Wall clock time and date at job start Sat Apr 11 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34785 * 120.00172 * 2 1 4 4 O 1.21600 * 119.99935 * 184.67247 * 3 2 1 5 5 C 1.47445 * 119.99742 * 4.67552 * 3 2 1 6 6 C 1.38956 * 121.17154 * 311.39605 * 5 3 2 7 7 N 1.32197 * 121.31636 * 180.32361 * 6 5 3 8 8 C 1.31194 * 123.70090 * 359.70036 * 7 6 5 9 9 C 1.40396 * 120.91063 * 359.97438 * 8 7 6 10 10 C 1.40388 * 122.14061 * 180.02562 * 9 8 7 11 11 C 1.36227 * 119.48521 * 179.97438 * 10 9 8 12 12 C 1.39297 * 121.10431 * 0.04280 * 11 10 9 13 13 C 1.36431 * 120.94782 * 359.97438 * 12 11 10 14 14 C 1.39691 * 119.44068 * 0.02562 * 13 12 11 15 15 C 1.46502 * 120.00133 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45785 * 60.03138 * 15 2 1 17 17 C 1.53190 * 109.31521 * 178.60091 * 16 15 2 18 18 N 1.46923 * 108.76009 * 54.65482 * 17 16 15 19 19 C 1.36942 * 120.62921 * 126.41420 * 18 17 16 20 20 H 1.08003 * 119.99395 * 322.46177 * 19 18 17 21 21 C 1.38810 * 120.00265 * 142.46970 * 19 18 17 22 22 N 1.31620 * 120.00126 * 358.61168 * 21 19 18 23 23 Si 1.86803 * 119.99754 * 178.61112 * 21 19 18 24 24 H 1.48495 * 109.47205 * 60.00137 * 23 21 19 25 25 H 1.48503 * 109.46647 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46924 * 299.99584 * 23 21 19 27 27 C 1.46924 * 118.74289 * 306.38228 * 18 17 16 28 28 C 1.53040 * 109.46101 * 299.97748 * 15 2 1 29 29 H 1.09003 * 109.47261 * 93.02044 * 1 2 3 30 30 H 1.08999 * 109.47275 * 213.02322 * 1 2 3 31 31 H 1.09007 * 109.47298 * 333.02505 * 1 2 3 32 32 H 1.08001 * 119.33789 * 0.02704 * 6 5 3 33 33 H 1.07991 * 119.54853 * 180.02562 * 8 7 6 34 34 H 1.07999 * 120.26085 * 0.03057 * 10 9 8 35 35 H 1.08002 * 119.44895 * 180.02562 * 11 10 9 36 36 H 1.08010 * 119.52356 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.28018 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.46188 * 180.02562 * 15 2 1 39 39 H 1.09000 * 109.49557 * 298.57006 * 16 15 2 40 40 H 1.09009 * 109.49572 * 58.65863 * 16 15 2 41 41 H 1.08997 * 109.59248 * 294.86780 * 17 16 15 42 42 H 1.08998 * 109.70220 * 174.50558 * 17 16 15 43 43 H 0.96993 * 119.99954 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58595 * 293.82616 * 27 18 17 45 45 H 1.09000 * 109.70852 * 173.46849 * 27 18 17 46 46 H 1.08996 * 109.49476 * 301.33724 * 28 15 2 47 47 H 1.09001 * 109.49596 * 61.42882 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3519 1.1690 -0.0858 5 6 1.4053 2.4420 0.1041 6 6 0.3048 2.7065 -0.7020 7 7 -0.3511 3.8509 -0.6155 8 6 -0.0334 4.8106 0.2207 9 6 1.0539 4.6722 1.0980 10 6 1.4163 5.6821 2.0034 11 6 2.4813 5.4901 2.8308 12 6 3.2180 4.3085 2.7933 13 6 2.8937 3.3068 1.9257 14 6 1.8072 3.4706 1.0630 15 6 2.1975 -1.2687 0.0006 16 6 1.8281 -2.0712 -1.2491 17 6 2.6220 -3.3813 -1.2630 18 7 2.3848 -4.0909 0.0014 19 6 1.9519 -5.3901 0.0018 20 1 1.2408 -5.7225 -0.7401 21 6 2.4268 -6.2797 0.9557 22 7 3.3138 -5.8818 1.8429 23 14 1.8069 -8.0417 0.9801 24 1 2.1277 -8.6973 -0.3131 25 1 2.4635 -8.7821 2.0874 26 1 0.3362 -8.0462 1.1861 27 6 2.6216 -3.3805 1.2655 28 6 1.8280 -2.0702 1.2509 29 1 -0.3634 -0.0542 -1.0263 30 1 -0.3634 -0.8616 0.5600 31 1 -0.3634 0.9159 0.4662 32 1 -0.0182 1.9640 -1.4168 33 1 -0.6168 5.7194 0.2349 34 1 0.8546 6.6036 2.0443 35 1 2.7593 6.2672 3.5274 36 1 4.0580 4.1835 3.4607 37 1 3.4725 2.3952 1.9054 38 1 3.2691 -1.0694 0.0009 39 1 0.7609 -2.2923 -1.2372 40 1 2.0698 -1.4901 -2.1392 41 1 3.6850 -3.1635 -1.3660 42 1 2.2935 -4.0012 -2.0972 43 1 3.6454 -6.5033 2.5097 44 1 3.6847 -3.1627 1.3687 45 1 2.2923 -3.9977 2.1014 46 1 2.0696 -1.4885 2.1404 47 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006439617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:41 Heat of formation + Delta-G solvation = 30.164113 kcal Electronic energy + Delta-G solvation = -29280.127011 eV Core-core repulsion = 25427.667254 eV Total energy + Delta-G solvation = -3852.459757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08095 -40.80401 -38.98424 -38.37574 -36.63639 -34.56979 -33.69245 -32.21113 -32.01473 -31.50846 -30.51244 -28.12793 -27.20477 -25.78845 -24.53433 -24.20814 -23.88842 -23.15381 -21.05181 -20.37720 -19.27731 -18.74169 -18.53937 -18.12793 -17.48298 -16.98688 -16.77226 -16.29418 -15.75962 -15.70281 -15.39664 -15.23395 -15.18237 -14.88459 -14.77064 -14.63273 -14.23755 -14.18036 -14.09113 -13.59714 -13.38372 -13.23252 -13.00036 -12.90521 -12.87170 -12.71600 -12.58286 -12.29485 -12.10388 -12.01383 -11.94468 -11.57895 -11.43934 -11.23710 -11.05487 -10.57789 -10.46488 -10.11488 -9.72132 -9.14162 -8.58286 -7.89683 -5.48272 -0.89878 -0.15966 0.65568 1.47167 1.48783 1.50314 1.55974 1.83081 2.06605 2.48981 2.98489 3.19677 3.28544 3.41742 3.52449 3.64257 3.67572 3.78749 3.86907 3.94079 4.00393 4.12717 4.24708 4.26122 4.29023 4.42794 4.47552 4.55138 4.59743 4.63076 4.65262 4.72251 4.80197 4.86543 4.98391 4.99322 5.02542 5.04324 5.10813 5.27525 5.37161 5.40624 5.44733 5.49522 5.51899 5.63487 5.67576 5.84705 6.26003 6.42827 6.81940 6.96463 7.14881 7.79658 8.37884 9.16707 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.002545 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.204674 B =10999.539073 C =11602.666403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.596 5.596 3 C 0.562 3.438 4 O -0.578 6.578 5 C -0.193 4.193 6 C 0.125 3.875 7 N -0.514 5.514 8 C 0.186 3.814 9 C -0.133 4.133 10 C -0.068 4.068 11 C -0.124 4.124 12 C -0.084 4.084 13 C -0.146 4.146 14 C -0.010 4.010 15 C 0.156 3.844 16 C -0.121 4.121 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.269 4.269 20 H 0.068 0.932 21 C -0.044 4.044 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.186 3.814 28 C -0.129 4.129 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.211 0.789 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.006 0.994 42 H 0.065 0.935 43 H 0.251 0.749 44 H -0.011 1.011 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 26.786 0.374 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.351 3.649 4 O -0.458 6.458 5 C -0.198 4.198 6 C -0.018 4.018 7 N -0.221 5.221 8 C 0.015 3.985 9 C -0.135 4.135 10 C -0.087 4.087 11 C -0.141 4.141 12 C -0.103 4.103 13 C -0.164 4.164 14 C -0.015 4.015 15 C 0.053 3.947 16 C -0.161 4.161 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.399 4.399 20 H 0.086 0.914 21 C -0.240 4.240 22 N -0.581 5.581 23 Si 0.799 3.201 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.198 1.198 27 C 0.060 3.940 28 C -0.169 4.169 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.189 0.811 33 H 0.228 0.772 34 H 0.199 0.801 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.007 0.993 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.420 26.618 -0.178 28.236 hybrid contribution 1.295 -1.847 0.753 2.378 sum -8.124 24.771 0.575 26.076 Atomic orbital electron populations 1.22198 0.77587 1.04094 1.03622 1.48019 1.08377 1.04845 1.71352 1.18366 0.86623 0.84093 0.75843 1.90759 1.15455 1.87725 1.51891 1.21757 1.00136 0.95104 1.02780 1.22993 0.88628 0.94569 0.95628 1.67260 1.30793 1.01596 1.22466 1.24023 0.91017 0.97365 0.86088 1.19281 0.98505 0.94660 1.01092 1.21513 0.96544 0.98308 0.92343 1.21385 0.95273 0.97494 0.99980 1.21433 0.99419 0.93024 0.96385 1.21000 0.97260 1.00812 0.97323 1.19089 0.95261 0.92925 0.94253 1.20856 0.96031 0.81743 0.96078 1.22164 1.01420 0.96128 0.96346 1.21005 0.95656 0.92333 0.89140 1.44203 1.78091 1.10402 1.00514 1.19433 1.19220 0.86236 1.14979 0.91429 1.26165 0.96944 1.01845 0.99022 1.70108 1.33028 1.35617 1.19374 0.85291 0.77950 0.79763 0.77077 1.20077 1.22138 1.19819 1.20470 0.93905 0.89913 0.89735 1.22326 1.01338 0.96920 0.96285 0.89912 0.90303 0.89961 0.81103 0.77209 0.80132 0.81738 0.83788 0.87609 0.91597 0.90663 0.91048 0.97600 0.91641 0.93967 0.99332 0.92200 0.92841 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 8.20 127.77 1.05 2.53 16 2 N -0.60 -18.17 2.76 -826.29 -2.28 -20.45 16 3 C 0.56 18.71 6.81 86.67 0.59 19.30 16 4 O -0.58 -23.92 15.00 -4.03 -0.06 -23.98 16 5 C -0.19 -5.23 5.09 -18.60 -0.09 -5.33 16 6 C 0.13 2.76 8.80 84.81 0.75 3.50 16 7 N -0.51 -10.00 10.22 -193.72 -1.98 -11.98 16 8 C 0.19 2.64 11.00 85.31 0.94 3.58 16 9 C -0.13 -2.29 5.74 -21.33 -0.12 -2.41 16 10 C -0.07 -0.70 9.82 22.32 0.22 -0.48 16 11 C -0.12 -1.41 9.94 22.06 0.22 -1.19 16 12 C -0.08 -1.49 9.96 22.10 0.22 -1.27 16 13 C -0.15 -3.79 9.32 22.20 0.21 -3.58 16 14 C -0.01 -0.25 5.90 -19.95 -0.12 -0.37 16 15 C 0.16 5.71 2.48 45.02 0.11 5.82 16 16 C -0.12 -4.19 5.34 30.67 0.16 -4.03 16 17 C 0.14 6.21 6.52 86.36 0.56 6.77 16 18 N -0.61 -31.10 2.97 -699.11 -2.08 -33.17 16 19 C -0.27 -14.74 9.53 84.03 0.80 -13.94 16 20 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 21 C -0.04 -2.45 5.21 84.86 0.44 -2.01 16 22 N -0.94 -55.99 11.03 21.65 0.24 -55.75 16 23 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.19 9.34 5.20 86.36 0.45 9.79 16 28 C -0.13 -5.08 5.30 30.67 0.16 -4.92 16 29 H 0.08 1.47 7.59 -2.39 -0.02 1.45 16 30 H 0.08 1.79 6.47 -2.39 -0.02 1.77 16 31 H 0.08 1.64 5.65 -2.38 -0.01 1.62 16 32 H 0.17 3.20 6.55 -2.91 -0.02 3.18 16 33 H 0.21 0.92 8.06 -2.92 -0.02 0.90 16 34 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.11 3.38 6.58 -2.91 -0.02 3.36 16 38 H 0.07 2.84 6.91 -2.39 -0.02 2.83 16 39 H 0.07 2.44 7.72 -2.39 -0.02 2.42 16 40 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.06 3.35 6.30 -2.39 -0.02 3.33 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 2.60 6.74 -2.39 -0.02 2.58 16 Total: -1.00 -75.95 372.38 3.40 -72.55 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.99 Total: 14.39 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.55 Total: 11.76 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -6.10 Total: -121.36 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.98 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -75.95 3.40 -72.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006439617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.717 kcal (2) G-P(sol) polarization free energy of solvation -75.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds