Wall clock time and date at job start Sat Apr 11 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99908 * 2 1 4 4 H 1.07999 * 119.99861 * 213.89886 * 3 2 1 5 5 C 1.38814 * 120.00282 * 33.89873 * 3 2 1 6 6 N 1.31620 * 119.99620 * 5.49500 * 5 3 2 7 7 Si 1.86794 * 120.00246 * 185.49485 * 5 3 2 8 8 H 1.48497 * 109.47027 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47027 * 119.99924 * 7 5 3 10 10 H 1.48498 * 109.47304 * 239.99599 * 7 5 3 11 11 C 1.46492 * 120.00167 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.50321 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49877 * 60.00051 * 11 2 1 14 14 C 1.53041 * 109.54175 * 178.68319 * 13 11 2 15 15 C 1.53193 * 109.30945 * 61.36136 * 14 13 11 16 16 N 1.46923 * 108.89626 * 305.29638 * 15 14 13 17 17 C 1.34776 * 120.62793 * 233.67723 * 16 15 14 18 18 O 1.21543 * 119.99634 * 174.01110 * 17 16 15 19 19 C 1.47908 * 120.00331 * 354.01721 * 17 16 15 20 20 C 1.38891 * 121.10801 * 306.38234 * 19 17 16 21 21 C 1.39270 * 119.58060 * 179.68486 * 20 19 17 22 22 N 1.31002 * 121.87714 * 0.66350 * 21 20 19 23 23 C 1.33530 * 121.82785 * 359.63792 * 22 21 20 24 24 C 1.40716 * 120.96547 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.73990 * 179.97438 * 24 23 22 26 26 C 1.39356 * 121.05378 * 0.04077 * 25 24 23 27 27 C 1.36245 * 120.84031 * 359.97438 * 26 25 24 28 28 C 1.40101 * 119.64284 * 359.97438 * 27 26 25 29 29 C 1.47206 * 118.55473 * 53.53966 * 16 15 14 30 30 H 1.09002 * 109.46710 * 265.05048 * 1 2 3 31 31 H 1.09002 * 109.47244 * 25.05175 * 1 2 3 32 32 H 1.08994 * 109.46865 * 145.05046 * 1 2 3 33 33 H 0.97003 * 120.00101 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.45651 * 58.66438 * 13 11 2 35 35 H 1.08996 * 109.45887 * 298.71005 * 13 11 2 36 36 H 1.09004 * 109.49469 * 301.41908 * 14 13 11 37 37 H 1.08991 * 109.52680 * 181.33362 * 14 13 11 38 38 H 1.09002 * 109.58249 * 65.16056 * 15 14 13 39 39 H 1.08997 * 109.58127 * 185.43253 * 15 14 13 40 40 H 1.08001 * 120.21137 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.06478 * 180.32281 * 21 20 19 42 42 H 1.08001 * 120.13035 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.47410 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.57833 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.17911 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.53094 * 186.67258 * 29 16 15 47 47 H 1.09003 * 109.56132 * 66.29833 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0920 1.2654 -0.5217 5 6 1.6326 2.2860 0.6705 6 7 0.5411 2.1615 1.3953 7 14 2.4859 3.9428 0.5440 8 1 3.6831 3.8179 -0.3257 9 1 1.5512 4.9375 -0.0412 10 1 2.9011 4.3904 1.8976 11 6 2.1975 -1.2686 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2656 15 6 2.2497 -4.2122 -0.0309 16 7 2.4661 -3.3964 1.1717 17 6 3.2376 -3.8500 2.1794 18 8 3.4980 -3.1247 3.1192 19 6 3.7676 -5.2304 2.1415 20 6 2.9234 -6.3184 1.9610 21 6 3.4573 -7.6042 1.9239 22 7 4.7406 -7.8247 2.0676 23 6 5.6103 -6.8282 2.2507 24 6 6.9853 -7.0858 2.4025 25 6 7.8495 -6.0513 2.5874 26 6 7.3957 -4.7344 2.6302 27 6 6.0716 -4.4470 2.4872 28 6 5.1535 -5.4875 2.2942 29 6 1.8248 -2.0737 1.2494 30 1 -0.3633 -0.0887 1.0239 31 1 -0.3634 0.9310 -0.4352 32 1 -0.3633 -0.8423 -0.5887 33 1 0.1799 2.9300 1.8642 34 1 2.0699 -1.4913 -2.1386 35 1 0.7606 -2.2913 -1.2368 36 1 3.6855 -3.1651 -1.2522 37 1 2.3722 -3.9446 -2.1670 38 1 1.2022 -4.5080 -0.0884 39 1 2.8785 -5.1015 0.0126 40 1 1.8602 -6.1680 1.8447 41 1 2.7939 -8.4438 1.7778 42 1 7.3532 -8.1008 2.3725 43 1 8.9040 -6.2540 2.7030 44 1 8.1026 -3.9315 2.7785 45 1 5.7316 -3.4224 2.5217 46 1 2.1750 -1.5507 2.1393 47 1 0.7426 -2.1950 1.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027481717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:49 Heat of formation + Delta-G solvation = 49.586134 kcal Electronic energy + Delta-G solvation = -29627.650771 eV Core-core repulsion = 25776.033215 eV Total energy + Delta-G solvation = -3851.617555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30822 -39.66603 -37.47652 -37.28173 -35.13106 -33.69316 -32.33983 -31.32076 -30.79763 -30.28843 -28.81144 -26.06151 -25.96237 -24.42419 -23.83462 -23.59003 -22.55645 -21.69177 -19.93351 -18.85761 -18.36428 -17.62383 -17.24219 -16.75496 -16.20732 -15.46495 -15.26076 -15.00233 -14.59987 -14.41936 -14.36436 -14.18597 -14.08928 -13.80063 -13.71527 -13.33449 -13.20053 -12.71422 -12.57160 -12.38355 -12.00696 -11.93434 -11.79199 -11.57941 -11.24475 -11.11204 -10.85406 -10.77290 -10.59458 -10.43107 -10.40540 -10.22592 -10.20497 -9.96764 -9.74088 -9.48648 -9.01373 -8.59505 -8.46909 -8.39858 -6.64606 -5.80219 -3.34959 0.00342 0.56860 1.61046 2.60787 2.75031 3.05508 3.35497 3.42949 3.44738 3.88132 4.01398 4.22002 4.44716 4.47649 4.50961 4.62886 4.87147 4.91134 4.95112 5.08833 5.11049 5.23811 5.27780 5.36419 5.39162 5.49514 5.54858 5.61675 5.70940 5.79692 5.82959 5.86866 5.94673 6.09154 6.10762 6.19633 6.26121 6.28144 6.34464 6.46033 6.60064 6.61692 6.74612 6.89774 6.94658 7.28572 7.50272 7.62636 7.62716 7.78781 8.17059 8.43614 9.20267 9.79097 10.34049 11.25597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.003087 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.768474 B = 9068.549789 C =10003.773460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.587 5.587 3 C -0.263 4.263 4 H 0.064 0.936 5 C 0.013 3.987 6 N -0.900 5.900 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.288 1.288 11 C 0.168 3.832 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.103 3.897 16 N -0.595 5.595 17 C 0.553 3.447 18 O -0.523 6.523 19 C -0.050 4.050 20 C -0.148 4.148 21 C 0.130 3.870 22 N -0.467 5.467 23 C 0.128 3.872 24 C -0.098 4.098 25 C -0.096 4.096 26 C -0.115 4.115 27 C -0.086 4.086 28 C -0.071 4.071 29 C 0.099 3.901 30 H 0.020 0.980 31 H 0.050 0.950 32 H -0.003 1.003 33 H 0.254 0.746 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.093 0.907 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -20.393 -2.054 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.309 5.309 3 C -0.393 4.393 4 H 0.082 0.918 5 C -0.187 4.187 6 N -0.543 5.543 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.020 4.020 16 N -0.328 5.328 17 C 0.339 3.661 18 O -0.400 6.400 19 C -0.061 4.061 20 C -0.169 4.169 21 C -0.042 4.042 22 N -0.175 5.175 23 C 0.006 3.994 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.104 4.104 28 C -0.074 4.074 29 C -0.024 4.024 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.112 0.888 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.749 -20.632 -1.469 22.088 hybrid contribution -0.163 1.771 0.101 1.782 sum 7.586 -18.860 -1.368 20.375 Atomic orbital electron populations 1.20764 0.83051 0.97178 0.97590 1.43805 1.01540 0.99945 1.85610 1.19172 1.05545 0.87701 1.26913 0.91796 1.25321 0.97783 0.99309 0.96263 1.70006 1.22144 1.29576 1.32544 0.86209 0.79116 0.83912 0.77450 1.20158 1.21555 1.21465 1.20679 0.96646 0.86358 0.90419 0.91676 1.22079 0.99644 0.94913 1.00662 1.21894 1.01108 0.97302 0.96606 1.21876 1.01459 0.93847 0.84833 1.48343 1.48126 1.19395 1.16915 1.18143 0.78910 0.85845 0.83166 1.90836 1.58098 1.56809 1.34261 1.20506 0.93408 0.94594 0.97628 1.22387 1.01282 0.92886 1.00313 1.22887 0.91518 0.95843 0.93941 1.67804 1.03538 1.34817 1.11345 1.18828 0.94224 0.87701 0.98618 1.20786 0.90356 1.00136 1.00403 1.20967 1.00124 0.92440 0.98098 1.21026 0.95788 0.96954 0.99560 1.21229 0.92946 0.99452 0.96820 1.18632 0.92623 0.94758 1.01383 1.22685 0.96668 0.80214 1.02840 0.96189 0.93126 0.98423 0.93588 0.91652 0.92170 0.91776 0.91096 0.91144 0.90375 0.83792 0.81770 0.84568 0.85120 0.85161 0.84341 0.88825 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.99 59.85 0.48 4.22 16 2 N -0.59 -14.29 2.78 -173.35 -0.48 -14.77 16 3 C -0.26 -7.15 9.46 -15.06 -0.14 -7.29 16 4 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 5 C 0.01 0.37 5.17 -17.43 -0.09 0.28 16 6 N -0.90 -25.95 11.09 55.49 0.62 -25.33 16 7 Si 0.90 21.71 29.56 -169.99 -5.02 16.68 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.17 3.36 2.75 -67.81 -0.19 3.18 16 12 H 0.06 1.40 7.89 -51.93 -0.41 0.99 16 13 C -0.13 -2.13 5.10 -26.69 -0.14 -2.27 16 14 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 15 C 0.10 1.21 5.61 -3.71 -0.02 1.19 16 16 N -0.59 -9.24 2.98 -173.64 -0.52 -9.76 16 17 C 0.55 9.13 6.55 -12.30 -0.08 9.05 16 18 O -0.52 -10.68 15.20 5.33 0.08 -10.60 16 19 C -0.05 -0.68 4.66 -104.34 -0.49 -1.17 16 20 C -0.15 -1.55 7.89 -38.96 -0.31 -1.85 16 21 C 0.13 1.24 11.14 -17.52 -0.20 1.05 16 22 N -0.47 -5.53 10.30 -11.00 -0.11 -5.64 16 23 C 0.13 1.61 6.61 -84.87 -0.56 1.05 16 24 C -0.10 -1.02 9.98 -39.43 -0.39 -1.41 16 25 C -0.10 -0.89 9.94 -39.95 -0.40 -1.28 16 26 C -0.12 -1.23 9.96 -39.88 -0.40 -1.63 16 27 C -0.09 -1.16 9.25 -39.60 -0.37 -1.52 16 28 C -0.07 -0.98 5.76 -106.52 -0.61 -1.59 16 29 C 0.10 1.88 5.81 -3.56 -0.02 1.86 16 30 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 31 H 0.05 1.30 7.23 -51.93 -0.38 0.92 16 32 H 0.00 -0.05 6.48 -51.93 -0.34 -0.39 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.81 5.39 -51.93 -0.28 0.53 16 40 H 0.14 1.20 7.78 -52.49 -0.41 0.79 16 41 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.14 2.09 6.47 -52.49 -0.34 1.75 16 46 H 0.09 2.12 7.02 -51.93 -0.36 1.76 16 47 H 0.07 1.23 7.51 -51.93 -0.39 0.84 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.48 374.15 -10.47 -42.95 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.59 Total: 0.75 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.08 Total: 0.08 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.50 Total: -55.50 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.48 -10.47 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027481717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.537 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds