Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.36938 * 119.99992 * 2 1 4 4 H 1.08004 * 119.99982 * 213.90148 * 3 2 1 5 5 C 1.38809 * 120.00208 * 33.89891 * 3 2 1 6 6 N 1.31623 * 119.99838 * 5.49871 * 5 3 2 7 7 Si 1.86800 * 120.00089 * 185.49895 * 5 3 2 8 8 H 1.48499 * 109.47164 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47049 * 120.00018 * 7 5 3 10 10 H 1.48502 * 109.47185 * 240.00121 * 7 5 3 11 11 C 1.46504 * 120.00128 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.49673 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49369 * 299.99539 * 11 2 1 14 14 C 1.53041 * 109.53505 * 181.31684 * 13 11 2 15 15 C 1.53193 * 109.31578 * 298.63549 * 14 13 11 16 16 N 1.46927 * 108.77570 * 54.63257 * 15 14 13 17 17 C 1.34774 * 120.63103 * 126.36875 * 16 15 14 18 18 O 1.21538 * 120.00250 * 185.99042 * 17 16 15 19 19 C 1.47908 * 119.99710 * 5.99376 * 17 16 15 20 20 C 1.38899 * 121.11310 * 53.60814 * 19 17 16 21 21 C 1.39265 * 119.57557 * 179.97438 * 20 19 17 22 22 N 1.30991 * 121.89043 * 0.05733 * 21 20 19 23 23 C 1.33535 * 121.82791 * 359.95978 * 22 21 20 24 24 C 1.40711 * 120.97862 * 180.02562 * 23 22 21 25 25 C 1.36062 * 119.74243 * 179.97438 * 24 23 22 26 26 C 1.39347 * 121.05505 * 0.02562 * 25 24 23 27 27 C 1.36244 * 120.84002 * 359.97438 * 26 25 24 28 28 C 1.40105 * 119.64266 * 0.02562 * 27 26 25 29 29 C 1.46926 * 118.73759 * 306.65190 * 16 15 14 30 30 H 1.09007 * 109.46885 * 265.04725 * 1 2 3 31 31 H 1.08998 * 109.47589 * 25.04239 * 1 2 3 32 32 H 1.08999 * 109.47908 * 145.05144 * 1 2 3 33 33 H 0.97000 * 119.99716 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.45969 * 61.29716 * 13 11 2 35 35 H 1.08995 * 109.46072 * 301.33331 * 13 11 2 36 36 H 1.08998 * 109.49919 * 178.68069 * 14 13 11 37 37 H 1.09003 * 109.50225 * 58.58647 * 14 13 11 38 38 H 1.09002 * 109.58339 * 294.85134 * 15 14 13 39 39 H 1.08997 * 109.70448 * 174.49470 * 15 14 13 40 40 H 1.07996 * 120.20873 * 0.02587 * 20 19 17 41 41 H 1.08001 * 119.05268 * 180.02562 * 21 20 19 42 42 H 1.08008 * 120.12788 * 0.02562 * 24 23 22 43 43 H 1.07996 * 119.47168 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.58094 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.18029 * 180.02562 * 27 26 25 46 46 H 1.09007 * 109.58616 * 173.14201 * 29 16 15 47 47 H 1.09005 * 109.58431 * 293.56090 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0919 1.2654 -0.5217 5 6 1.6325 2.2859 0.6704 6 7 0.5410 2.1614 1.3954 7 14 2.4858 3.9428 0.5438 8 1 3.6830 3.8179 -0.3259 9 1 1.5511 4.9375 -0.0413 10 1 2.9012 4.3904 1.8975 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8282 -2.0722 1.2485 14 6 2.6176 -3.3832 1.2656 15 6 2.2496 -4.2124 0.0311 16 7 2.4652 -3.3937 -1.1698 17 6 3.2363 -3.8447 -2.1789 18 8 3.4961 -3.1172 -3.1172 19 6 3.7664 -5.2251 -2.1445 20 6 2.9225 -6.3138 -1.9660 21 6 3.4560 -7.6000 -1.9393 22 7 4.7400 -7.8195 -2.0771 23 6 5.6103 -6.8220 -2.2519 24 6 6.9860 -7.0784 -2.3986 25 6 7.8505 -6.0428 -2.5760 26 6 7.3965 -4.7259 -2.6147 27 6 6.0717 -4.4396 -2.4763 28 6 5.1531 -5.4813 -2.2920 29 6 1.8293 -2.0715 -1.2469 30 1 -0.3633 -0.0887 1.0239 31 1 -0.3634 0.9310 -0.4350 32 1 -0.3635 -0.8423 -0.5887 33 1 0.1799 2.9300 1.8642 34 1 0.7605 -2.2913 1.2369 35 1 2.0698 -1.4913 2.1386 36 1 2.3717 -3.9443 2.1672 37 1 3.6855 -3.1652 1.2522 38 1 1.2020 -4.5080 0.0885 39 1 2.8783 -5.1016 -0.0151 40 1 1.8594 -6.1639 -1.8496 41 1 2.7921 -8.4404 -1.8004 42 1 7.3542 -8.0934 -2.3714 43 1 8.9055 -6.2446 -2.6886 44 1 8.1037 -3.9221 -2.7563 45 1 5.7314 -3.4151 -2.5084 46 1 2.1825 -1.5474 -2.1350 47 1 0.7467 -2.1890 -1.2959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027481716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = 31.119080 kcal Electronic energy + Delta-G solvation = -29569.200568 eV Core-core repulsion = 25716.782221 eV Total energy + Delta-G solvation = -3852.418347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28182 -40.89546 -38.95747 -38.10479 -36.80784 -34.76026 -33.81286 -32.98060 -31.61729 -31.26127 -30.36410 -28.03596 -27.18906 -25.60565 -25.13466 -24.61712 -23.61276 -23.10312 -21.27429 -20.18289 -19.30500 -18.80503 -18.54594 -18.21075 -17.46263 -16.99291 -16.54775 -16.23607 -15.75204 -15.64803 -15.44078 -15.33896 -15.27447 -15.04477 -14.90191 -14.59529 -14.48051 -14.23621 -13.81801 -13.79156 -13.70650 -12.92885 -12.88800 -12.81458 -12.61659 -12.58119 -12.37290 -12.35136 -12.15436 -12.00988 -11.84564 -11.81077 -11.66688 -11.43504 -11.26155 -10.68085 -10.50099 -9.84571 -9.81683 -9.31696 -8.64325 -7.90221 -5.47497 -0.87753 -0.24416 0.68526 1.41233 1.42101 1.44233 1.53726 1.77411 1.95394 2.46103 3.01941 3.13972 3.25014 3.31568 3.57603 3.61762 3.66706 3.82999 3.93360 3.99252 4.04830 4.09826 4.17206 4.19641 4.31989 4.38003 4.48082 4.53072 4.55597 4.66209 4.73955 4.79465 4.81225 4.89911 4.96394 4.98085 5.04980 5.09176 5.23380 5.31594 5.34307 5.42369 5.44946 5.45499 5.47410 5.61883 5.66114 5.82340 6.23024 6.35679 6.81002 6.88670 7.13237 7.80251 8.28386 9.13045 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.002960 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.837809 B = 9456.378049 C =10373.340659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.275 4.275 4 H 0.053 0.947 5 C -0.035 4.035 6 N -0.927 5.927 7 Si 0.965 3.035 8 H -0.272 1.272 9 H -0.287 1.287 10 H -0.286 1.286 11 C 0.168 3.832 12 H 0.038 0.962 13 C -0.120 4.120 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.591 5.591 17 C 0.556 3.444 18 O -0.574 6.574 19 C -0.078 4.078 20 C -0.127 4.127 21 C 0.135 3.865 22 N -0.475 5.475 23 C 0.110 3.890 24 C -0.099 4.099 25 C -0.092 4.092 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.088 4.088 29 C 0.113 3.887 30 H 0.004 0.996 31 H 0.020 0.980 32 H 0.029 0.971 33 H 0.251 0.749 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.172 0.828 41 H 0.209 0.791 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.148 0.852 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -24.067 -3.562 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.329 5.329 3 C -0.405 4.405 4 H 0.071 0.929 5 C -0.232 4.232 6 N -0.572 5.572 7 Si 0.792 3.208 8 H -0.197 1.197 9 H -0.213 1.213 10 H -0.213 1.213 11 C 0.060 3.940 12 H 0.057 0.943 13 C -0.159 4.159 14 C -0.162 4.162 15 C -0.018 4.018 16 N -0.322 5.322 17 C 0.345 3.655 18 O -0.454 6.454 19 C -0.090 4.090 20 C -0.147 4.147 21 C -0.037 4.037 22 N -0.184 5.184 23 C -0.012 4.012 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.091 4.091 29 C -0.011 4.011 30 H 0.022 0.978 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.189 0.811 41 H 0.225 0.775 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.165 0.835 45 H 0.126 0.874 46 H 0.078 0.922 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.239 -24.357 -3.945 26.014 hybrid contribution -0.242 2.790 -0.001 2.800 sum 7.997 -21.568 -3.946 23.339 Atomic orbital electron populations 1.20514 0.82774 0.96806 0.96802 1.43936 1.01928 1.00716 1.86311 1.19377 1.05209 0.89492 1.26448 0.92900 1.25939 0.98572 1.02266 0.96442 1.70142 1.23304 1.30120 1.33609 0.85260 0.78230 0.80013 0.77267 1.19699 1.21343 1.21266 1.20610 0.94699 0.85666 0.93037 0.94347 1.21895 1.00366 0.95839 0.97811 1.21885 0.99725 0.95704 0.98875 1.22182 1.03863 0.93490 0.82251 1.48155 1.47744 1.18089 1.18228 1.18573 0.77807 0.86863 0.82276 1.90783 1.59731 1.58430 1.36409 1.20274 0.94076 0.93414 1.01206 1.22748 1.02164 0.92190 0.97594 1.23589 0.91282 0.96686 0.92125 1.67885 1.04478 1.34523 1.11487 1.19112 0.95441 0.87215 0.99386 1.21152 0.89681 1.01517 0.99334 1.21320 1.01859 0.91195 0.96808 1.21326 0.94966 0.98569 0.97647 1.21113 0.94548 0.98233 1.00196 1.18773 0.92766 0.95431 1.02094 1.21916 0.97438 0.82137 0.99635 0.97799 0.96119 0.95227 0.93935 0.91703 0.94146 0.87703 0.92927 0.88043 0.88048 0.81051 0.77459 0.82402 0.81482 0.83455 0.87396 0.92209 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.49 8.11 127.77 1.04 9.53 16 2 N -0.61 -30.63 2.78 -703.17 -1.95 -32.58 16 3 C -0.27 -15.57 9.46 84.03 0.79 -14.78 16 4 H 0.05 3.04 7.83 -2.91 -0.02 3.02 16 5 C -0.04 -2.00 5.17 84.86 0.44 -1.56 16 6 N -0.93 -54.39 11.09 21.65 0.24 -54.15 16 7 Si 0.96 45.68 29.56 68.60 2.03 47.71 16 8 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.17 6.95 2.73 44.92 0.12 7.07 16 12 H 0.04 1.76 7.89 -2.39 -0.02 1.74 16 13 C -0.12 -4.09 5.15 30.62 0.16 -3.93 16 14 C -0.12 -2.99 6.08 30.67 0.19 -2.81 16 15 C 0.10 2.14 5.62 86.36 0.49 2.62 16 16 N -0.59 -17.31 2.98 -823.08 -2.45 -19.76 16 17 C 0.56 17.77 6.54 86.81 0.57 18.34 16 18 O -0.57 -23.41 15.20 -3.83 -0.06 -23.47 16 19 C -0.08 -1.99 4.66 -19.68 -0.09 -2.08 16 20 C -0.13 -2.13 7.89 22.68 0.18 -1.95 16 21 C 0.14 1.96 11.14 85.07 0.95 2.91 16 22 N -0.48 -9.58 10.30 -188.74 -1.94 -11.52 16 23 C 0.11 2.50 6.61 40.34 0.27 2.76 16 24 C -0.10 -1.75 9.98 22.37 0.22 -1.53 16 25 C -0.09 -1.44 9.94 22.03 0.22 -1.22 16 26 C -0.11 -2.16 9.96 22.07 0.22 -1.94 16 27 C -0.12 -3.32 9.25 22.26 0.21 -3.11 16 28 C -0.09 -2.32 5.76 -21.09 -0.12 -2.45 16 29 C 0.11 4.10 5.77 86.22 0.50 4.60 16 30 H 0.00 0.19 7.74 -2.38 -0.02 0.17 16 31 H 0.02 1.08 7.23 -2.39 -0.02 1.06 16 32 H 0.03 1.20 6.35 -2.39 -0.02 1.19 16 33 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.06 2.13 7.72 -2.39 -0.02 2.11 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.73 5.39 -2.39 -0.01 1.71 16 40 H 0.17 1.89 7.79 -2.91 -0.02 1.86 16 41 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.11 3.50 6.48 -2.91 -0.02 3.48 16 46 H 0.06 2.56 7.00 -2.38 -0.02 2.54 16 47 H 0.08 2.67 6.48 -2.38 -0.02 2.65 16 Total: -1.00 -75.53 374.05 3.18 -72.35 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.98 Total: 10.95 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.34 Total: 10.48 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -6.11 Total: -118.02 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.53 3.18 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027481716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.472 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds