Wall clock time and date at job start Sat Apr 11 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99908 * 2 1 4 4 H 1.07999 * 119.99861 * 213.89886 * 3 2 1 5 5 C 1.38814 * 120.00282 * 33.89873 * 3 2 1 6 6 N 1.31620 * 119.99620 * 5.49500 * 5 3 2 7 7 Si 1.86794 * 120.00246 * 185.49485 * 5 3 2 8 8 H 1.48497 * 109.47027 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47027 * 119.99924 * 7 5 3 10 10 H 1.48498 * 109.47304 * 239.99599 * 7 5 3 11 11 C 1.46492 * 120.00167 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.50321 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49877 * 60.00051 * 11 2 1 14 14 C 1.53041 * 109.54175 * 178.68319 * 13 11 2 15 15 C 1.53193 * 109.30945 * 61.36136 * 14 13 11 16 16 N 1.46923 * 108.89626 * 305.29638 * 15 14 13 17 17 C 1.34776 * 120.62793 * 233.67723 * 16 15 14 18 18 O 1.21543 * 119.99634 * 174.01110 * 17 16 15 19 19 C 1.47908 * 120.00331 * 354.01721 * 17 16 15 20 20 C 1.38891 * 121.10801 * 306.38234 * 19 17 16 21 21 C 1.39270 * 119.58060 * 179.68486 * 20 19 17 22 22 N 1.31002 * 121.87714 * 0.66350 * 21 20 19 23 23 C 1.33530 * 121.82785 * 359.63792 * 22 21 20 24 24 C 1.40716 * 120.96547 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.73990 * 179.97438 * 24 23 22 26 26 C 1.39356 * 121.05378 * 0.04077 * 25 24 23 27 27 C 1.36245 * 120.84031 * 359.97438 * 26 25 24 28 28 C 1.40101 * 119.64284 * 359.97438 * 27 26 25 29 29 C 1.47206 * 118.55473 * 53.53966 * 16 15 14 30 30 H 1.09002 * 109.46710 * 265.05048 * 1 2 3 31 31 H 1.09002 * 109.47244 * 25.05175 * 1 2 3 32 32 H 1.08994 * 109.46865 * 145.05046 * 1 2 3 33 33 H 0.97003 * 120.00101 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.45651 * 58.66438 * 13 11 2 35 35 H 1.08996 * 109.45887 * 298.71005 * 13 11 2 36 36 H 1.09004 * 109.49469 * 301.41908 * 14 13 11 37 37 H 1.08991 * 109.52680 * 181.33362 * 14 13 11 38 38 H 1.09002 * 109.58249 * 65.16056 * 15 14 13 39 39 H 1.08997 * 109.58127 * 185.43253 * 15 14 13 40 40 H 1.08001 * 120.21137 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.06478 * 180.32281 * 21 20 19 42 42 H 1.08001 * 120.13035 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.47410 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.57833 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.17911 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.53094 * 186.67258 * 29 16 15 47 47 H 1.09003 * 109.56132 * 66.29833 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0920 1.2654 -0.5217 5 6 1.6326 2.2860 0.6705 6 7 0.5411 2.1615 1.3953 7 14 2.4859 3.9428 0.5440 8 1 3.6831 3.8179 -0.3257 9 1 1.5512 4.9375 -0.0412 10 1 2.9011 4.3904 1.8976 11 6 2.1975 -1.2686 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2656 15 6 2.2497 -4.2122 -0.0309 16 7 2.4661 -3.3964 1.1717 17 6 3.2376 -3.8500 2.1794 18 8 3.4980 -3.1247 3.1192 19 6 3.7676 -5.2304 2.1415 20 6 2.9234 -6.3184 1.9610 21 6 3.4573 -7.6042 1.9239 22 7 4.7406 -7.8247 2.0676 23 6 5.6103 -6.8282 2.2507 24 6 6.9853 -7.0858 2.4025 25 6 7.8495 -6.0513 2.5874 26 6 7.3957 -4.7344 2.6302 27 6 6.0716 -4.4470 2.4872 28 6 5.1535 -5.4875 2.2942 29 6 1.8248 -2.0737 1.2494 30 1 -0.3633 -0.0887 1.0239 31 1 -0.3634 0.9310 -0.4352 32 1 -0.3633 -0.8423 -0.5887 33 1 0.1799 2.9300 1.8642 34 1 2.0699 -1.4913 -2.1386 35 1 0.7606 -2.2913 -1.2368 36 1 3.6855 -3.1651 -1.2522 37 1 2.3722 -3.9446 -2.1670 38 1 1.2022 -4.5080 -0.0884 39 1 2.8785 -5.1015 0.0126 40 1 1.8602 -6.1680 1.8447 41 1 2.7939 -8.4438 1.7778 42 1 7.3532 -8.1008 2.3725 43 1 8.9040 -6.2540 2.7030 44 1 8.1026 -3.9315 2.7785 45 1 5.7316 -3.4224 2.5217 46 1 2.1750 -1.5507 2.1393 47 1 0.7426 -2.1950 1.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027481717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:48 Heat of formation + Delta-G solvation = 30.189889 kcal Electronic energy + Delta-G solvation = -29628.491855 eV Core-core repulsion = 25776.033215 eV Total energy + Delta-G solvation = -3852.458640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27883 -40.86972 -38.94947 -38.11111 -36.80298 -34.76332 -33.84176 -32.90670 -31.62477 -31.26899 -30.35999 -28.03014 -27.19570 -25.60191 -25.13042 -24.62257 -23.61081 -23.09916 -21.26729 -20.17981 -19.30720 -18.81399 -18.54270 -18.22105 -17.41230 -17.01085 -16.54785 -16.22728 -15.76185 -15.63691 -15.41308 -15.33600 -15.25639 -15.10081 -14.90793 -14.59121 -14.43565 -14.25510 -13.89946 -13.80507 -13.55397 -13.00326 -12.88346 -12.82378 -12.61444 -12.55703 -12.37244 -12.28027 -12.19797 -12.15114 -11.80013 -11.77328 -11.66545 -11.41004 -11.26908 -10.66849 -10.51043 -9.83096 -9.81878 -9.32296 -8.64955 -7.90946 -5.48405 -0.88651 -0.25214 0.67809 1.39999 1.43053 1.44900 1.53098 1.77075 1.94646 2.45526 3.01161 3.14514 3.25317 3.31094 3.57636 3.61340 3.65883 3.82358 3.94922 4.00187 4.05742 4.10105 4.16785 4.20569 4.32792 4.37395 4.47378 4.53426 4.55264 4.65074 4.75625 4.79952 4.83284 4.93317 4.97232 4.99567 5.04592 5.10146 5.21634 5.31087 5.36177 5.37963 5.44367 5.45926 5.51883 5.60991 5.64702 5.81795 6.24776 6.35065 6.79939 6.89977 7.12761 7.80164 8.28284 9.12397 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.003087 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.768474 B = 9068.549789 C =10003.773460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.605 5.605 3 C -0.274 4.274 4 H 0.060 0.940 5 C -0.040 4.040 6 N -0.930 5.930 7 Si 0.966 3.034 8 H -0.267 1.267 9 H -0.285 1.285 10 H -0.293 1.293 11 C 0.167 3.833 12 H 0.038 0.962 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.099 3.901 16 N -0.592 5.592 17 C 0.553 3.447 18 O -0.578 6.578 19 C -0.078 4.078 20 C -0.127 4.127 21 C 0.136 3.864 22 N -0.474 5.474 23 C 0.110 3.890 24 C -0.097 4.097 25 C -0.092 4.092 26 C -0.107 4.107 27 C -0.123 4.123 28 C -0.088 4.088 29 C 0.116 3.884 30 H -0.006 1.006 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.251 0.749 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.171 0.829 41 H 0.210 0.790 42 H 0.160 0.840 43 H 0.169 0.831 44 H 0.147 0.853 45 H 0.105 0.895 46 H 0.044 0.956 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -24.151 -3.761 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.328 5.328 3 C -0.404 4.404 4 H 0.078 0.922 5 C -0.237 4.237 6 N -0.575 5.575 7 Si 0.794 3.206 8 H -0.191 1.191 9 H -0.211 1.211 10 H -0.220 1.220 11 C 0.059 3.941 12 H 0.057 0.943 13 C -0.160 4.160 14 C -0.161 4.161 15 C -0.021 4.021 16 N -0.324 5.324 17 C 0.341 3.659 18 O -0.458 6.458 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.036 4.036 22 N -0.182 5.182 23 C -0.011 4.011 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.091 4.091 29 C -0.008 4.008 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.188 0.812 41 H 0.227 0.773 42 H 0.177 0.823 43 H 0.186 0.814 44 H 0.165 0.835 45 H 0.123 0.877 46 H 0.062 0.938 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.368 -24.441 -3.223 26.034 hybrid contribution -0.296 2.833 0.632 2.918 sum 8.072 -21.608 -2.591 23.212 Atomic orbital electron populations 1.20515 0.82748 0.97266 0.96431 1.44009 1.01983 1.00747 1.86011 1.19444 1.05402 0.89190 1.26377 0.92213 1.26043 0.98608 1.02655 0.96381 1.70156 1.23491 1.30159 1.33686 0.85232 0.78413 0.79896 0.77092 1.19088 1.21097 1.21987 1.20785 0.94739 0.85548 0.93001 0.94325 1.21904 1.00811 0.95925 0.97386 1.21879 0.99809 0.95726 0.98681 1.22220 1.03800 0.93682 0.82444 1.48323 1.47522 1.18265 1.18247 1.18669 0.78002 0.86918 0.82308 1.90796 1.59885 1.58697 1.36455 1.20270 0.94153 0.93279 1.01195 1.22737 1.02076 0.92234 0.97678 1.23595 0.91300 0.96565 0.92117 1.67892 1.04470 1.34428 1.11459 1.19114 0.95489 0.87128 0.99362 1.21158 0.89616 1.01549 0.99255 1.21326 1.01896 0.91118 0.96783 1.21325 0.94874 0.98631 0.97626 1.21106 0.94632 0.98189 1.00275 1.18772 0.92713 0.95488 1.02088 1.22116 0.96702 0.81921 1.00109 0.98758 0.95827 0.94510 0.94030 0.92376 0.91057 0.92883 0.87034 0.88148 0.88170 0.81189 0.77343 0.82263 0.81375 0.83491 0.87671 0.93763 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.46 7.99 127.77 1.02 9.48 16 2 N -0.60 -30.50 2.78 -702.36 -1.95 -32.45 16 3 C -0.27 -15.45 9.46 84.03 0.79 -14.65 16 4 H 0.06 3.35 7.83 -2.91 -0.02 3.32 16 5 C -0.04 -2.31 5.17 84.86 0.44 -1.87 16 6 N -0.93 -55.94 11.09 21.65 0.24 -55.70 16 7 Si 0.97 46.05 29.56 68.60 2.03 48.07 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 11 C 0.17 6.91 2.75 45.07 0.12 7.04 16 12 H 0.04 1.77 7.89 -2.39 -0.02 1.75 16 13 C -0.12 -3.69 5.10 30.62 0.16 -3.53 16 14 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 15 C 0.10 2.07 5.61 86.36 0.48 2.55 16 16 N -0.59 -18.53 2.98 -821.54 -2.45 -20.98 16 17 C 0.55 19.07 6.55 86.81 0.57 19.64 16 18 O -0.58 -25.80 15.20 -3.85 -0.06 -25.86 16 19 C -0.08 -2.09 4.66 -19.68 -0.09 -2.18 16 20 C -0.13 -2.28 7.89 22.67 0.18 -2.10 16 21 C 0.14 2.06 11.14 85.06 0.95 3.01 16 22 N -0.47 -9.78 10.30 -188.73 -1.94 -11.72 16 23 C 0.11 2.58 6.61 40.35 0.27 2.85 16 24 C -0.10 -1.78 9.98 22.37 0.22 -1.55 16 25 C -0.09 -1.47 9.94 22.03 0.22 -1.26 16 26 C -0.11 -2.25 9.96 22.07 0.22 -2.03 16 27 C -0.12 -3.52 9.25 22.26 0.21 -3.31 16 28 C -0.09 -2.43 5.76 -21.10 -0.12 -2.55 16 29 C 0.12 4.62 5.81 86.31 0.50 5.12 16 30 H -0.01 -0.31 7.74 -2.39 -0.02 -0.33 16 31 H 0.02 1.23 7.23 -2.39 -0.02 1.21 16 32 H 0.04 1.46 6.48 -2.39 -0.02 1.44 16 33 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.04 6.75 -2.39 -0.02 2.02 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.72 5.39 -2.39 -0.01 1.71 16 40 H 0.17 2.10 7.78 -2.91 -0.02 2.08 16 41 H 0.21 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 45 H 0.11 3.62 6.47 -2.91 -0.02 3.61 16 46 H 0.04 2.19 7.02 -2.39 -0.02 2.17 16 47 H 0.07 2.69 7.51 -2.39 -0.02 2.67 16 Total: -1.00 -78.13 374.15 3.17 -74.96 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.98 Total: 11.54 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.32 Total: 12.14 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.11 Total: -120.86 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.13 3.17 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027481717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.152 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds