Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.36938 * 119.99992 * 2 1 4 4 H 1.08004 * 119.99982 * 213.90148 * 3 2 1 5 5 C 1.38809 * 120.00208 * 33.89891 * 3 2 1 6 6 N 1.31623 * 119.99838 * 5.49871 * 5 3 2 7 7 Si 1.86800 * 120.00089 * 185.49895 * 5 3 2 8 8 H 1.48499 * 109.47164 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47049 * 120.00018 * 7 5 3 10 10 H 1.48502 * 109.47185 * 240.00121 * 7 5 3 11 11 C 1.46504 * 120.00128 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.49673 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49369 * 299.99539 * 11 2 1 14 14 C 1.53041 * 109.53505 * 181.31684 * 13 11 2 15 15 C 1.53193 * 109.31578 * 298.63549 * 14 13 11 16 16 N 1.46927 * 108.77570 * 54.63257 * 15 14 13 17 17 C 1.34774 * 120.63103 * 126.36875 * 16 15 14 18 18 O 1.21538 * 120.00250 * 185.99042 * 17 16 15 19 19 C 1.47908 * 119.99710 * 5.99376 * 17 16 15 20 20 C 1.38899 * 121.11310 * 53.60814 * 19 17 16 21 21 C 1.39265 * 119.57557 * 179.97438 * 20 19 17 22 22 N 1.30991 * 121.89043 * 0.05733 * 21 20 19 23 23 C 1.33535 * 121.82791 * 359.95978 * 22 21 20 24 24 C 1.40711 * 120.97862 * 180.02562 * 23 22 21 25 25 C 1.36062 * 119.74243 * 179.97438 * 24 23 22 26 26 C 1.39347 * 121.05505 * 0.02562 * 25 24 23 27 27 C 1.36244 * 120.84002 * 359.97438 * 26 25 24 28 28 C 1.40105 * 119.64266 * 0.02562 * 27 26 25 29 29 C 1.46926 * 118.73759 * 306.65190 * 16 15 14 30 30 H 1.09007 * 109.46885 * 265.04725 * 1 2 3 31 31 H 1.08998 * 109.47589 * 25.04239 * 1 2 3 32 32 H 1.08999 * 109.47908 * 145.05144 * 1 2 3 33 33 H 0.97000 * 119.99716 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.45969 * 61.29716 * 13 11 2 35 35 H 1.08995 * 109.46072 * 301.33331 * 13 11 2 36 36 H 1.08998 * 109.49919 * 178.68069 * 14 13 11 37 37 H 1.09003 * 109.50225 * 58.58647 * 14 13 11 38 38 H 1.09002 * 109.58339 * 294.85134 * 15 14 13 39 39 H 1.08997 * 109.70448 * 174.49470 * 15 14 13 40 40 H 1.07996 * 120.20873 * 0.02587 * 20 19 17 41 41 H 1.08001 * 119.05268 * 180.02562 * 21 20 19 42 42 H 1.08008 * 120.12788 * 0.02562 * 24 23 22 43 43 H 1.07996 * 119.47168 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.58094 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.18029 * 180.02562 * 27 26 25 46 46 H 1.09007 * 109.58616 * 173.14201 * 29 16 15 47 47 H 1.09005 * 109.58431 * 293.56090 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0919 1.2654 -0.5217 5 6 1.6325 2.2859 0.6704 6 7 0.5410 2.1614 1.3954 7 14 2.4858 3.9428 0.5438 8 1 3.6830 3.8179 -0.3259 9 1 1.5511 4.9375 -0.0413 10 1 2.9012 4.3904 1.8975 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8282 -2.0722 1.2485 14 6 2.6176 -3.3832 1.2656 15 6 2.2496 -4.2124 0.0311 16 7 2.4652 -3.3937 -1.1698 17 6 3.2363 -3.8447 -2.1789 18 8 3.4961 -3.1172 -3.1172 19 6 3.7664 -5.2251 -2.1445 20 6 2.9225 -6.3138 -1.9660 21 6 3.4560 -7.6000 -1.9393 22 7 4.7400 -7.8195 -2.0771 23 6 5.6103 -6.8220 -2.2519 24 6 6.9860 -7.0784 -2.3986 25 6 7.8505 -6.0428 -2.5760 26 6 7.3965 -4.7259 -2.6147 27 6 6.0717 -4.4396 -2.4763 28 6 5.1531 -5.4813 -2.2920 29 6 1.8293 -2.0715 -1.2469 30 1 -0.3633 -0.0887 1.0239 31 1 -0.3634 0.9310 -0.4350 32 1 -0.3635 -0.8423 -0.5887 33 1 0.1799 2.9300 1.8642 34 1 0.7605 -2.2913 1.2369 35 1 2.0698 -1.4913 2.1386 36 1 2.3717 -3.9443 2.1672 37 1 3.6855 -3.1652 1.2522 38 1 1.2020 -4.5080 0.0885 39 1 2.8783 -5.1016 -0.0151 40 1 1.8594 -6.1639 -1.8496 41 1 2.7921 -8.4404 -1.8004 42 1 7.3542 -8.0934 -2.3714 43 1 8.9055 -6.2446 -2.6886 44 1 8.1037 -3.9221 -2.7563 45 1 5.7314 -3.4151 -2.5084 46 1 2.1825 -1.5474 -2.1350 47 1 0.7467 -2.1890 -1.2959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027481716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = 49.864011 kcal Electronic energy + Delta-G solvation = -29568.387727 eV Core-core repulsion = 25716.782221 eV Total energy + Delta-G solvation = -3851.605506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35116 -39.74029 -37.51140 -37.31259 -35.15303 -33.73240 -32.31494 -31.39324 -30.82764 -30.31540 -28.83021 -26.11247 -25.94051 -24.44448 -23.86537 -23.61377 -22.59779 -21.67153 -19.97316 -18.86771 -18.39966 -17.66240 -17.27752 -16.74139 -16.28690 -15.55055 -15.29666 -15.00973 -14.60939 -14.46647 -14.40210 -14.12822 -14.12434 -13.82980 -13.73115 -13.36114 -13.17917 -12.73324 -12.64316 -12.38847 -12.07292 -12.00599 -11.82137 -11.60963 -11.12171 -11.03698 -10.92238 -10.79093 -10.62761 -10.46238 -10.32804 -10.26199 -10.12272 -10.01876 -9.77404 -9.53302 -9.04204 -8.64232 -8.49554 -8.42772 -6.64611 -5.80050 -3.34734 -0.02982 0.54018 1.57626 2.55545 2.69990 2.99952 3.34781 3.42624 3.45237 3.85169 3.98659 4.17201 4.43600 4.45593 4.47740 4.59747 4.85734 4.89987 4.92015 5.08262 5.11644 5.23838 5.25347 5.33770 5.40171 5.50397 5.53837 5.58203 5.71317 5.77296 5.79801 5.81317 5.94467 6.07882 6.12482 6.16428 6.22684 6.25142 6.35322 6.47842 6.57268 6.58722 6.75366 6.91423 6.98709 7.28962 7.42434 7.60050 7.63465 7.79465 8.09014 8.43909 9.20499 9.79337 10.34072 11.25892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.002960 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.837809 B = 9456.378049 C =10373.340659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.589 5.589 3 C -0.262 4.262 4 H 0.064 0.936 5 C 0.012 3.988 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.168 3.832 12 H 0.065 0.935 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.103 3.897 16 N -0.593 5.593 17 C 0.555 3.445 18 O -0.526 6.526 19 C -0.051 4.051 20 C -0.147 4.147 21 C 0.130 3.870 22 N -0.466 5.466 23 C 0.128 3.872 24 C -0.098 4.098 25 C -0.097 4.097 26 C -0.115 4.115 27 C -0.087 4.087 28 C -0.071 4.071 29 C 0.096 3.904 30 H 0.021 0.979 31 H 0.049 0.951 32 H -0.005 1.005 33 H 0.253 0.747 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -20.555 -3.933 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.310 5.310 3 C -0.391 4.391 4 H 0.082 0.918 5 C -0.187 4.187 6 N -0.545 5.545 7 Si 0.733 3.267 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.020 4.020 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.403 6.403 19 C -0.062 4.062 20 C -0.168 4.168 21 C -0.042 4.042 22 N -0.174 5.174 23 C 0.006 3.994 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.105 4.105 28 C -0.074 4.074 29 C -0.027 4.027 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.162 0.838 41 H 0.183 0.817 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.156 0.844 46 H 0.110 0.890 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.813 -20.798 -4.330 22.635 hybrid contribution -0.162 1.780 0.150 1.793 sum 7.651 -19.019 -4.180 20.922 Atomic orbital electron populations 1.20757 0.83082 0.97019 0.97629 1.43756 1.01498 0.99921 1.85861 1.19192 1.05408 0.87819 1.26721 0.91802 1.25280 0.97820 0.99197 0.96422 1.70013 1.22232 1.29479 1.32787 0.86212 0.79180 0.83971 0.77369 1.20128 1.21540 1.21546 1.20537 0.96632 0.86473 0.90437 0.91687 1.22099 0.99349 0.94505 1.01111 1.21935 1.01169 0.97529 0.96460 1.21912 1.01524 0.93768 0.84751 1.48143 1.48153 1.19084 1.17116 1.18119 0.78743 0.85920 0.83076 1.90818 1.58243 1.56762 1.34488 1.20466 0.93428 0.94490 0.97856 1.22392 1.01299 0.92882 1.00205 1.22888 0.91518 0.95869 0.93915 1.67804 1.03509 1.34832 1.11276 1.18829 0.94229 0.87684 0.98621 1.20793 0.90340 1.00162 1.00325 1.20968 1.00149 0.92427 0.98092 1.21025 0.95778 0.96973 0.99482 1.21212 0.92960 0.99378 0.96969 1.18627 0.92579 0.94769 1.01393 1.22408 0.96985 0.80863 1.02471 0.96052 0.93174 0.98623 0.93679 0.92418 0.91293 0.91125 0.91810 0.91062 0.90323 0.83770 0.81741 0.84539 0.85094 0.85153 0.84401 0.89037 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 8.11 59.84 0.49 4.26 16 2 N -0.59 -14.33 2.78 -173.61 -0.48 -14.82 16 3 C -0.26 -7.11 9.46 -15.06 -0.14 -7.26 16 4 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 5 C 0.01 0.34 5.17 -17.43 -0.09 0.25 16 6 N -0.90 -25.75 11.09 55.49 0.62 -25.13 16 7 Si 0.90 21.64 29.56 -169.99 -5.02 16.62 16 8 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.37 2.73 -68.03 -0.19 3.18 16 12 H 0.06 1.40 7.89 -51.93 -0.41 0.99 16 13 C -0.13 -2.25 5.15 -26.69 -0.14 -2.39 16 14 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 15 C 0.10 1.22 5.62 -3.71 -0.02 1.20 16 16 N -0.59 -8.81 2.98 -174.12 -0.52 -9.33 16 17 C 0.56 8.70 6.54 -12.30 -0.08 8.62 16 18 O -0.53 -10.08 15.20 5.33 0.08 -10.00 16 19 C -0.05 -0.67 4.66 -104.34 -0.49 -1.15 16 20 C -0.15 -1.48 7.89 -38.96 -0.31 -1.78 16 21 C 0.13 1.20 11.14 -17.53 -0.20 1.01 16 22 N -0.47 -5.39 10.30 -11.01 -0.11 -5.50 16 23 C 0.13 1.57 6.61 -84.87 -0.56 1.01 16 24 C -0.10 -0.98 9.98 -39.43 -0.39 -1.38 16 25 C -0.10 -0.86 9.94 -39.95 -0.40 -1.26 16 26 C -0.11 -1.18 9.96 -39.89 -0.40 -1.57 16 27 C -0.09 -1.12 9.25 -39.60 -0.37 -1.49 16 28 C -0.07 -0.94 5.76 -106.52 -0.61 -1.56 16 29 C 0.10 1.70 5.77 -3.94 -0.02 1.68 16 30 H 0.02 0.53 7.74 -51.92 -0.40 0.13 16 31 H 0.05 1.29 7.23 -51.93 -0.38 0.92 16 32 H 0.00 -0.09 6.35 -51.93 -0.33 -0.42 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 34 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.81 5.39 -51.93 -0.28 0.53 16 40 H 0.14 1.13 7.79 -52.49 -0.41 0.72 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.14 1.99 6.48 -52.49 -0.34 1.65 16 46 H 0.09 1.84 7.00 -51.92 -0.36 1.48 16 47 H 0.07 1.18 6.48 -51.93 -0.34 0.84 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -32.17 374.05 -10.45 -42.62 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.57 Total: 0.43 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -4.07 Total: -0.53 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.50 Total: -54.78 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.17 -10.45 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027481716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.487 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds