Wall clock time and date at job start Sat Apr 11 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99788 * 2 1 4 4 H 1.07995 * 119.99962 * 148.98611 * 3 2 1 5 5 C 1.38810 * 119.99978 * 328.98858 * 3 2 1 6 6 N 1.31619 * 120.00318 * 2.64919 * 5 3 2 7 7 Si 1.86804 * 119.99829 * 182.64693 * 5 3 2 8 8 H 1.48502 * 109.47235 * 90.00096 * 7 5 3 9 9 H 1.48501 * 109.47261 * 210.00012 * 7 5 3 10 10 H 1.48501 * 109.47238 * 329.99981 * 7 5 3 11 11 C 1.46492 * 120.00043 * 179.72586 * 2 1 3 12 12 H 1.08999 * 109.49814 * 180.21276 * 11 2 1 13 13 C 1.53047 * 109.49836 * 300.27566 * 11 2 1 14 14 C 1.53040 * 109.53741 * 181.31601 * 13 11 2 15 15 C 1.53183 * 109.31398 * 298.63536 * 14 13 11 16 16 N 1.46922 * 108.77797 * 54.63606 * 15 14 13 17 17 C 1.34780 * 120.63131 * 126.41089 * 16 15 14 18 18 O 1.21601 * 119.99968 * 176.15947 * 17 16 15 19 19 C 1.47429 * 119.99924 * 356.16204 * 17 16 15 20 20 C 1.38743 * 120.33210 * 52.85515 * 19 17 16 21 21 C 1.38879 * 120.72202 * 179.69810 * 20 19 17 22 22 C 1.36345 * 121.05542 * 0.60293 * 21 20 19 23 23 C 1.40443 * 120.08959 * 359.67619 * 22 21 20 24 24 C 1.40805 * 121.26457 * 180.02562 * 23 22 21 25 25 C 1.36633 * 118.15274 * 180.02562 * 24 23 22 26 26 C 1.39235 * 119.90799 * 359.97438 * 25 24 23 27 27 N 1.31227 * 121.69765 * 359.97438 * 26 25 24 28 28 C 1.33351 * 121.35352 * 0.02562 * 27 26 25 29 29 C 1.46925 * 118.73820 * 306.39108 * 16 15 14 30 30 H 1.09008 * 109.46780 * 94.10908 * 1 2 3 31 31 H 1.08997 * 109.47095 * 214.10331 * 1 2 3 32 32 H 1.09002 * 109.46915 * 334.11018 * 1 2 3 33 33 H 0.97005 * 120.00157 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.45769 * 301.34104 * 13 11 2 35 35 H 1.09001 * 109.45621 * 61.29175 * 13 11 2 36 36 H 1.08998 * 109.49668 * 58.59205 * 14 13 11 37 37 H 1.08998 * 109.49338 * 178.68150 * 14 13 11 38 38 H 1.09003 * 109.58696 * 174.42771 * 15 14 13 39 39 H 1.09004 * 109.58481 * 294.84812 * 15 14 13 40 40 H 1.07997 * 119.64195 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.46916 * 180.32795 * 21 20 19 42 42 H 1.08000 * 119.95218 * 179.70543 * 22 21 20 43 43 H 1.07997 * 120.92240 * 0.02562 * 24 23 22 44 44 H 1.08003 * 120.04770 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.14863 * 179.97438 * 26 25 24 46 46 H 1.08999 * 109.59139 * 293.82097 * 29 16 15 47 47 H 1.09009 * 109.58560 * 173.39283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1139 1.2528 0.4819 5 6 1.6044 2.3021 -0.6194 6 7 0.4068 2.2349 -1.1612 7 14 2.5704 3.8998 -0.6838 8 1 3.3984 3.9282 -1.9162 9 1 1.6284 5.0477 -0.6937 10 1 3.4522 3.9934 0.5073 11 6 2.1975 -1.2686 0.0061 12 1 3.2693 -1.0699 0.0089 13 6 1.8230 -2.0688 1.2558 14 6 2.6123 -3.3797 1.2798 15 6 2.2496 -4.2121 0.0462 16 7 2.4703 -3.3969 -1.1561 17 6 3.2450 -3.8511 -2.1611 18 8 3.3637 -3.1982 -3.1800 19 6 3.9483 -5.1397 -2.0251 20 6 3.2493 -6.2861 -1.6759 21 6 3.9026 -7.5053 -1.5516 22 6 5.2467 -7.6071 -1.7567 23 6 5.9937 -6.4704 -2.1062 24 6 7.3827 -6.5473 -2.3243 25 6 8.0468 -5.4018 -2.6611 26 6 7.3478 -4.2035 -2.7800 27 7 6.0531 -4.1373 -2.5767 28 6 5.3467 -5.2188 -2.2454 29 6 1.8300 -2.0773 -1.2421 30 1 -0.3633 -0.0736 -1.0251 31 1 -0.3633 -0.8509 0.5762 32 1 -0.3633 0.9245 0.4487 33 1 0.0259 3.0149 -1.5943 34 1 2.0609 -1.4852 2.1453 35 1 0.7554 -2.2878 1.2403 36 1 3.6802 -3.1616 1.2705 37 1 2.3626 -3.9382 2.1819 38 1 2.8803 -5.1003 0.0063 39 1 1.2018 -4.5077 0.1000 40 1 2.1846 -6.2307 -1.5031 41 1 3.3377 -8.3859 -1.2839 42 1 5.7374 -8.5633 -1.6506 43 1 7.9084 -7.4858 -2.2280 44 1 9.1125 -5.4257 -2.8349 45 1 7.8851 -3.3053 -3.0464 46 1 0.7480 -2.1986 -1.2933 47 1 2.1840 -1.5567 -2.1320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:52 Heat of formation + Delta-G solvation = 56.409260 kcal Electronic energy + Delta-G solvation = -29669.018519 eV Core-core repulsion = 25817.696837 eV Total energy + Delta-G solvation = -3851.321682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19989 -39.60405 -37.39010 -37.02146 -34.97512 -33.67273 -32.27755 -31.23103 -30.81388 -30.45076 -28.55539 -25.93263 -25.59239 -24.45068 -23.91756 -23.47139 -22.64337 -21.54695 -19.73025 -18.63845 -18.60990 -17.37319 -17.05163 -16.68878 -16.33190 -15.48884 -15.15167 -15.02094 -14.65513 -14.35677 -14.15377 -14.08151 -13.90650 -13.62821 -13.45418 -13.24031 -13.12407 -12.59897 -12.39200 -12.34794 -12.27301 -11.94147 -11.77877 -11.60316 -11.11691 -10.95372 -10.76431 -10.73458 -10.52522 -10.29200 -10.26426 -10.10880 -9.88791 -9.76816 -9.65405 -9.32073 -9.01501 -8.49024 -8.43869 -8.19408 -6.58717 -5.71708 -3.21242 0.01262 0.57768 1.62646 2.60003 2.99969 3.34181 3.43732 3.49609 3.49987 3.92365 4.08329 4.28063 4.50331 4.52380 4.53710 4.63874 4.72730 4.83994 4.99983 5.06501 5.14630 5.21876 5.35005 5.44252 5.47429 5.61565 5.62088 5.66265 5.69762 5.75891 5.83495 5.96394 5.99683 6.05300 6.09981 6.21487 6.23511 6.32015 6.47054 6.53735 6.58948 6.80501 6.88104 7.03079 7.09372 7.47110 7.74118 7.79318 7.84674 7.87195 8.49648 8.54424 9.30865 9.90118 10.43017 11.34616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.003223 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.150205 B = 8684.707798 C = 9779.776293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.591 5.591 3 C -0.258 4.258 4 H 0.065 0.935 5 C 0.011 3.989 6 N -0.904 5.904 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.100 3.900 16 N -0.601 5.601 17 C 0.561 3.439 18 O -0.515 6.515 19 C -0.089 4.089 20 C -0.074 4.074 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.108 4.108 24 C -0.059 4.059 25 C -0.174 4.174 26 C 0.135 3.865 27 N -0.453 5.453 28 C 0.158 3.842 29 C 0.102 3.898 30 H 0.016 0.984 31 H -0.008 1.008 32 H 0.060 0.940 33 H 0.253 0.747 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.161 0.839 46 H 0.061 0.939 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -24.078 2.093 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.388 4.388 4 H 0.083 0.917 5 C -0.188 4.188 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.169 4.169 15 C -0.023 4.023 16 N -0.335 5.335 17 C 0.348 3.652 18 O -0.390 6.390 19 C -0.093 4.093 20 C -0.094 4.094 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.110 4.110 24 C -0.086 4.086 25 C -0.194 4.194 26 C -0.038 4.038 27 N -0.159 5.159 28 C 0.036 3.964 29 C -0.021 4.021 30 H 0.034 0.966 31 H 0.011 0.989 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.080 0.920 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.620 -22.743 1.396 24.733 hybrid contribution 0.922 0.061 -0.040 0.925 sum 10.541 -22.682 1.356 25.049 Atomic orbital electron populations 1.20820 0.82754 0.97238 0.97478 1.43833 1.01737 0.99940 1.85821 1.19171 1.03004 0.87335 1.29299 0.91682 1.25263 0.96969 0.99123 0.97457 1.70030 1.15179 1.29312 1.40292 0.86288 0.79381 0.83036 0.78044 1.21214 1.21695 1.20478 1.20657 0.96528 0.86268 0.90619 0.91760 1.22071 0.99596 0.94974 1.00591 1.21892 1.01037 0.97292 0.96689 1.21959 1.01120 0.94204 0.85065 1.48193 1.48697 1.19274 1.17351 1.17891 0.78788 0.84800 0.83760 1.90814 1.62162 1.57442 1.28618 1.19940 0.92209 0.95090 1.02015 1.21434 1.00568 0.91486 0.95959 1.20823 0.94723 0.97603 1.00692 1.21091 0.94253 0.97293 0.97486 1.18798 0.94744 0.94487 1.02961 1.21452 0.92554 0.99163 0.95381 1.21949 1.01768 0.93836 1.01861 1.23131 0.89878 0.97780 0.92968 1.68134 1.07897 1.29900 1.10013 1.18567 0.92661 0.88668 0.96524 1.22500 0.96551 0.80616 1.02435 0.96598 0.98940 0.92135 0.93635 0.91835 0.92229 0.91894 0.91376 0.90002 0.91417 0.84430 0.84806 0.84969 0.84277 0.84376 0.82167 0.92048 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 7.97 59.85 0.48 4.50 16 2 N -0.59 -15.16 2.81 -173.34 -0.49 -15.65 16 3 C -0.26 -7.31 9.50 -15.06 -0.14 -7.46 16 4 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 5 C 0.01 0.31 5.31 -17.43 -0.09 0.22 16 6 N -0.90 -26.81 10.54 55.49 0.58 -26.22 16 7 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 C 0.17 3.62 2.75 -67.81 -0.19 3.44 16 12 H 0.06 1.49 7.89 -51.93 -0.41 1.08 16 13 C -0.13 -2.29 5.10 -26.69 -0.14 -2.43 16 14 C -0.13 -1.77 6.08 -26.62 -0.16 -1.94 16 15 C 0.10 1.30 5.46 -3.72 -0.02 1.28 16 16 N -0.60 -10.43 2.97 -174.04 -0.52 -10.95 16 17 C 0.56 10.49 6.89 -12.52 -0.09 10.40 16 18 O -0.52 -11.92 16.16 5.28 0.09 -11.83 16 19 C -0.09 -1.32 4.96 -104.62 -0.52 -1.84 16 20 C -0.07 -0.79 7.37 -39.16 -0.29 -1.08 16 21 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 22 C -0.08 -0.67 9.75 -39.43 -0.38 -1.06 16 23 C -0.11 -1.18 5.74 -106.82 -0.61 -1.79 16 24 C -0.06 -0.50 9.90 -39.19 -0.39 -0.89 16 25 C -0.17 -1.50 10.03 -39.79 -0.40 -1.90 16 26 C 0.14 1.60 11.15 -17.44 -0.19 1.41 16 27 N -0.45 -7.36 9.52 -10.76 -0.10 -7.46 16 28 C 0.16 2.35 6.60 -84.58 -0.56 1.79 16 29 C 0.10 2.12 5.78 -3.71 -0.02 2.10 16 30 H 0.02 0.42 7.80 -51.92 -0.40 0.02 16 31 H -0.01 -0.17 6.46 -51.93 -0.34 -0.50 16 32 H 0.06 1.64 6.83 -51.93 -0.35 1.29 16 33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.91 4.68 -51.93 -0.24 0.66 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.14 1.23 7.24 -52.49 -0.38 0.85 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 46 H 0.06 1.26 7.52 -51.93 -0.39 0.87 16 47 H 0.09 2.25 7.03 -51.92 -0.36 1.88 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -35.95 374.30 -10.52 -46.46 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.58 Total: -0.81 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -4.11 Total: 3.39 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.52 Total: -60.28 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.95 -10.52 -46.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.872 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds