Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00064 * 2 1 4 4 O 1.21606 * 119.99836 * 185.34254 * 3 2 1 5 5 C 1.47449 * 120.00134 * 5.34489 * 3 2 1 6 6 C 1.38860 * 120.46490 * 43.94588 * 5 3 2 7 7 C 1.38900 * 120.68038 * 179.76654 * 6 5 3 8 8 C 1.36379 * 121.26677 * 0.52107 * 7 6 5 9 9 C 1.40391 * 119.98556 * 359.74180 * 8 7 6 10 10 C 1.40471 * 121.94777 * 180.02562 * 9 8 7 11 11 N 1.31275 * 119.88343 * 180.02562 * 10 9 8 12 12 C 1.32547 * 122.73036 * 359.97438 * 11 10 9 13 13 C 1.36329 * 121.82564 * 359.97438 * 12 11 10 14 14 C 1.40289 * 118.70063 * 0.02562 * 13 12 11 15 15 C 1.46500 * 119.99867 * 180.02562 * 2 1 3 16 16 C 1.53030 * 109.46176 * 60.02583 * 15 2 1 17 17 C 1.53192 * 109.31496 * 178.60402 * 16 15 2 18 18 N 1.46919 * 108.76813 * 54.65382 * 17 16 15 19 19 C 1.36933 * 120.63338 * 126.40902 * 18 17 16 20 20 H 1.08001 * 119.99672 * 330.56497 * 19 18 17 21 21 C 1.38816 * 120.00388 * 150.57442 * 19 18 17 22 22 N 1.31625 * 119.99604 * 341.61599 * 21 19 18 23 23 Si 1.86793 * 120.00228 * 161.62340 * 21 19 18 24 24 H 1.48500 * 109.47213 * 89.99610 * 23 21 19 25 25 H 1.48503 * 109.46944 * 209.99386 * 23 21 19 26 26 H 1.48500 * 109.47356 * 329.99434 * 23 21 19 27 27 C 1.46933 * 118.73863 * 306.38790 * 18 17 16 28 28 C 1.53046 * 109.45959 * 299.96747 * 15 2 1 29 29 H 1.09001 * 109.47048 * 273.79675 * 1 2 3 30 30 H 1.09003 * 109.47245 * 33.79467 * 1 2 3 31 31 H 1.08996 * 109.47355 * 153.79844 * 1 2 3 32 32 H 1.08000 * 119.65756 * 0.02651 * 6 5 3 33 33 H 1.07990 * 119.36271 * 180.24216 * 7 6 5 34 34 H 1.07999 * 120.00108 * 179.72227 * 8 7 6 35 35 H 1.07996 * 120.05783 * 359.97438 * 10 9 8 36 36 H 1.08010 * 119.09009 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.65075 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.46269 * 180.02562 * 15 2 1 39 39 H 1.09007 * 109.50233 * 298.56634 * 16 15 2 40 40 H 1.09005 * 109.49937 * 58.66523 * 16 15 2 41 41 H 1.09004 * 109.59609 * 294.86577 * 17 16 15 42 42 H 1.09002 * 109.70715 * 174.51041 * 17 16 15 43 43 H 0.96998 * 119.99773 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58764 * 293.82019 * 27 18 17 45 45 H 1.09004 * 109.70300 * 173.46365 * 27 18 17 46 46 H 1.08995 * 109.50139 * 301.34154 * 28 15 2 47 47 H 1.09005 * 109.49352 * 61.40133 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1694 -0.0981 5 6 1.4065 2.4414 0.1189 6 6 0.3791 2.5793 1.0429 7 6 -0.3106 3.7791 1.1620 8 6 -0.0096 4.8500 0.3730 9 6 1.0182 4.7536 -0.5785 10 6 1.3629 5.8305 -1.4119 11 7 2.3309 5.6955 -2.2883 12 6 3.0166 4.5702 -2.4311 13 6 2.7586 3.4695 -1.6692 14 6 1.7371 3.5384 -0.7102 15 6 2.1974 -1.2687 -0.0006 16 6 1.8281 -2.0702 -1.2508 17 6 2.6218 -3.3803 -1.2657 18 7 2.3848 -4.0910 -0.0019 19 6 1.9518 -5.3901 -0.0025 20 1 1.3452 -5.7567 -0.8174 21 6 2.2923 -6.2358 1.0443 22 7 3.2991 -5.9312 1.8355 23 14 1.3220 -7.8062 1.3298 24 1 1.9391 -8.9163 0.5604 25 1 1.3350 -8.1398 2.7768 26 1 -0.0795 -7.6109 0.8794 27 6 2.6217 -3.3815 1.2628 28 6 1.8281 -2.0713 1.2492 29 1 -0.3633 0.0680 1.0254 30 1 -0.3634 0.8540 -0.5716 31 1 -0.3634 -0.9220 -0.4537 32 1 0.1164 1.7464 1.6782 33 1 -1.1033 3.8641 1.8904 34 1 -0.5621 5.7718 0.4799 35 1 0.8319 6.7676 -1.3324 36 1 3.8015 4.5240 -3.1717 37 1 3.3295 2.5623 -1.8013 38 1 3.2691 -1.0694 0.0000 39 1 0.7608 -2.2914 -1.2391 40 1 2.0697 -1.4885 -2.1404 41 1 3.6849 -3.1625 -1.3686 42 1 2.2934 -3.9996 -2.1004 43 1 3.5373 -6.5223 2.5667 44 1 3.6847 -3.1638 1.3661 45 1 2.2924 -3.9995 2.0981 46 1 2.0697 -1.4903 2.1392 47 1 0.7607 -2.2919 1.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006403315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = 50.186229 kcal Electronic energy + Delta-G solvation = -29303.793848 eV Core-core repulsion = 25452.202315 eV Total energy + Delta-G solvation = -3851.591533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34571 -39.81591 -37.69829 -37.23342 -35.21406 -33.30412 -32.52627 -31.47077 -30.46071 -29.99347 -29.38197 -27.06180 -25.47016 -24.59327 -23.82175 -23.50354 -22.24439 -21.76906 -19.72007 -18.96590 -18.42328 -17.56293 -17.00254 -16.75469 -16.55811 -16.01213 -15.41623 -14.89259 -14.86480 -14.47491 -14.41381 -14.00812 -13.91522 -13.69221 -13.52381 -13.22105 -13.07980 -12.94685 -12.66497 -12.56386 -12.42711 -12.19681 -11.94809 -11.71234 -11.51373 -11.19061 -10.85985 -10.74032 -10.51535 -10.41286 -10.25644 -10.14708 -9.94996 -9.77367 -9.70564 -9.52020 -9.40783 -8.58564 -8.42405 -8.32678 -6.71077 -5.83511 -3.26207 -0.10978 0.57851 1.43888 2.48802 2.85147 3.06035 3.34583 3.41918 3.43803 3.79585 4.11762 4.19347 4.36386 4.41895 4.46288 4.54714 4.64005 4.77254 5.04357 5.06637 5.19654 5.28293 5.30545 5.37902 5.41226 5.45856 5.52741 5.58612 5.61708 5.65566 5.68452 5.81236 5.92411 6.01049 6.05319 6.18512 6.25535 6.30796 6.43380 6.44122 6.51302 6.55333 6.72823 6.82636 6.91292 7.26536 7.41927 7.57797 7.70056 7.76746 8.13424 8.41168 9.16594 9.79891 10.37878 11.25516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.002499 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.619104 B =11203.740806 C =11745.638036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.556 3.444 4 O -0.532 6.532 5 C -0.115 4.115 6 C -0.063 4.063 7 C -0.126 4.126 8 C -0.068 4.068 9 C -0.118 4.118 10 C 0.142 3.858 11 N -0.487 5.487 12 C 0.076 3.924 13 C -0.143 4.143 14 C 0.009 3.991 15 C 0.145 3.855 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.145 4.145 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 22.252 -2.901 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.330 5.330 3 C 0.344 3.656 4 O -0.410 6.410 5 C -0.118 4.118 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.088 4.088 9 C -0.120 4.120 10 C -0.030 4.030 11 N -0.195 5.195 12 C -0.067 4.067 13 C -0.162 4.162 14 C 0.003 3.997 15 C 0.043 3.957 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.049 3.951 28 C -0.185 4.185 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.181 0.819 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.367 22.719 -3.434 24.453 hybrid contribution -0.772 -1.580 0.897 1.974 sum -9.138 21.139 -2.537 23.169 Atomic orbital electron populations 1.21917 0.79989 1.03451 1.01585 1.48098 1.07031 1.06124 1.71775 1.18127 0.87138 0.83349 0.77017 1.90789 1.13475 1.87038 1.49696 1.19955 0.98243 0.94221 0.99409 1.21648 0.92264 0.98272 0.96060 1.20863 1.00607 0.92732 1.00164 1.21138 0.95066 0.99146 0.93454 1.18989 0.98556 0.94836 0.99605 1.23200 0.92872 0.97162 0.89747 1.67421 1.06481 1.26209 1.19370 1.22267 0.98072 0.88075 0.98265 1.22203 0.97279 1.01467 0.95298 1.17890 0.94824 0.92170 0.94800 1.21261 0.97301 0.80565 0.96533 1.22376 1.01402 0.98104 0.95926 1.20865 0.95817 0.90832 0.90405 1.44067 1.77843 1.10157 0.99324 1.19128 1.25178 0.86438 1.07848 0.91744 1.25080 0.96532 0.97589 1.00233 1.70053 1.26013 1.38342 1.19922 0.86338 0.80044 0.83426 0.77198 1.21332 1.21545 1.20473 1.20699 0.95363 0.88621 0.90387 1.22567 1.01721 0.98916 0.95278 0.92477 0.91548 0.90066 0.84449 0.84802 0.84544 0.81861 0.82733 0.83265 0.88532 0.92002 0.92884 0.96183 0.92386 0.93558 0.96055 0.89581 0.93086 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 8.06 59.85 0.48 1.28 16 2 N -0.60 -8.59 2.76 -175.15 -0.48 -9.07 16 3 C 0.56 8.47 6.83 -12.51 -0.09 8.38 16 4 O -0.53 -9.90 14.46 5.27 0.08 -9.83 16 5 C -0.12 -1.43 4.90 -104.70 -0.51 -1.94 16 6 C -0.06 -0.59 7.95 -39.11 -0.31 -0.90 16 7 C -0.13 -0.90 9.92 -40.01 -0.40 -1.29 16 8 C -0.07 -0.48 9.78 -39.44 -0.39 -0.87 16 9 C -0.12 -1.16 5.74 -106.88 -0.61 -1.77 16 10 C 0.14 1.31 11.05 -16.95 -0.19 1.12 16 11 N -0.49 -5.53 10.30 -13.11 -0.14 -5.67 16 12 C 0.08 0.86 11.07 -17.93 -0.20 0.66 16 13 C -0.14 -1.82 9.23 -39.50 -0.36 -2.18 16 14 C 0.01 0.11 5.76 -106.55 -0.61 -0.50 16 15 C 0.14 2.49 2.48 -67.89 -0.17 2.32 16 16 C -0.14 -2.36 5.32 -26.62 -0.14 -2.50 16 17 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 18 N -0.59 -14.47 2.98 -172.32 -0.51 -14.99 16 19 C -0.26 -6.88 9.56 -15.06 -0.14 -7.03 16 20 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 21 C 0.00 0.13 4.87 -17.43 -0.08 0.05 16 22 N -0.90 -25.86 11.39 55.49 0.63 -25.22 16 23 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 C 0.18 4.10 5.30 -3.71 -0.02 4.08 16 28 C -0.14 -2.67 5.34 -26.61 -0.14 -2.81 16 29 H 0.06 0.52 6.78 -51.93 -0.35 0.17 16 30 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 31 H 0.08 0.90 6.46 -51.93 -0.34 0.57 16 32 H 0.14 1.13 6.16 -52.49 -0.32 0.80 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.15 2.07 6.21 -52.49 -0.33 1.75 16 38 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 39 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.23 6.22 -51.93 -0.32 1.91 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.66 371.27 -10.23 -42.89 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.46 Total: 0.93 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.91 Total: -0.86 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.50 Total: -54.95 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.66 -10.23 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006403315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.080 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds