Wall clock time and date at job start Sat Apr 11 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34785 * 120.00172 * 2 1 4 4 O 1.21600 * 119.99935 * 184.67247 * 3 2 1 5 5 C 1.47445 * 119.99742 * 4.67552 * 3 2 1 6 6 C 1.38956 * 121.17154 * 311.39605 * 5 3 2 7 7 N 1.32197 * 121.31636 * 180.32361 * 6 5 3 8 8 C 1.31194 * 123.70090 * 359.70036 * 7 6 5 9 9 C 1.40396 * 120.91063 * 359.97438 * 8 7 6 10 10 C 1.40388 * 122.14061 * 180.02562 * 9 8 7 11 11 C 1.36227 * 119.48521 * 179.97438 * 10 9 8 12 12 C 1.39297 * 121.10431 * 0.04280 * 11 10 9 13 13 C 1.36431 * 120.94782 * 359.97438 * 12 11 10 14 14 C 1.39691 * 119.44068 * 0.02562 * 13 12 11 15 15 C 1.46502 * 120.00133 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45785 * 60.03138 * 15 2 1 17 17 C 1.53190 * 109.31521 * 178.60091 * 16 15 2 18 18 N 1.46923 * 108.76009 * 54.65482 * 17 16 15 19 19 C 1.36942 * 120.62921 * 126.41420 * 18 17 16 20 20 H 1.08003 * 119.99395 * 322.46177 * 19 18 17 21 21 C 1.38810 * 120.00265 * 142.46970 * 19 18 17 22 22 N 1.31620 * 120.00126 * 358.61168 * 21 19 18 23 23 Si 1.86803 * 119.99754 * 178.61112 * 21 19 18 24 24 H 1.48495 * 109.47205 * 60.00137 * 23 21 19 25 25 H 1.48503 * 109.46647 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46924 * 299.99584 * 23 21 19 27 27 C 1.46924 * 118.74289 * 306.38228 * 18 17 16 28 28 C 1.53040 * 109.46101 * 299.97748 * 15 2 1 29 29 H 1.09003 * 109.47261 * 93.02044 * 1 2 3 30 30 H 1.08999 * 109.47275 * 213.02322 * 1 2 3 31 31 H 1.09007 * 109.47298 * 333.02505 * 1 2 3 32 32 H 1.08001 * 119.33789 * 0.02704 * 6 5 3 33 33 H 1.07991 * 119.54853 * 180.02562 * 8 7 6 34 34 H 1.07999 * 120.26085 * 0.03057 * 10 9 8 35 35 H 1.08002 * 119.44895 * 180.02562 * 11 10 9 36 36 H 1.08010 * 119.52356 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.28018 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.46188 * 180.02562 * 15 2 1 39 39 H 1.09000 * 109.49557 * 298.57006 * 16 15 2 40 40 H 1.09009 * 109.49572 * 58.65863 * 16 15 2 41 41 H 1.08997 * 109.59248 * 294.86780 * 17 16 15 42 42 H 1.08998 * 109.70220 * 174.50558 * 17 16 15 43 43 H 0.96993 * 119.99954 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58595 * 293.82616 * 27 18 17 45 45 H 1.09000 * 109.70852 * 173.46849 * 27 18 17 46 46 H 1.08996 * 109.49476 * 301.33724 * 28 15 2 47 47 H 1.09001 * 109.49596 * 61.42882 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3519 1.1690 -0.0858 5 6 1.4053 2.4420 0.1041 6 6 0.3048 2.7065 -0.7020 7 7 -0.3511 3.8509 -0.6155 8 6 -0.0334 4.8106 0.2207 9 6 1.0539 4.6722 1.0980 10 6 1.4163 5.6821 2.0034 11 6 2.4813 5.4901 2.8308 12 6 3.2180 4.3085 2.7933 13 6 2.8937 3.3068 1.9257 14 6 1.8072 3.4706 1.0630 15 6 2.1975 -1.2687 0.0006 16 6 1.8281 -2.0712 -1.2491 17 6 2.6220 -3.3813 -1.2630 18 7 2.3848 -4.0909 0.0014 19 6 1.9519 -5.3901 0.0018 20 1 1.2408 -5.7225 -0.7401 21 6 2.4268 -6.2797 0.9557 22 7 3.3138 -5.8818 1.8429 23 14 1.8069 -8.0417 0.9801 24 1 2.1277 -8.6973 -0.3131 25 1 2.4635 -8.7821 2.0874 26 1 0.3362 -8.0462 1.1861 27 6 2.6216 -3.3805 1.2655 28 6 1.8280 -2.0702 1.2509 29 1 -0.3634 -0.0542 -1.0263 30 1 -0.3634 -0.8616 0.5600 31 1 -0.3634 0.9159 0.4662 32 1 -0.0182 1.9640 -1.4168 33 1 -0.6168 5.7194 0.2349 34 1 0.8546 6.6036 2.0443 35 1 2.7593 6.2672 3.5274 36 1 4.0580 4.1835 3.4607 37 1 3.4725 2.3952 1.9054 38 1 3.2691 -1.0694 0.0009 39 1 0.7609 -2.2923 -1.2372 40 1 2.0698 -1.4901 -2.1392 41 1 3.6850 -3.1635 -1.3660 42 1 2.2935 -4.0012 -2.0972 43 1 3.6454 -6.5033 2.5097 44 1 3.6847 -3.1627 1.3687 45 1 2.2923 -3.9977 2.1014 46 1 2.0696 -1.4885 2.1404 47 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006439617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:42 Heat of formation + Delta-G solvation = 48.947582 kcal Electronic energy + Delta-G solvation = -29279.312499 eV Core-core repulsion = 25427.667254 eV Total energy + Delta-G solvation = -3851.645245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18668 -39.65472 -37.64038 -37.38612 -35.15333 -33.26080 -32.33088 -31.46479 -30.49912 -29.92149 -29.32666 -27.02862 -25.66150 -24.56629 -23.77311 -23.13388 -22.17859 -21.77469 -19.70609 -18.92083 -18.43040 -17.74161 -17.21224 -16.75791 -16.27636 -15.97607 -15.38637 -14.93766 -14.72389 -14.47575 -14.34488 -14.04923 -13.88687 -13.62021 -13.51666 -13.32325 -13.01755 -12.69828 -12.61060 -12.51068 -12.41444 -12.18215 -12.05390 -11.55161 -11.49770 -11.03078 -10.86785 -10.79539 -10.42737 -10.30801 -10.25360 -10.15149 -10.08415 -9.83342 -9.65517 -9.44362 -9.38434 -8.54741 -8.40236 -8.33098 -6.54935 -5.81817 -3.36229 -0.12685 0.59126 1.43648 2.59042 2.78674 3.06170 3.36332 3.41672 3.42268 3.74905 4.01166 4.21050 4.30735 4.40970 4.46023 4.56271 4.64684 4.85385 4.96329 5.07496 5.22705 5.28074 5.33219 5.38693 5.40343 5.44258 5.51899 5.62814 5.65382 5.70376 5.74961 5.85198 6.05722 6.07367 6.15004 6.20017 6.24083 6.32612 6.48108 6.50367 6.55060 6.62063 6.78076 6.86283 6.96617 7.34089 7.45426 7.60564 7.68640 7.77517 8.15811 8.50239 9.21910 9.79997 10.42191 11.26420 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.002545 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.204674 B =10999.539073 C =11602.666403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.561 3.439 4 O -0.532 6.532 5 C -0.158 4.158 6 C 0.111 3.889 7 N -0.493 5.493 8 C 0.165 3.835 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.118 4.118 12 C -0.094 4.094 13 C -0.102 4.102 14 C 0.008 3.992 15 C 0.146 3.854 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.259 4.259 20 H 0.062 0.938 21 C 0.011 3.989 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.177 3.823 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.256 0.744 44 H 0.020 0.980 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 23.584 0.674 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.329 5.329 3 C 0.348 3.652 4 O -0.409 6.409 5 C -0.163 4.163 6 C -0.032 4.032 7 N -0.200 5.200 8 C -0.007 4.007 9 C -0.120 4.120 10 C -0.108 4.108 11 C -0.136 4.136 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.003 3.997 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.050 3.950 28 C -0.187 4.187 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.409 23.395 0.146 24.258 hybrid contribution 0.344 -1.031 0.612 1.247 sum -6.065 22.365 0.757 23.185 Atomic orbital electron populations 1.21985 0.80003 1.03469 1.01977 1.48115 1.07069 1.06121 1.71555 1.17922 0.87052 0.83102 0.77111 1.90798 1.13295 1.87003 1.49852 1.22003 0.98465 0.95763 1.00062 1.22855 0.89765 0.94018 0.96590 1.67123 1.30415 1.01303 1.21146 1.23241 0.92092 0.96903 0.88442 1.18966 0.98220 0.94980 0.99793 1.20968 0.97227 0.97909 0.94685 1.20977 0.95624 0.97740 0.99284 1.21118 0.99309 0.93114 0.97816 1.21139 0.95845 1.00516 0.94460 1.18856 0.94724 0.91843 0.94281 1.21269 0.97216 0.80452 0.96643 1.22371 1.01441 0.98103 0.95862 1.20891 0.95745 0.90780 0.90486 1.43969 1.77908 1.10366 0.99240 1.19063 1.19334 0.85256 1.15188 0.92077 1.25374 0.96427 0.97872 0.99127 1.69913 1.31432 1.34607 1.18658 0.86361 0.78218 0.84757 0.77299 1.20760 1.21573 1.20903 1.20759 0.95161 0.88339 0.90692 1.22615 1.01742 0.99193 0.95166 0.92251 0.90147 0.91287 0.82105 0.81744 0.84677 0.85358 0.85182 0.84175 0.88557 0.92056 0.92925 0.96209 0.92393 0.93407 0.96176 0.89183 0.93183 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.20 59.84 0.49 1.30 16 2 N -0.60 -8.97 2.76 -175.15 -0.48 -9.46 16 3 C 0.56 8.90 6.81 -12.51 -0.09 8.82 16 4 O -0.53 -10.15 15.00 5.28 0.08 -10.07 16 5 C -0.16 -2.12 5.09 -102.66 -0.52 -2.64 16 6 C 0.11 1.30 8.80 -17.13 -0.15 1.15 16 7 N -0.49 -5.48 10.22 -12.58 -0.13 -5.61 16 8 C 0.16 1.50 11.00 -17.01 -0.19 1.31 16 9 C -0.12 -1.18 5.74 -106.89 -0.61 -1.79 16 10 C -0.09 -0.66 9.82 -39.50 -0.39 -1.04 16 11 C -0.12 -0.89 9.94 -39.91 -0.40 -1.29 16 12 C -0.09 -0.88 9.96 -39.84 -0.40 -1.28 16 13 C -0.10 -1.25 9.32 -39.69 -0.37 -1.62 16 14 C 0.01 0.11 5.90 -104.75 -0.62 -0.51 16 15 C 0.15 2.58 2.48 -67.89 -0.17 2.41 16 16 C -0.14 -2.41 5.34 -26.61 -0.14 -2.55 16 17 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 18 N -0.59 -14.67 2.97 -172.33 -0.51 -15.18 16 19 C -0.26 -6.99 9.53 -15.06 -0.14 -7.13 16 20 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 21 C 0.01 0.31 5.21 -17.43 -0.09 0.22 16 22 N -0.90 -25.91 11.03 55.49 0.61 -25.30 16 23 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.18 4.19 5.20 -3.71 -0.02 4.17 16 28 C -0.15 -2.79 5.30 -26.61 -0.14 -2.94 16 29 H 0.06 0.60 7.59 -51.93 -0.39 0.21 16 30 H 0.08 0.97 6.47 -51.93 -0.34 0.64 16 31 H 0.07 0.73 5.65 -51.93 -0.29 0.44 16 32 H 0.16 1.64 6.55 -52.49 -0.34 1.30 16 33 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 1.95 6.58 -52.48 -0.35 1.60 16 38 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 39 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 40 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.38 6.30 -51.93 -0.33 2.05 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.08 6.74 -51.93 -0.35 0.73 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -32.30 372.38 -10.30 -42.61 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.49 Total: 1.35 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.97 Total: -0.32 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.51 Total: -55.55 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.30 -10.30 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006439617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.553 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds