Wall clock time and date at job start Sat Apr 11 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99788 * 2 1 4 4 H 1.07995 * 119.99962 * 148.98611 * 3 2 1 5 5 C 1.38810 * 119.99978 * 328.98858 * 3 2 1 6 6 N 1.31619 * 120.00318 * 2.64919 * 5 3 2 7 7 Si 1.86804 * 119.99829 * 182.64693 * 5 3 2 8 8 H 1.48502 * 109.47235 * 90.00096 * 7 5 3 9 9 H 1.48501 * 109.47261 * 210.00012 * 7 5 3 10 10 H 1.48501 * 109.47238 * 329.99981 * 7 5 3 11 11 C 1.46492 * 120.00043 * 179.72586 * 2 1 3 12 12 H 1.08999 * 109.49814 * 180.21276 * 11 2 1 13 13 C 1.53047 * 109.49836 * 300.27566 * 11 2 1 14 14 C 1.53040 * 109.53741 * 181.31601 * 13 11 2 15 15 C 1.53183 * 109.31398 * 298.63536 * 14 13 11 16 16 N 1.46922 * 108.77797 * 54.63606 * 15 14 13 17 17 C 1.34780 * 120.63131 * 126.41089 * 16 15 14 18 18 O 1.21601 * 119.99968 * 176.15947 * 17 16 15 19 19 C 1.47429 * 119.99924 * 356.16204 * 17 16 15 20 20 C 1.38743 * 120.33210 * 52.85515 * 19 17 16 21 21 C 1.38879 * 120.72202 * 179.69810 * 20 19 17 22 22 C 1.36345 * 121.05542 * 0.60293 * 21 20 19 23 23 C 1.40443 * 120.08959 * 359.67619 * 22 21 20 24 24 C 1.40805 * 121.26457 * 180.02562 * 23 22 21 25 25 C 1.36633 * 118.15274 * 180.02562 * 24 23 22 26 26 C 1.39235 * 119.90799 * 359.97438 * 25 24 23 27 27 N 1.31227 * 121.69765 * 359.97438 * 26 25 24 28 28 C 1.33351 * 121.35352 * 0.02562 * 27 26 25 29 29 C 1.46925 * 118.73820 * 306.39108 * 16 15 14 30 30 H 1.09008 * 109.46780 * 94.10908 * 1 2 3 31 31 H 1.08997 * 109.47095 * 214.10331 * 1 2 3 32 32 H 1.09002 * 109.46915 * 334.11018 * 1 2 3 33 33 H 0.97005 * 120.00157 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.45769 * 301.34104 * 13 11 2 35 35 H 1.09001 * 109.45621 * 61.29175 * 13 11 2 36 36 H 1.08998 * 109.49668 * 58.59205 * 14 13 11 37 37 H 1.08998 * 109.49338 * 178.68150 * 14 13 11 38 38 H 1.09003 * 109.58696 * 174.42771 * 15 14 13 39 39 H 1.09004 * 109.58481 * 294.84812 * 15 14 13 40 40 H 1.07997 * 119.64195 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.46916 * 180.32795 * 21 20 19 42 42 H 1.08000 * 119.95218 * 179.70543 * 22 21 20 43 43 H 1.07997 * 120.92240 * 0.02562 * 24 23 22 44 44 H 1.08003 * 120.04770 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.14863 * 179.97438 * 26 25 24 46 46 H 1.08999 * 109.59139 * 293.82097 * 29 16 15 47 47 H 1.09009 * 109.58560 * 173.39283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1139 1.2528 0.4819 5 6 1.6044 2.3021 -0.6194 6 7 0.4068 2.2349 -1.1612 7 14 2.5704 3.8998 -0.6838 8 1 3.3984 3.9282 -1.9162 9 1 1.6284 5.0477 -0.6937 10 1 3.4522 3.9934 0.5073 11 6 2.1975 -1.2686 0.0061 12 1 3.2693 -1.0699 0.0089 13 6 1.8230 -2.0688 1.2558 14 6 2.6123 -3.3797 1.2798 15 6 2.2496 -4.2121 0.0462 16 7 2.4703 -3.3969 -1.1561 17 6 3.2450 -3.8511 -2.1611 18 8 3.3637 -3.1982 -3.1800 19 6 3.9483 -5.1397 -2.0251 20 6 3.2493 -6.2861 -1.6759 21 6 3.9026 -7.5053 -1.5516 22 6 5.2467 -7.6071 -1.7567 23 6 5.9937 -6.4704 -2.1062 24 6 7.3827 -6.5473 -2.3243 25 6 8.0468 -5.4018 -2.6611 26 6 7.3478 -4.2035 -2.7800 27 7 6.0531 -4.1373 -2.5767 28 6 5.3467 -5.2188 -2.2454 29 6 1.8300 -2.0773 -1.2421 30 1 -0.3633 -0.0736 -1.0251 31 1 -0.3633 -0.8509 0.5762 32 1 -0.3633 0.9245 0.4487 33 1 0.0259 3.0149 -1.5943 34 1 2.0609 -1.4852 2.1453 35 1 0.7554 -2.2878 1.2403 36 1 3.6802 -3.1616 1.2705 37 1 2.3626 -3.9382 2.1819 38 1 2.8803 -5.1003 0.0063 39 1 1.2018 -4.5077 0.1000 40 1 2.1846 -6.2307 -1.5031 41 1 3.3377 -8.3859 -1.2839 42 1 5.7374 -8.5633 -1.6506 43 1 7.9084 -7.4858 -2.2280 44 1 9.1125 -5.4257 -2.8349 45 1 7.8851 -3.3053 -3.0464 46 1 0.7480 -2.1986 -1.2933 47 1 2.1840 -1.5567 -2.1320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:52 Heat of formation + Delta-G solvation = 32.707773 kcal Electronic energy + Delta-G solvation = -29670.046293 eV Core-core repulsion = 25817.696837 eV Total energy + Delta-G solvation = -3852.349456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10791 -40.88140 -38.87652 -37.95330 -36.75310 -34.57566 -33.91090 -32.86467 -31.65951 -31.42964 -30.15439 -28.06338 -26.84736 -25.43265 -25.30013 -24.47665 -23.76749 -23.04535 -21.13939 -20.06821 -19.38942 -18.86980 -18.34322 -17.88599 -17.49642 -17.02754 -16.66208 -16.17009 -15.78417 -15.60677 -15.37032 -15.30536 -15.23197 -14.94166 -14.73277 -14.43096 -14.26504 -13.97770 -13.86575 -13.77389 -13.53918 -13.09919 -13.02408 -12.83236 -12.73018 -12.51446 -12.30684 -12.23902 -12.16398 -12.12758 -11.77822 -11.71496 -11.51077 -11.41266 -11.00748 -10.65616 -10.31123 -9.78064 -9.73503 -9.23633 -8.68198 -7.92159 -5.44131 -0.74820 -0.17485 0.82482 1.39286 1.43379 1.50646 1.62443 1.88603 2.10367 2.45354 3.09561 3.24879 3.29326 3.40057 3.60503 3.79651 3.80848 3.93360 3.96829 4.04439 4.05232 4.09574 4.18828 4.22364 4.32658 4.44085 4.50466 4.55829 4.64107 4.71424 4.77059 4.84278 4.91390 4.94913 5.01237 5.01793 5.08366 5.11214 5.24960 5.26562 5.37346 5.38034 5.46729 5.53156 5.57880 5.59977 5.70244 5.85611 6.33540 6.40646 7.02369 7.12096 7.15261 7.81002 8.27294 9.12341 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.003223 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.150205 B = 8684.707798 C = 9779.776293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.274 4.274 4 H 0.061 0.939 5 C -0.043 4.043 6 N -0.932 5.932 7 Si 0.967 3.033 8 H -0.291 1.291 9 H -0.286 1.286 10 H -0.266 1.266 11 C 0.169 3.831 12 H 0.034 0.966 13 C -0.120 4.120 14 C -0.121 4.121 15 C 0.096 3.904 16 N -0.601 5.601 17 C 0.557 3.443 18 O -0.582 6.582 19 C -0.139 4.139 20 C -0.054 4.054 21 C -0.120 4.120 22 C -0.059 4.059 23 C -0.125 4.125 24 C -0.045 4.045 25 C -0.176 4.176 26 C 0.119 3.881 27 N -0.527 5.527 28 C 0.128 3.872 29 C 0.119 3.881 30 H -0.012 1.012 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.251 0.749 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.188 0.812 44 H 0.176 0.824 45 H 0.165 0.835 46 H 0.064 0.936 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.615 -29.266 4.265 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.404 4.404 4 H 0.079 0.921 5 C -0.239 4.239 6 N -0.577 5.577 7 Si 0.794 3.206 8 H -0.218 1.218 9 H -0.212 1.212 10 H -0.191 1.191 11 C 0.061 3.939 12 H 0.052 0.948 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.346 3.654 18 O -0.462 6.462 19 C -0.143 4.143 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.077 4.077 23 C -0.127 4.127 24 C -0.070 4.070 25 C -0.196 4.196 26 C -0.052 4.052 27 N -0.236 5.236 28 C 0.006 3.994 29 C -0.006 4.006 30 H 0.007 0.993 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.172 0.828 41 H 0.197 0.803 42 H 0.197 0.803 43 H 0.205 0.795 44 H 0.193 0.807 45 H 0.182 0.818 46 H 0.082 0.918 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.998 -27.986 3.622 30.287 hybrid contribution 0.594 1.539 -0.729 1.804 sum 11.593 -26.447 2.892 29.021 Atomic orbital electron populations 1.20538 0.82454 0.97376 0.96153 1.44044 1.02176 1.00722 1.86250 1.19455 1.02976 0.88783 1.29172 0.92118 1.26010 0.97923 1.02421 0.97505 1.70192 1.16384 1.29947 1.41201 0.85284 0.78086 0.79193 0.77997 1.21766 1.21152 1.19093 1.20751 0.94413 0.85541 0.93191 0.94784 1.21898 1.00774 0.96089 0.97195 1.21874 0.99508 0.95659 0.98940 1.22333 1.03460 0.94193 0.82481 1.48237 1.48138 1.18096 1.18879 1.18690 0.77943 0.86025 0.82717 1.90750 1.64176 1.60006 1.31290 1.19714 0.92796 0.94063 1.07694 1.21755 1.01227 0.91119 0.93287 1.21289 0.95099 0.97562 0.99825 1.21678 0.94306 0.97844 0.93891 1.19163 0.96261 0.93823 1.03452 1.22032 0.91568 1.00729 0.92679 1.22260 1.03376 0.92614 1.01315 1.23496 0.89216 0.99867 0.92626 1.68032 1.10046 1.32296 1.13178 1.18882 0.92809 0.90109 0.97615 1.21936 0.96471 0.82540 0.99681 0.99320 0.95125 0.94745 0.94008 0.92448 0.91126 0.93291 0.86842 0.87281 0.88573 0.82814 0.80328 0.80269 0.79481 0.80695 0.81780 0.91806 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.27 7.97 127.77 1.02 10.29 16 2 N -0.61 -32.83 2.81 -702.33 -1.97 -34.80 16 3 C -0.27 -16.27 9.50 84.03 0.80 -15.47 16 4 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 5 C -0.04 -2.55 5.31 84.86 0.45 -2.10 16 6 N -0.93 -57.87 10.54 21.65 0.23 -57.65 16 7 Si 0.97 47.99 29.55 68.60 2.03 50.01 16 8 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 C 0.17 7.67 2.75 45.07 0.12 7.79 16 12 H 0.03 1.71 7.89 -2.39 -0.02 1.69 16 13 C -0.12 -4.07 5.10 30.62 0.16 -3.91 16 14 C -0.12 -3.03 6.08 30.67 0.19 -2.84 16 15 C 0.10 2.30 5.46 86.36 0.47 2.77 16 16 N -0.60 -21.74 2.97 -822.79 -2.45 -24.19 16 17 C 0.56 22.37 6.89 86.66 0.60 22.97 16 18 O -0.58 -30.07 16.16 -4.03 -0.07 -30.13 16 19 C -0.14 -4.19 4.96 -19.86 -0.10 -4.29 16 20 C -0.05 -1.00 7.37 22.54 0.17 -0.83 16 21 C -0.12 -1.28 9.93 21.98 0.22 -1.06 16 22 C -0.06 -0.63 9.75 22.37 0.22 -0.41 16 23 C -0.12 -2.37 5.74 -21.29 -0.12 -2.50 16 24 C -0.04 -0.58 9.90 22.52 0.22 -0.35 16 25 C -0.18 -2.69 10.03 22.13 0.22 -2.47 16 26 C 0.12 2.99 11.15 85.02 0.95 3.94 16 27 N -0.53 -18.53 9.52 -187.96 -1.79 -20.32 16 28 C 0.13 3.86 6.60 40.61 0.27 4.13 16 29 C 0.12 5.30 5.78 86.36 0.50 5.80 16 30 H -0.01 -0.65 7.80 -2.38 -0.02 -0.67 16 31 H 0.03 1.32 6.46 -2.39 -0.02 1.31 16 32 H 0.03 1.92 6.83 -2.39 -0.02 1.91 16 33 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 2.25 6.73 -2.39 -0.02 2.23 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.11 2.08 4.68 -2.39 -0.01 2.07 16 39 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.15 2.22 7.24 -2.91 -0.02 2.19 16 41 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 42 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 43 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 46 H 0.06 2.77 7.52 -2.39 -0.02 2.75 16 47 H 0.04 2.05 7.03 -2.38 -0.02 2.03 16 Total: -1.00 -91.52 374.30 3.31 -88.22 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.98 Total: 7.40 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.34 Total: 21.45 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -5.98 Total: -136.95 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.07 Total: -30.13 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -91.52 3.31 -88.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.926 kcal (2) G-P(sol) polarization free energy of solvation -91.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds