Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00070 * 2 1 4 4 O 1.21500 * 120.00087 * 185.24586 * 3 2 1 5 5 C 1.48276 * 119.99716 * 5.24544 * 3 2 1 6 6 C 1.40276 * 119.24188 * 186.82992 * 5 3 2 7 7 C 1.36500 * 119.82317 * 179.97438 * 6 5 3 8 8 C 1.40755 * 118.24433 * 0.02562 * 7 6 5 9 9 C 1.40418 * 121.29093 * 180.02562 * 8 7 6 10 10 C 1.36132 * 119.65289 * 179.97438 * 9 8 7 11 11 C 1.39440 * 120.91609 * 0.02562 * 10 9 8 12 12 C 1.35994 * 121.08291 * 359.97122 * 11 10 9 13 13 C 1.40824 * 119.73409 * 0.02572 * 12 11 10 14 14 N 1.31874 * 119.23984 * 6.55806 * 5 3 2 15 15 C 1.46500 * 120.00270 * 180.02562 * 2 1 3 16 16 C 1.53046 * 109.46054 * 60.02561 * 15 2 1 17 17 C 1.53185 * 109.31316 * 178.60281 * 16 15 2 18 18 N 1.46925 * 108.76735 * 54.65424 * 17 16 15 19 19 C 1.36939 * 120.62740 * 126.40256 * 18 17 16 20 20 H 1.07997 * 120.00339 * 328.98359 * 19 18 17 21 21 C 1.38821 * 119.99613 * 148.98149 * 19 18 17 22 22 N 1.31618 * 119.99801 * 349.89219 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 169.88878 * 21 19 18 24 24 H 1.48497 * 109.46968 * 60.00165 * 23 21 19 25 25 H 1.48503 * 109.47008 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47387 * 300.00113 * 23 21 19 27 27 C 1.46922 * 118.73932 * 306.38622 * 18 17 16 28 28 C 1.53041 * 109.45822 * 299.97389 * 15 2 1 29 29 H 1.08995 * 109.47191 * 275.52873 * 1 2 3 30 30 H 1.09002 * 109.47123 * 35.53304 * 1 2 3 31 31 H 1.09000 * 109.46904 * 155.52854 * 1 2 3 32 32 H 1.08008 * 120.08903 * 0.02562 * 6 5 3 33 33 H 1.08001 * 120.88107 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.17063 * 359.95848 * 9 8 7 35 35 H 1.07996 * 119.54274 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.45498 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.13417 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46040 * 179.97438 * 15 2 1 39 39 H 1.09005 * 109.49743 * 298.57310 * 16 15 2 40 40 H 1.08999 * 109.49703 * 58.66603 * 16 15 2 41 41 H 1.08998 * 109.60014 * 294.86709 * 17 16 15 42 42 H 1.09001 * 109.70209 * 174.50739 * 17 16 15 43 43 H 0.96999 * 119.99593 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58677 * 293.81501 * 27 18 17 45 45 H 1.08999 * 109.70574 * 173.46433 * 27 18 17 46 46 H 1.08999 * 109.49688 * 301.33303 * 28 15 2 47 47 H 1.08997 * 109.49758 * 61.40272 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1694 -0.0962 5 6 1.4022 2.4486 0.1174 6 6 2.1004 3.6564 -0.0288 7 6 1.4339 4.8429 0.0764 8 6 0.0501 4.8092 0.3322 9 6 -0.6984 5.9912 0.4521 10 6 -2.0352 5.9196 0.6992 11 6 -2.6736 4.6875 0.8359 12 6 -1.9813 3.5221 0.7260 13 6 -0.5968 3.5535 0.4707 14 7 0.1046 2.4265 0.3515 15 6 2.1976 -1.2687 -0.0006 16 6 1.8282 -2.0702 -1.2509 17 6 2.6221 -3.3802 -1.2659 18 7 2.3851 -4.0910 -0.0020 19 6 1.9520 -5.3901 -0.0027 20 1 1.3243 -5.7496 -0.8046 21 6 2.3201 -6.2449 1.0273 22 7 3.2387 -5.8740 1.8938 23 14 1.5115 -7.9216 1.1834 24 1 1.7684 -8.7115 -0.0475 25 1 2.0762 -8.6361 2.3564 26 1 0.0476 -7.7503 1.3652 27 6 2.6219 -3.3815 1.2626 28 6 1.8282 -2.0712 1.2491 29 1 -0.3633 0.0990 1.0228 30 1 -0.3633 0.8363 -0.5973 31 1 -0.3633 -0.9354 -0.4257 32 1 3.1625 3.6476 -0.2251 33 1 1.9545 5.7828 -0.0328 34 1 -0.2160 6.9519 0.3491 35 1 -2.6091 6.8298 0.7916 36 1 -3.7352 4.6583 1.0322 37 1 -2.4913 2.5763 0.8342 38 1 3.2691 -1.0693 -0.0009 39 1 0.7609 -2.2914 -1.2392 40 1 2.0698 -1.4885 -2.1405 41 1 3.6851 -3.1624 -1.3688 42 1 2.2935 -3.9995 -2.1005 43 1 3.4961 -6.4715 2.6133 44 1 3.6849 -3.1638 1.3660 45 1 2.2927 -3.9995 2.0980 46 1 2.0698 -1.4903 2.1391 47 1 0.7609 -2.2920 1.2373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006323768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = 62.198456 kcal Electronic energy + Delta-G solvation = -29019.107919 eV Core-core repulsion = 25168.037275 eV Total energy + Delta-G solvation = -3851.070644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33830 -39.73458 -37.64751 -36.92827 -35.17554 -33.86403 -32.42582 -31.03864 -30.45105 -30.02241 -29.43506 -26.76632 -25.82176 -24.63727 -23.92118 -22.44648 -22.13512 -22.07678 -20.07184 -18.84296 -18.31246 -17.77343 -17.21323 -16.68735 -16.08986 -15.54453 -15.43725 -14.96040 -14.77752 -14.65929 -14.31609 -14.01387 -13.74042 -13.53712 -13.47426 -13.32613 -12.97402 -12.84072 -12.49920 -12.45907 -12.20797 -11.99384 -11.88570 -11.63058 -11.44395 -11.01544 -10.90330 -10.79631 -10.72021 -10.35105 -10.22171 -10.10861 -10.00958 -9.72397 -9.62904 -9.28311 -9.13045 -8.64007 -8.49945 -8.23310 -6.60633 -5.75538 -3.23535 -0.10268 0.36347 1.60828 2.22964 3.06020 3.12120 3.39849 3.45009 3.45855 3.77495 3.86426 4.19634 4.37758 4.45212 4.50699 4.54585 4.74461 4.78553 4.97216 5.10459 5.34072 5.39476 5.42812 5.51550 5.57192 5.57678 5.61092 5.63257 5.71336 5.90003 5.91120 5.96550 6.02681 6.07668 6.13380 6.21400 6.31796 6.38621 6.46139 6.54673 6.63899 6.67602 6.81814 6.94516 7.00482 7.39498 7.40690 7.59731 7.73873 7.81044 8.24786 8.50372 9.24865 9.86220 10.44551 11.32609 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.002397 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.165908 B =11680.401746 C =12373.220405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.583 5.583 3 C 0.559 3.441 4 O -0.536 6.536 5 C 0.123 3.877 6 C -0.123 4.123 7 C -0.065 4.065 8 C -0.090 4.090 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.106 4.106 12 C -0.083 4.083 13 C 0.117 3.883 14 N -0.433 5.433 15 C 0.143 3.857 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.905 5.905 23 Si 0.906 3.094 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.144 4.144 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 25.524 -2.926 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.313 5.313 3 C 0.345 3.655 4 O -0.413 6.413 5 C -0.030 4.030 6 C -0.144 4.144 7 C -0.091 4.091 8 C -0.092 4.092 9 C -0.120 4.120 10 C -0.128 4.128 11 C -0.126 4.126 12 C -0.102 4.102 13 C -0.005 4.005 14 N -0.145 5.145 15 C 0.041 3.959 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.184 4.184 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.399 24.586 -2.736 26.834 hybrid contribution -0.086 0.016 0.126 0.153 sum -10.485 24.602 -2.611 26.870 Atomic orbital electron populations 1.22059 0.78695 1.02278 1.02411 1.48076 1.07927 1.05725 1.69559 1.17973 0.86610 0.82995 0.77964 1.90773 1.13063 1.86582 1.50879 1.21514 0.89867 0.94519 0.97116 1.21772 1.02449 0.91461 0.98685 1.21456 0.92692 0.98899 0.96024 1.18996 0.94616 0.94627 1.00943 1.21001 0.94348 0.97031 0.99610 1.20996 0.94778 0.98177 0.98862 1.20941 1.00524 0.92023 0.99120 1.20904 0.91336 0.99514 0.98444 1.19035 0.94608 0.87937 0.98963 1.68496 1.06866 1.28860 1.10279 1.21307 0.97212 0.80712 0.96656 1.22376 1.01458 0.98053 0.95893 1.20873 0.95805 0.90847 0.90376 1.44047 1.77814 1.10264 0.99413 1.19132 1.23943 0.86106 1.09010 0.91828 1.25174 0.96984 0.97765 0.99607 1.69955 1.30926 1.36563 1.17538 0.86328 0.78932 0.83983 0.77214 1.20879 1.21625 1.21020 1.20795 0.95217 0.88541 0.90666 1.22578 1.01781 0.98929 0.95158 0.92407 0.89731 0.91676 0.83158 0.83739 0.85123 0.85432 0.85105 0.84315 0.88639 0.91956 0.92924 0.96175 0.92444 0.93514 0.96205 0.88824 0.93163 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 8.16 59.85 0.49 1.71 16 2 N -0.58 -9.58 2.76 -174.83 -0.48 -10.06 16 3 C 0.56 9.35 7.65 -12.13 -0.09 9.25 16 4 O -0.54 -10.36 15.64 5.37 0.08 -10.27 16 5 C 0.12 1.71 6.58 -82.96 -0.55 1.16 16 6 C -0.12 -1.41 9.53 -39.44 -0.38 -1.78 16 7 C -0.06 -0.58 9.88 -39.26 -0.39 -0.97 16 8 C -0.09 -0.86 5.75 -106.71 -0.61 -1.47 16 9 C -0.10 -0.70 9.77 -39.52 -0.39 -1.09 16 10 C -0.11 -0.67 9.96 -39.89 -0.40 -1.07 16 11 C -0.11 -0.70 9.94 -39.94 -0.40 -1.10 16 12 C -0.08 -0.73 9.99 -39.41 -0.39 -1.12 16 13 C 0.12 1.30 6.61 -84.85 -0.56 0.74 16 14 N -0.43 -5.55 6.08 -7.54 -0.05 -5.60 16 15 C 0.14 2.66 2.47 -67.89 -0.17 2.50 16 16 C -0.14 -2.51 5.32 -26.61 -0.14 -2.66 16 17 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 18 N -0.59 -15.00 2.99 -172.32 -0.52 -15.52 16 19 C -0.25 -6.92 9.59 -15.05 -0.14 -7.07 16 20 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 21 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 22 N -0.91 -26.42 10.99 55.49 0.61 -25.81 16 23 Si 0.91 21.73 29.57 -169.99 -5.03 16.71 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.17 4.25 5.25 -3.71 -0.02 4.23 16 28 C -0.14 -2.89 5.34 -26.61 -0.14 -3.03 16 29 H 0.06 0.78 7.99 -51.93 -0.41 0.37 16 30 H 0.08 1.09 5.78 -51.93 -0.30 0.79 16 31 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 32 H 0.15 1.63 7.62 -52.48 -0.40 1.23 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 39 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.53 6.06 -51.93 -0.31 2.22 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -32.30 374.93 -10.75 -43.06 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.64 Total: 0.46 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -4.39 Total: 1.38 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.43 Total: -56.98 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.30 -10.75 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006323768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.254 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds