Wall clock time and date at job start Sat Apr 11 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99661 * 2 1 4 4 H 1.08003 * 119.99824 * 204.57060 * 3 2 1 5 5 C 1.38814 * 120.00141 * 24.57448 * 3 2 1 6 6 N 1.31614 * 120.00018 * 14.27198 * 5 3 2 7 7 Si 1.86802 * 119.99931 * 194.27450 * 5 3 2 8 8 H 1.48499 * 109.46941 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46992 * 119.99869 * 7 5 3 10 10 H 1.48491 * 109.46965 * 240.00166 * 7 5 3 11 11 C 1.46493 * 120.00137 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.50005 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.50033 * 59.99871 * 11 2 1 14 14 C 1.53042 * 109.53728 * 178.68408 * 13 11 2 15 15 C 1.53192 * 109.31344 * 61.36865 * 14 13 11 16 16 N 1.46932 * 108.77308 * 305.35769 * 15 14 13 17 17 C 1.34770 * 120.63111 * 233.60967 * 16 15 14 18 18 O 1.21611 * 119.99509 * 183.50316 * 17 16 15 19 19 C 1.47428 * 120.00356 * 3.50579 * 17 16 15 20 20 C 1.38750 * 120.33228 * 325.47995 * 19 17 16 21 21 C 1.38864 * 120.72217 * 179.97438 * 20 19 17 22 22 C 1.36350 * 121.06247 * 359.97438 * 21 20 19 23 23 C 1.40435 * 120.08384 * 0.02811 * 22 21 20 24 24 C 1.40806 * 121.27068 * 179.97438 * 23 22 21 25 25 C 1.36628 * 118.15585 * 179.97438 * 24 23 22 26 26 C 1.39228 * 119.91322 * 0.02562 * 25 24 23 27 27 N 1.31227 * 121.69280 * 0.02562 * 26 25 24 28 28 C 1.33350 * 121.35027 * 359.65441 * 27 26 25 29 29 C 1.46927 * 118.73307 * 53.61386 * 16 15 14 30 30 H 1.09001 * 109.46900 * 271.17973 * 1 2 3 31 31 H 1.08996 * 109.47251 * 31.18298 * 1 2 3 32 32 H 1.09000 * 109.47095 * 151.18516 * 1 2 3 33 33 H 0.97002 * 120.00181 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.45497 * 298.70482 * 13 11 2 35 35 H 1.08995 * 109.46000 * 58.66272 * 13 11 2 36 36 H 1.09005 * 109.49515 * 181.31413 * 14 13 11 37 37 H 1.08995 * 109.49691 * 301.37945 * 14 13 11 38 38 H 1.08994 * 109.59212 * 65.14841 * 15 14 13 39 39 H 1.09003 * 109.58429 * 185.43866 * 15 14 13 40 40 H 1.07999 * 119.63660 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.46954 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.95545 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.92115 * 359.97438 * 24 23 22 44 44 H 1.08007 * 120.04065 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.15382 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.58522 * 186.60329 * 29 16 15 47 47 H 1.08995 * 109.59167 * 66.17912 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1563 1.2284 -0.3889 5 6 1.5498 2.3337 0.4999 6 7 0.4534 2.2420 1.2222 7 14 2.2988 4.0083 0.1475 8 1 3.5203 3.8399 -0.6800 9 1 1.3156 4.8461 -0.5850 10 1 2.6564 4.6699 1.4279 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6177 -3.3822 -1.2684 15 6 2.2497 -4.2123 -0.0346 16 7 2.4655 -3.3946 1.1670 17 6 3.2362 -3.8467 2.1759 18 8 3.3557 -3.1887 3.1916 19 6 3.9346 -5.1388 2.0482 20 6 3.3479 -6.1868 1.3535 21 6 3.9986 -7.4070 1.2278 22 6 5.2284 -7.6088 1.7810 23 6 5.8584 -6.5749 2.4927 24 6 7.1277 -6.7561 3.0746 25 6 7.6819 -5.7072 3.7524 26 6 6.9913 -4.5024 3.8520 27 7 5.8080 -4.3389 3.3087 28 6 5.2152 -5.3210 2.6287 29 6 1.8248 -2.0748 1.2477 30 1 -0.3633 0.0212 1.0275 31 1 -0.3633 0.8791 -0.5321 32 1 -0.3633 -0.9004 -0.4953 33 1 0.0340 3.0440 1.5712 34 1 0.7605 -2.2903 -1.2387 35 1 2.0698 -1.4896 -2.1398 36 1 2.3716 -3.9426 -2.1704 37 1 3.6855 -3.1640 -1.2555 38 1 1.2022 -4.5079 -0.0921 39 1 2.8786 -5.1016 0.0084 40 1 2.3744 -6.0519 0.9056 41 1 3.5234 -8.2089 0.6822 42 1 5.7185 -8.5650 1.6719 43 1 7.6487 -7.6981 2.9876 44 1 8.6544 -5.8126 4.2103 45 1 7.4411 -3.6812 4.3903 46 1 2.1750 -1.5525 2.1379 47 1 0.7427 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:57 Heat of formation + Delta-G solvation = 75.714836 kcal Electronic energy + Delta-G solvation = -29603.045517 eV Core-core repulsion = 25752.560988 eV Total energy + Delta-G solvation = -3850.484530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24077 -39.65257 -37.34953 -37.09661 -35.02672 -33.66052 -32.32135 -31.29048 -30.80627 -30.45429 -28.52641 -25.95028 -25.75212 -24.38848 -24.07523 -23.36928 -22.62959 -21.57848 -19.76694 -18.80630 -18.65259 -17.24016 -17.01907 -16.67268 -16.32144 -15.44604 -15.19730 -15.05543 -14.67332 -14.27972 -14.17736 -14.14193 -13.91233 -13.55389 -13.48808 -13.22828 -13.13255 -12.63192 -12.46064 -12.31938 -12.20420 -11.92403 -11.81540 -11.63125 -11.01918 -10.94921 -10.78710 -10.71275 -10.43707 -10.34878 -10.25905 -10.09336 -9.84924 -9.73586 -9.65369 -9.21896 -8.97167 -8.53111 -8.45234 -8.17712 -6.67668 -5.68936 -3.14843 -0.01095 0.57912 1.60140 2.57679 3.11358 3.36329 3.42562 3.49433 3.51878 3.97687 4.09331 4.28635 4.49181 4.51482 4.54514 4.64157 4.73103 4.82280 4.97156 5.03603 5.14612 5.21131 5.33486 5.42493 5.48296 5.57507 5.62509 5.63093 5.67327 5.76284 5.82275 5.94052 5.98081 6.04219 6.09059 6.18923 6.23512 6.30490 6.45188 6.54310 6.58149 6.76216 6.84576 7.00625 7.07611 7.38893 7.73212 7.75225 7.86825 7.88425 8.45320 8.57174 9.28065 9.90763 10.40635 11.36663 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003081 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.034608 B = 9085.442934 C =10185.295942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.590 5.590 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.168 3.832 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.076 3.924 16 N -0.602 5.602 17 C 0.553 3.447 18 O -0.507 6.507 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.079 4.079 23 C -0.110 4.110 24 C -0.061 4.061 25 C -0.175 4.175 26 C 0.133 3.867 27 N -0.444 5.444 28 C 0.161 3.839 29 C 0.102 3.898 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.161 0.839 46 H 0.092 0.908 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -24.571 -1.442 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.312 5.312 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.046 4.046 16 N -0.336 5.336 17 C 0.340 3.660 18 O -0.381 6.381 19 C -0.097 4.097 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.098 4.098 23 C -0.112 4.112 24 C -0.087 4.087 25 C -0.195 4.195 26 C -0.040 4.040 27 N -0.150 5.150 28 C 0.038 3.962 29 C -0.021 4.021 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.307 -23.222 -0.780 25.030 hybrid contribution 0.757 0.141 -0.202 0.796 sum 10.064 -23.082 -0.982 25.199 Atomic orbital electron populations 1.20762 0.82783 0.96133 0.98765 1.43925 1.01736 1.00048 1.85443 1.19249 0.99436 0.85509 1.34386 0.91454 1.25052 0.98198 0.98629 0.97561 1.70075 1.21339 1.27387 1.35957 0.86198 0.78477 0.84396 0.77568 1.20302 1.21646 1.21690 1.20645 0.96500 0.86221 0.90741 0.91784 1.22077 0.99576 0.95020 1.00563 1.21908 1.01040 0.97286 0.96724 1.22611 1.01502 0.95231 0.85286 1.48163 1.48995 1.19283 1.17192 1.17905 0.79183 0.85044 0.83853 1.90832 1.61418 1.57257 1.28618 1.19988 0.94161 0.95606 0.99953 1.21900 1.01100 0.92187 0.95341 1.20858 0.95499 0.97177 1.00653 1.21113 0.95148 0.97907 0.95651 1.18813 0.96237 0.94993 1.01156 1.21444 0.93322 0.99316 0.94577 1.21958 1.01857 0.94589 1.01052 1.23166 0.89861 0.96496 0.94446 1.68223 1.09323 1.30909 1.06595 1.18595 0.93452 0.89169 0.95003 1.22519 0.96527 0.80658 1.02421 0.95625 0.93654 0.98175 0.93780 0.92276 0.91795 0.91344 0.91839 0.91275 0.88076 0.82925 0.84771 0.84980 0.84314 0.84427 0.82208 0.88964 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 7.95 59.85 0.48 4.43 16 2 N -0.59 -15.04 2.81 -173.35 -0.49 -15.52 16 3 C -0.26 -7.24 9.55 -15.06 -0.14 -7.39 16 4 H 0.07 1.89 7.85 -52.48 -0.41 1.48 16 5 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 6 N -0.90 -26.95 10.91 55.49 0.61 -26.35 16 7 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 C 0.17 3.58 2.74 -67.81 -0.19 3.40 16 12 H 0.06 1.47 7.88 -51.93 -0.41 1.06 16 13 C -0.13 -2.25 5.12 -26.69 -0.14 -2.39 16 14 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 15 C 0.08 0.95 4.97 -3.71 -0.02 0.93 16 16 N -0.60 -10.31 2.97 -174.03 -0.52 -10.82 16 17 C 0.55 10.30 7.29 -12.52 -0.09 10.21 16 18 O -0.51 -11.66 15.37 5.27 0.08 -11.57 16 19 C -0.09 -1.38 5.54 -104.61 -0.58 -1.96 16 20 C -0.09 -0.89 7.42 -39.16 -0.29 -1.18 16 21 C -0.12 -0.97 9.93 -40.03 -0.40 -1.37 16 22 C -0.08 -0.64 9.75 -39.43 -0.38 -1.03 16 23 C -0.11 -1.20 5.74 -106.83 -0.61 -1.82 16 24 C -0.06 -0.51 9.90 -39.19 -0.39 -0.90 16 25 C -0.17 -1.51 10.03 -39.80 -0.40 -1.91 16 26 C 0.13 1.59 11.15 -17.44 -0.19 1.39 16 27 N -0.44 -7.27 8.97 -10.76 -0.10 -7.37 16 28 C 0.16 2.39 6.58 -84.58 -0.56 1.84 16 29 C 0.10 2.10 5.78 -3.71 -0.02 2.08 16 30 H 0.03 0.69 7.54 -51.93 -0.39 0.29 16 31 H 0.04 1.20 7.22 -51.93 -0.37 0.83 16 32 H 0.00 0.00 6.45 -51.93 -0.34 -0.34 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.99 6.71 -51.93 -0.35 0.64 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.04 3.52 -52.93 -0.19 0.85 16 40 H 0.15 1.31 5.38 -52.49 -0.28 1.02 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.09 2.26 7.02 -51.93 -0.36 1.90 16 47 H 0.06 1.24 7.51 -51.93 -0.39 0.85 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -36.30 370.74 -10.47 -46.77 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.43 Total: -0.62 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -4.18 Total: 2.47 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.50 Total: -60.06 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.30 -10.47 -46.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.484 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds