Wall clock time and date at job start Sat Apr 11 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00070 * 2 1 4 4 O 1.21500 * 120.00087 * 185.24586 * 3 2 1 5 5 C 1.48276 * 119.99716 * 5.24544 * 3 2 1 6 6 C 1.40276 * 119.24188 * 186.82992 * 5 3 2 7 7 C 1.36500 * 119.82317 * 179.97438 * 6 5 3 8 8 C 1.40755 * 118.24433 * 0.02562 * 7 6 5 9 9 C 1.40418 * 121.29093 * 180.02562 * 8 7 6 10 10 C 1.36132 * 119.65289 * 179.97438 * 9 8 7 11 11 C 1.39440 * 120.91609 * 0.02562 * 10 9 8 12 12 C 1.35994 * 121.08291 * 359.97122 * 11 10 9 13 13 C 1.40824 * 119.73409 * 0.02572 * 12 11 10 14 14 N 1.31874 * 119.23984 * 6.55806 * 5 3 2 15 15 C 1.46500 * 120.00270 * 180.02562 * 2 1 3 16 16 C 1.53046 * 109.46054 * 60.02561 * 15 2 1 17 17 C 1.53185 * 109.31316 * 178.60281 * 16 15 2 18 18 N 1.46925 * 108.76735 * 54.65424 * 17 16 15 19 19 C 1.36939 * 120.62740 * 126.40256 * 18 17 16 20 20 H 1.07997 * 120.00339 * 328.98359 * 19 18 17 21 21 C 1.38821 * 119.99613 * 148.98149 * 19 18 17 22 22 N 1.31618 * 119.99801 * 349.89219 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 169.88878 * 21 19 18 24 24 H 1.48497 * 109.46968 * 60.00165 * 23 21 19 25 25 H 1.48503 * 109.47008 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47387 * 300.00113 * 23 21 19 27 27 C 1.46922 * 118.73932 * 306.38622 * 18 17 16 28 28 C 1.53041 * 109.45822 * 299.97389 * 15 2 1 29 29 H 1.08995 * 109.47191 * 275.52873 * 1 2 3 30 30 H 1.09002 * 109.47123 * 35.53304 * 1 2 3 31 31 H 1.09000 * 109.46904 * 155.52854 * 1 2 3 32 32 H 1.08008 * 120.08903 * 0.02562 * 6 5 3 33 33 H 1.08001 * 120.88107 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.17063 * 359.95848 * 9 8 7 35 35 H 1.07996 * 119.54274 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.45498 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.13417 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46040 * 179.97438 * 15 2 1 39 39 H 1.09005 * 109.49743 * 298.57310 * 16 15 2 40 40 H 1.08999 * 109.49703 * 58.66603 * 16 15 2 41 41 H 1.08998 * 109.60014 * 294.86709 * 17 16 15 42 42 H 1.09001 * 109.70209 * 174.50739 * 17 16 15 43 43 H 0.96999 * 119.99593 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58677 * 293.81501 * 27 18 17 45 45 H 1.08999 * 109.70574 * 173.46433 * 27 18 17 46 46 H 1.08999 * 109.49688 * 301.33303 * 28 15 2 47 47 H 1.08997 * 109.49758 * 61.40272 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1694 -0.0962 5 6 1.4022 2.4486 0.1174 6 6 2.1004 3.6564 -0.0288 7 6 1.4339 4.8429 0.0764 8 6 0.0501 4.8092 0.3322 9 6 -0.6984 5.9912 0.4521 10 6 -2.0352 5.9196 0.6992 11 6 -2.6736 4.6875 0.8359 12 6 -1.9813 3.5221 0.7260 13 6 -0.5968 3.5535 0.4707 14 7 0.1046 2.4265 0.3515 15 6 2.1976 -1.2687 -0.0006 16 6 1.8282 -2.0702 -1.2509 17 6 2.6221 -3.3802 -1.2659 18 7 2.3851 -4.0910 -0.0020 19 6 1.9520 -5.3901 -0.0027 20 1 1.3243 -5.7496 -0.8046 21 6 2.3201 -6.2449 1.0273 22 7 3.2387 -5.8740 1.8938 23 14 1.5115 -7.9216 1.1834 24 1 1.7684 -8.7115 -0.0475 25 1 2.0762 -8.6361 2.3564 26 1 0.0476 -7.7503 1.3652 27 6 2.6219 -3.3815 1.2626 28 6 1.8282 -2.0712 1.2491 29 1 -0.3633 0.0990 1.0228 30 1 -0.3633 0.8363 -0.5973 31 1 -0.3633 -0.9354 -0.4257 32 1 3.1625 3.6476 -0.2251 33 1 1.9545 5.7828 -0.0328 34 1 -0.2160 6.9519 0.3491 35 1 -2.6091 6.8298 0.7916 36 1 -3.7352 4.6583 1.0322 37 1 -2.4913 2.5763 0.8342 38 1 3.2691 -1.0693 -0.0009 39 1 0.7609 -2.2914 -1.2392 40 1 2.0698 -1.4885 -2.1405 41 1 3.6851 -3.1624 -1.3688 42 1 2.2935 -3.9995 -2.1005 43 1 3.4961 -6.4715 2.6133 44 1 3.6849 -3.1638 1.3660 45 1 2.2927 -3.9995 2.0980 46 1 2.0698 -1.4903 2.1391 47 1 0.7609 -2.2920 1.2373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006323768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:34 Heat of formation + Delta-G solvation = 44.707467 kcal Electronic energy + Delta-G solvation = -29019.866386 eV Core-core repulsion = 25168.037275 eV Total energy + Delta-G solvation = -3851.829110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18595 -40.92817 -39.11725 -37.82917 -36.70132 -34.75573 -34.12679 -32.20569 -31.66863 -31.28481 -30.82728 -28.00131 -27.30401 -25.94427 -24.73477 -23.89279 -23.62793 -23.06529 -21.41949 -20.46973 -19.06146 -18.83353 -18.58862 -18.01882 -17.37569 -16.85778 -16.68212 -16.28734 -15.73097 -15.53453 -15.39282 -15.27917 -15.24876 -14.89090 -14.72703 -14.37527 -14.31049 -14.18447 -14.02622 -13.87355 -13.26496 -13.20098 -12.93651 -12.69189 -12.62232 -12.55565 -12.46754 -12.38824 -12.13731 -12.00942 -11.90617 -11.62108 -11.50708 -11.41067 -11.32651 -10.57245 -10.30506 -9.89699 -9.60939 -9.25404 -8.67374 -7.86649 -5.38595 -0.84744 -0.34072 0.93458 1.35918 1.48238 1.50421 1.57345 1.82140 2.18171 2.51236 2.87229 3.08438 3.30037 3.51252 3.61760 3.64498 3.81029 3.83237 3.88773 4.01604 4.13933 4.25540 4.27677 4.33653 4.39436 4.43371 4.51210 4.62898 4.71248 4.75082 4.80093 4.85236 4.90706 4.98398 5.02081 5.03320 5.07929 5.10935 5.13074 5.27553 5.39543 5.44120 5.46511 5.51501 5.55717 5.63307 5.69593 5.87997 6.27431 6.40589 6.58256 6.98395 7.14274 7.82362 8.37073 9.19893 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.002397 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.165908 B =11680.401746 C =12373.220405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.585 5.585 3 C 0.555 3.445 4 O -0.573 6.573 5 C 0.097 3.903 6 C -0.143 4.143 7 C -0.048 4.048 8 C -0.101 4.101 9 C -0.103 4.103 10 C -0.103 4.103 11 C -0.094 4.094 12 C -0.106 4.106 13 C 0.093 3.907 14 N -0.444 5.444 15 C 0.152 3.848 16 C -0.121 4.121 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.071 0.929 21 C -0.052 4.052 22 N -0.939 5.939 23 Si 0.974 3.026 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.183 3.817 28 C -0.126 4.126 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.010 0.990 42 H 0.066 0.934 43 H 0.250 0.750 44 H -0.009 1.009 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 28.532 -3.587 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.314 5.314 3 C 0.343 3.657 4 O -0.452 6.452 5 C -0.055 4.055 6 C -0.164 4.164 7 C -0.073 4.073 8 C -0.103 4.103 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.124 4.124 13 C -0.031 4.031 14 N -0.156 5.156 15 C 0.049 3.951 16 C -0.161 4.161 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.801 3.199 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.201 1.201 27 C 0.057 3.943 28 C -0.166 4.166 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.009 0.991 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.500 27.615 -3.424 30.928 hybrid contribution 0.744 -0.719 0.340 1.089 sum -12.756 26.896 -3.084 29.927 Atomic orbital electron populations 1.22132 0.76878 1.02870 1.02811 1.48024 1.08856 1.04832 1.69736 1.18489 0.86415 0.83993 0.76807 1.90734 1.14718 1.87292 1.52480 1.21094 0.90576 0.93528 1.00304 1.21783 1.02448 0.91712 1.00414 1.21848 0.92610 0.99278 0.93566 1.19315 0.95091 0.95129 1.00718 1.21378 0.94763 0.97195 0.98762 1.21474 0.94752 0.99204 0.96677 1.21361 1.01858 0.91489 0.96659 1.21076 0.90643 1.00816 0.99912 1.19435 0.95558 0.88168 0.99891 1.68312 1.06423 1.30376 1.10531 1.20941 0.96210 0.81850 0.96094 1.22174 1.01297 0.96292 0.96355 1.20996 0.95841 0.92207 0.89059 1.44286 1.77996 1.10269 1.00687 1.19507 1.23717 0.87016 1.09042 0.91168 1.25986 0.97724 1.01470 0.99509 1.70144 1.32549 1.37701 1.18116 0.85255 0.78152 0.79505 0.76976 1.20039 1.22168 1.20052 1.20522 0.94058 0.89961 0.89793 1.22296 1.01167 0.96869 0.96287 0.92243 0.88609 0.91365 0.83518 0.80004 0.82060 0.82021 0.82303 0.84084 0.91144 0.90962 0.91072 0.97192 0.91581 0.94054 0.99063 0.91762 0.92831 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.58 8.16 127.77 1.04 3.62 16 2 N -0.59 -19.58 2.76 -825.35 -2.28 -21.85 16 3 C 0.56 19.29 7.65 86.91 0.66 19.96 16 4 O -0.57 -23.36 15.64 -3.72 -0.06 -23.41 16 5 C 0.10 2.74 6.58 42.31 0.28 3.02 16 6 C -0.14 -3.26 9.53 22.36 0.21 -3.05 16 7 C -0.05 -0.75 9.88 22.48 0.22 -0.53 16 8 C -0.10 -1.67 5.75 -21.22 -0.12 -1.79 16 9 C -0.10 -0.98 9.77 22.31 0.22 -0.77 16 10 C -0.10 -0.76 9.96 22.07 0.22 -0.54 16 11 C -0.09 -0.89 9.94 22.04 0.22 -0.67 16 12 C -0.11 -1.64 9.99 22.38 0.22 -1.42 16 13 C 0.09 1.93 6.61 40.47 0.27 2.20 16 14 N -0.44 -11.31 6.08 -177.76 -1.08 -12.39 16 15 C 0.15 5.83 2.47 45.02 0.11 5.94 16 16 C -0.12 -4.41 5.32 30.67 0.16 -4.25 16 17 C 0.15 6.32 6.52 86.36 0.56 6.88 16 18 N -0.61 -31.64 2.99 -699.10 -2.09 -33.73 16 19 C -0.26 -14.61 9.59 84.04 0.81 -13.81 16 20 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 21 C -0.05 -2.93 5.07 84.86 0.43 -2.50 16 22 N -0.94 -56.78 10.99 21.65 0.24 -56.54 16 23 Si 0.97 45.22 29.57 68.60 2.03 47.25 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 27 C 0.18 9.38 5.25 86.36 0.45 9.83 16 28 C -0.13 -5.22 5.34 30.67 0.16 -5.05 16 29 H 0.06 1.59 7.99 -2.39 -0.02 1.57 16 30 H 0.10 2.43 5.78 -2.39 -0.01 2.41 16 31 H 0.07 1.79 6.47 -2.39 -0.02 1.78 16 32 H 0.15 3.31 7.62 -2.91 -0.02 3.29 16 33 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 37 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.07 3.08 6.91 -2.39 -0.02 3.07 16 39 H 0.07 2.51 6.72 -2.38 -0.02 2.49 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.06 3.66 6.06 -2.39 -0.01 3.65 16 46 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.06 2.61 7.72 -2.39 -0.02 2.60 16 Total: -1.00 -73.73 374.93 3.87 -69.85 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.98 Total: 13.75 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.14 Total: 17.08 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -5.21 Total: -124.52 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.73 3.87 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006323768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.562 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds