 7 C -0.11 -1.26 9.77 22.24 0.22 -1.04 16 8 C -0.02 -0.35 5.75 -21.24 -0.12 -0.48 16 9 C -0.15 -1.68 9.87 22.39 0.22 -1.46 16 10 C 0.07 0.93 11.07 84.11 0.93 1.86 16 11 N -0.51 -9.45 10.30 -195.41 -2.01 -11.46 16 12 C 0.15 2.58 11.05 85.35 0.94 3.52 16 13 C -0.14 -2.50 5.74 -21.32 -0.12 -2.62 16 14 C -0.03 -0.57 9.36 22.81 0.21 -0.36 16 15 C 0.15 5.28 2.48 45.02 0.11 5.39 16 16 C -0.12 -3.99 5.29 30.67 0.16 -3.83 16 17 C 0.14 5.96 6.51 86.36 0.56 6.53 16 18 N -0.61 -30.22 2.99 -699.00 -2.09 -32.31 16 19 C -0.26 -14.15 9.55 84.03 0.80 -13.35 16 20 H 0.07 3.64 7.90 -2.91 -0.02 3.61 16 21 C -0.05 -2.76 4.85 84.86 0.41 -2.35 16 22 N -0.94 -55.66 11.47 21.65 0.25 -55.41 16 23 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 27 C 0.18 8.85 5.30 86.36 0.46 9.30 16 28 C -0.13 -4.61 5.34 30.67 0.16 -4.44 16 29 H 0.08 1.13 7.17 -2.39 -0.02 1.11 16 30 H 0.11 1.36 4.95 -2.38 -0.01 1.35 16 31 H 0.08 1.36 6.49 -2.39 -0.02 1.35 16 32 H 0.17 1.93 4.15 -2.91 -0.01 1.92 16 33 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 35 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.14 3.01 7.78 -2.91 -0.02 2.98 16 38 H 0.06 2.66 6.91 -2.39 -0.02 2.64 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.35 6.77 -2.39 -0.02 2.33 16 41 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.05 2.96 6.29 -2.38 -0.01 2.94 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 2.50 7.72 -2.39 -0.02 2.48 16 Total: -1.00 -74.89 371.64 3.48 -71.41 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.99 Total: 11.77 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.65 Total: 10.92 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.13 Total: -117.55 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.89 3.48 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006247012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.275 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds