Wall clock time and date at job start Sat Apr 11 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00157 * 2 1 4 4 O 1.21550 * 120.00052 * 184.45143 * 3 2 1 5 5 C 1.47888 * 120.00019 * 4.45331 * 3 2 1 6 6 C 1.40601 * 119.72907 * 23.34737 * 5 3 2 7 7 C 1.35848 * 120.95500 * 180.02562 * 6 5 3 8 8 C 1.40497 * 119.88005 * 0.02562 * 7 6 5 9 9 C 1.40484 * 121.85075 * 180.02562 * 8 7 6 10 10 N 1.31217 * 119.93805 * 179.97438 * 9 8 7 11 11 C 1.32548 * 122.81122 * 0.02562 * 10 9 8 12 12 C 1.36224 * 121.84444 * 0.02562 * 11 10 9 13 13 C 1.40760 * 118.67432 * 359.95855 * 12 11 10 14 14 C 1.38525 * 119.73129 * 203.08081 * 5 3 2 15 15 C 1.46504 * 120.00104 * 179.97438 * 2 1 3 16 16 C 1.53078 * 109.45240 * 299.79058 * 15 2 1 17 17 C 1.53191 * 109.29739 * 181.24043 * 16 15 2 18 18 N 1.46931 * 108.89216 * 305.57873 * 17 16 15 19 19 C 1.36930 * 120.62926 * 233.51011 * 18 17 16 20 20 H 1.08009 * 119.99826 * 146.83327 * 19 18 17 21 21 C 1.38809 * 120.00523 * 326.83161 * 19 18 17 22 22 N 1.31618 * 119.99663 * 341.71590 * 21 19 18 23 23 Si 1.86805 * 120.00338 * 161.70814 * 21 19 18 24 24 H 1.48501 * 109.46911 * 90.00277 * 23 21 19 25 25 H 1.48501 * 109.46902 * 210.00239 * 23 21 19 26 26 H 1.48499 * 109.46890 * 330.00476 * 23 21 19 27 27 C 1.46924 * 118.73935 * 53.53754 * 18 17 16 28 28 C 1.53044 * 109.45837 * 59.99792 * 15 2 1 29 29 H 1.09003 * 109.47355 * 263.61905 * 1 2 3 30 30 H 1.09000 * 109.47035 * 23.62237 * 1 2 3 31 31 H 1.09002 * 109.47164 * 143.61971 * 1 2 3 32 32 H 1.08000 * 119.52464 * 0.02562 * 6 5 3 33 33 H 1.07996 * 120.06186 * 180.02562 * 7 6 5 34 34 H 1.08001 * 120.02630 * 359.96264 * 9 8 7 35 35 H 1.07996 * 119.07856 * 180.02562 * 11 10 9 36 36 H 1.07997 * 120.66517 * 179.97438 * 12 11 10 37 37 H 1.08005 * 120.36353 * 359.97372 * 14 5 3 38 38 H 1.08992 * 109.46591 * 179.97438 * 15 2 1 39 39 H 1.09005 * 109.39018 * 61.36449 * 16 15 2 40 40 H 1.08993 * 109.62432 * 301.26278 * 16 15 2 41 41 H 1.08993 * 109.59047 * 185.71984 * 17 16 15 42 42 H 1.09004 * 109.58403 * 65.43679 * 17 16 15 43 43 H 0.97006 * 119.99875 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58850 * 66.17430 * 27 18 17 45 45 H 1.09001 * 109.58902 * 186.46163 * 27 18 17 46 46 H 1.09001 * 109.49598 * 58.66729 * 28 15 2 47 47 H 1.08995 * 109.50214 * 298.56884 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1687 -0.0817 5 6 1.4028 2.4460 0.0994 6 6 0.1190 2.4688 0.6723 7 6 -0.5795 3.6294 0.7756 8 6 -0.0182 4.8284 0.3053 9 6 -0.7033 6.0518 0.3918 10 7 -0.1432 7.1494 -0.0590 11 6 1.0641 7.1673 -0.6059 12 6 1.8103 6.0352 -0.7377 13 6 1.2766 4.8170 -0.2765 14 6 1.9861 3.6125 -0.3675 15 6 2.1975 -1.2687 0.0006 16 6 1.8314 -2.0682 1.2536 17 6 2.6225 -3.3800 1.2662 18 7 2.3848 -4.0911 0.0026 19 6 1.9519 -5.3901 0.0038 20 1 1.2951 -5.7412 -0.7785 21 6 2.3571 -6.2559 1.0103 22 7 3.4106 -5.9653 1.7437 23 14 1.4070 -7.8334 1.3240 24 1 1.9760 -8.9269 0.4958 25 1 1.5097 -8.1957 2.7605 26 1 -0.0198 -7.6317 0.9650 27 6 2.6212 -3.3819 -1.2623 28 6 1.8276 -2.0716 -1.2487 29 1 -0.3634 -0.1142 1.0213 30 1 -0.3633 0.9416 -0.4118 31 1 -0.3633 -0.8274 -0.6096 32 1 -0.3182 1.5504 1.0353 33 1 -1.5644 3.6304 1.2186 34 1 -1.6903 6.0887 0.8289 35 1 1.4675 8.1056 -0.9569 36 1 2.7918 6.0716 -1.1867 37 1 2.9744 3.5924 -0.8027 38 1 3.2691 -1.0695 0.0000 39 1 0.7636 -2.2874 1.2439 40 1 2.0758 -1.4874 2.1428 41 1 2.2920 -3.9981 2.1009 42 1 3.6859 -3.1644 1.3698 43 1 3.6935 -6.5701 2.4473 44 1 3.6842 -3.1642 -1.3661 45 1 2.2922 -4.0022 -2.0961 46 1 2.0689 -1.4909 -2.1390 47 1 0.7604 -2.2928 -1.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006251650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:31 Heat of formation + Delta-G solvation = 65.514874 kcal Electronic energy + Delta-G solvation = -28808.250055 eV Core-core repulsion = 24957.323222 eV Total energy + Delta-G solvation = -3850.926833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33582 -40.09577 -37.78585 -37.07023 -35.33455 -33.38591 -32.77875 -31.53729 -30.19469 -30.05122 -29.58995 -27.24965 -25.82739 -24.53705 -23.97755 -22.74578 -22.26443 -21.98663 -20.09935 -19.06900 -18.54969 -17.50537 -17.06059 -16.72490 -16.34418 -15.88818 -15.47408 -15.18796 -14.86583 -14.54606 -14.33516 -14.00153 -13.93343 -13.76847 -13.66046 -13.52260 -13.08460 -12.97176 -12.75140 -12.70566 -12.39888 -12.36179 -11.84000 -11.49726 -11.23473 -11.20312 -10.86712 -10.74556 -10.58330 -10.42955 -10.25286 -10.17484 -10.01442 -9.83888 -9.77293 -9.54728 -9.35453 -8.59444 -8.48879 -8.35442 -6.65898 -5.83824 -3.30132 -0.12012 0.35254 1.49254 2.29026 2.95899 3.13289 3.34219 3.41637 3.43598 3.71782 4.02007 4.15701 4.20940 4.38717 4.44027 4.45978 4.65097 4.76488 4.81655 5.06813 5.18229 5.25216 5.25574 5.30815 5.32882 5.37016 5.46465 5.55520 5.56613 5.61962 5.68427 5.80498 5.90702 5.92569 6.01521 6.17654 6.22961 6.25702 6.36358 6.43296 6.51092 6.55467 6.74265 6.82140 6.92588 7.23485 7.40820 7.54178 7.57795 7.78000 8.14019 8.43514 9.16640 9.79067 10.39723 11.24693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031985 B = 0.002168 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.207379 B =12910.872408 C =13272.615194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.599 5.599 3 C 0.551 3.449 4 O -0.535 6.535 5 C -0.105 4.105 6 C -0.113 4.113 7 C -0.096 4.096 8 C -0.099 4.099 9 C 0.142 3.858 10 N -0.486 5.486 11 C 0.070 3.930 12 C -0.144 4.144 13 C -0.035 4.035 14 C -0.048 4.048 15 C 0.145 3.855 16 C -0.145 4.145 17 C 0.177 3.823 18 N -0.590 5.590 19 C -0.260 4.260 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.896 5.896 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.147 3.853 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 22.772 -3.082 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.330 5.330 3 C 0.339 3.661 4 O -0.413 6.413 5 C -0.109 4.109 6 C -0.131 4.131 7 C -0.115 4.115 8 C -0.101 4.101 9 C -0.029 4.029 10 N -0.193 5.193 11 C -0.073 4.073 12 C -0.163 4.163 13 C -0.040 4.040 14 C -0.067 4.067 15 C 0.044 3.956 16 C -0.185 4.185 17 C 0.051 3.949 18 N -0.313 5.313 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.539 5.539 23 Si 0.729 3.271 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.020 3.980 28 C -0.178 4.178 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.173 0.827 33 H 0.157 0.843 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.891 23.499 -3.002 25.303 hybrid contribution -0.006 -1.642 0.211 1.656 sum -8.896 21.856 -2.791 23.762 Atomic orbital electron populations 1.22451 0.80454 1.03632 1.01825 1.48031 1.06893 1.06264 1.71807 1.18328 0.87149 0.83538 0.77127 1.90784 1.13477 1.87060 1.49983 1.20101 0.95280 0.94060 1.01476 1.21937 0.93378 1.00033 0.97745 1.20925 1.00452 0.90906 0.99256 1.19183 0.94854 0.95963 1.00093 1.23255 0.99014 0.86529 0.94131 1.67383 1.11854 1.30772 1.09325 1.22189 0.90150 0.98376 0.96538 1.22007 1.01442 0.92397 1.00490 1.18137 0.93792 0.94117 0.97931 1.21415 0.99349 0.89888 0.96061 1.21254 0.97319 0.80557 0.96491 1.22558 1.01700 0.98899 0.95329 1.20646 0.95477 0.88618 0.90181 1.44016 1.77925 1.10123 0.99197 1.19069 1.22428 0.86025 1.11451 0.91953 1.25175 0.95869 0.97471 1.00599 1.70059 1.22846 1.37849 1.23147 0.86363 0.79965 0.83519 0.77276 1.21279 1.21536 1.20402 1.20880 0.95796 0.90801 0.90475 1.22369 1.01409 0.98124 0.95899 0.91854 0.89763 0.90525 0.82665 0.84292 0.81791 0.82851 0.84130 0.83810 0.88530 0.92303 0.93002 0.90284 0.95917 0.93549 0.96195 0.92365 0.92870 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 7.79 59.85 0.47 1.06 16 2 N -0.60 -8.46 2.76 -174.96 -0.48 -8.94 16 3 C 0.55 8.26 7.50 -12.31 -0.09 8.16 16 4 O -0.54 -9.98 15.87 5.32 0.08 -9.90 16 5 C -0.10 -1.23 5.54 -104.95 -0.58 -1.81 16 6 C -0.11 -1.01 7.41 -39.55 -0.29 -1.31 16 7 C -0.10 -0.72 9.77 -39.59 -0.39 -1.11 16 8 C -0.10 -0.88 5.75 -106.78 -0.61 -1.50 16 9 C 0.14 1.16 11.04 -16.97 -0.19 0.97 16 10 N -0.49 -4.66 10.29 -13.15 -0.14 -4.80 16 11 C 0.07 0.59 11.07 -17.97 -0.20 0.39 16 12 C -0.14 -1.21 9.88 -39.35 -0.39 -1.60 16 13 C -0.03 -0.34 5.74 -106.82 -0.61 -0.96 16 14 C -0.05 -0.53 9.37 -38.78 -0.36 -0.90 16 15 C 0.15 2.49 2.48 -67.87 -0.17 2.33 16 16 C -0.14 -2.65 5.36 -26.59 -0.14 -2.80 16 17 C 0.18 4.12 5.28 -3.71 -0.02 4.10 16 18 N -0.59 -14.43 2.96 -172.31 -0.51 -14.94 16 19 C -0.26 -6.98 9.51 -15.06 -0.14 -7.12 16 20 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 21 C 0.01 0.24 4.84 -17.43 -0.08 0.15 16 22 N -0.90 -25.80 11.68 55.49 0.65 -25.15 16 23 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 28 C -0.14 -2.35 5.29 -26.61 -0.14 -2.49 16 29 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 30 H 0.08 0.69 4.91 -51.93 -0.26 0.44 16 31 H 0.08 0.80 6.49 -51.93 -0.34 0.46 16 32 H 0.16 1.17 4.22 -52.49 -0.22 0.94 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.57 7.79 -52.48 -0.41 1.16 16 38 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 39 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 2.03 6.51 -51.93 -0.34 1.69 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.02 6.77 -51.93 -0.35 0.67 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -33.00 372.09 -10.18 -43.18 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.39 Total: 0.15 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.98 Total: -1.37 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.48 Total: -53.84 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.00 -10.18 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006251650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.698 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds