Wall clock time and date at job start Sat Apr 11 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99661 * 2 1 4 4 H 1.08003 * 119.99824 * 204.57060 * 3 2 1 5 5 C 1.38814 * 120.00141 * 24.57448 * 3 2 1 6 6 N 1.31614 * 120.00018 * 14.27198 * 5 3 2 7 7 Si 1.86802 * 119.99931 * 194.27450 * 5 3 2 8 8 H 1.48499 * 109.46941 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46992 * 119.99869 * 7 5 3 10 10 H 1.48491 * 109.46965 * 240.00166 * 7 5 3 11 11 C 1.46493 * 120.00137 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.50005 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.50033 * 59.99871 * 11 2 1 14 14 C 1.53042 * 109.53728 * 178.68408 * 13 11 2 15 15 C 1.53192 * 109.31344 * 61.36865 * 14 13 11 16 16 N 1.46932 * 108.77308 * 305.35769 * 15 14 13 17 17 C 1.34770 * 120.63111 * 233.60967 * 16 15 14 18 18 O 1.21611 * 119.99509 * 183.50316 * 17 16 15 19 19 C 1.47428 * 120.00356 * 3.50579 * 17 16 15 20 20 C 1.38750 * 120.33228 * 325.47995 * 19 17 16 21 21 C 1.38864 * 120.72217 * 179.97438 * 20 19 17 22 22 C 1.36350 * 121.06247 * 359.97438 * 21 20 19 23 23 C 1.40435 * 120.08384 * 0.02811 * 22 21 20 24 24 C 1.40806 * 121.27068 * 179.97438 * 23 22 21 25 25 C 1.36628 * 118.15585 * 179.97438 * 24 23 22 26 26 C 1.39228 * 119.91322 * 0.02562 * 25 24 23 27 27 N 1.31227 * 121.69280 * 0.02562 * 26 25 24 28 28 C 1.33350 * 121.35027 * 359.65441 * 27 26 25 29 29 C 1.46927 * 118.73307 * 53.61386 * 16 15 14 30 30 H 1.09001 * 109.46900 * 271.17973 * 1 2 3 31 31 H 1.08996 * 109.47251 * 31.18298 * 1 2 3 32 32 H 1.09000 * 109.47095 * 151.18516 * 1 2 3 33 33 H 0.97002 * 120.00181 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.45497 * 298.70482 * 13 11 2 35 35 H 1.08995 * 109.46000 * 58.66272 * 13 11 2 36 36 H 1.09005 * 109.49515 * 181.31413 * 14 13 11 37 37 H 1.08995 * 109.49691 * 301.37945 * 14 13 11 38 38 H 1.08994 * 109.59212 * 65.14841 * 15 14 13 39 39 H 1.09003 * 109.58429 * 185.43866 * 15 14 13 40 40 H 1.07999 * 119.63660 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.46954 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.95545 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.92115 * 359.97438 * 24 23 22 44 44 H 1.08007 * 120.04065 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.15382 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.58522 * 186.60329 * 29 16 15 47 47 H 1.08995 * 109.59167 * 66.17912 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1563 1.2284 -0.3889 5 6 1.5498 2.3337 0.4999 6 7 0.4534 2.2420 1.2222 7 14 2.2988 4.0083 0.1475 8 1 3.5203 3.8399 -0.6800 9 1 1.3156 4.8461 -0.5850 10 1 2.6564 4.6699 1.4279 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6177 -3.3822 -1.2684 15 6 2.2497 -4.2123 -0.0346 16 7 2.4655 -3.3946 1.1670 17 6 3.2362 -3.8467 2.1759 18 8 3.3557 -3.1887 3.1916 19 6 3.9346 -5.1388 2.0482 20 6 3.3479 -6.1868 1.3535 21 6 3.9986 -7.4070 1.2278 22 6 5.2284 -7.6088 1.7810 23 6 5.8584 -6.5749 2.4927 24 6 7.1277 -6.7561 3.0746 25 6 7.6819 -5.7072 3.7524 26 6 6.9913 -4.5024 3.8520 27 7 5.8080 -4.3389 3.3087 28 6 5.2152 -5.3210 2.6287 29 6 1.8248 -2.0748 1.2477 30 1 -0.3633 0.0212 1.0275 31 1 -0.3633 0.8791 -0.5321 32 1 -0.3633 -0.9004 -0.4953 33 1 0.0340 3.0440 1.5712 34 1 0.7605 -2.2903 -1.2387 35 1 2.0698 -1.4896 -2.1398 36 1 2.3716 -3.9426 -2.1704 37 1 3.6855 -3.1640 -1.2555 38 1 1.2022 -4.5079 -0.0921 39 1 2.8786 -5.1016 0.0084 40 1 2.3744 -6.0519 0.9056 41 1 3.5234 -8.2089 0.6822 42 1 5.7185 -8.5650 1.6719 43 1 7.6487 -7.6981 2.9876 44 1 8.6544 -5.8126 4.2103 45 1 7.4411 -3.6812 4.3903 46 1 2.1750 -1.5525 2.1379 47 1 0.7427 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:56 Heat of formation + Delta-G solvation = 51.487548 kcal Electronic energy + Delta-G solvation = -29604.096091 eV Core-core repulsion = 25752.560988 eV Total energy + Delta-G solvation = -3851.535104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.15631 -40.88346 -38.83649 -38.04026 -36.75115 -34.58181 -33.91468 -32.85059 -31.79658 -31.39465 -30.07078 -28.06968 -26.97217 -25.53204 -25.25683 -24.44158 -23.74177 -23.03034 -21.15063 -20.15406 -19.51263 -18.86424 -18.16154 -17.87162 -17.41006 -17.01856 -16.62407 -16.22156 -15.94298 -15.60798 -15.40289 -15.22191 -15.14889 -14.90629 -14.73911 -14.43810 -14.25459 -13.98008 -13.85125 -13.80752 -13.47572 -13.14758 -12.97013 -12.85103 -12.70114 -12.49676 -12.34340 -12.21842 -12.13620 -12.03177 -11.75530 -11.59943 -11.43843 -11.40901 -10.90877 -10.67824 -10.22218 -9.75672 -9.70599 -9.23307 -8.77252 -7.89037 -5.38079 -0.78265 -0.17432 0.78715 1.40717 1.42258 1.53255 1.73510 1.88881 2.16595 2.47233 3.12499 3.24468 3.30112 3.42520 3.59366 3.77423 3.81485 3.93101 3.96810 4.04778 4.06249 4.10001 4.17343 4.23475 4.33411 4.43356 4.50549 4.57200 4.64349 4.71121 4.75624 4.85184 4.91895 4.93145 4.98928 5.02337 5.09664 5.13481 5.21521 5.23599 5.37450 5.38723 5.48030 5.53065 5.58076 5.61153 5.65496 5.86074 6.29257 6.44192 7.05906 7.10196 7.21211 7.81498 8.25248 9.14488 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003081 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.034608 B = 9085.442934 C =10185.295942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.607 5.607 3 C -0.270 4.270 4 H 0.062 0.938 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.268 1.268 9 H -0.283 1.283 10 H -0.294 1.294 11 C 0.168 3.832 12 H 0.034 0.966 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.071 3.929 16 N -0.602 5.602 17 C 0.546 3.454 18 O -0.574 6.574 19 C -0.145 4.145 20 C -0.063 4.063 21 C -0.123 4.123 22 C -0.057 4.057 23 C -0.127 4.127 24 C -0.046 4.046 25 C -0.177 4.177 26 C 0.116 3.884 27 N -0.519 5.519 28 C 0.128 3.872 29 C 0.119 3.881 30 H -0.005 1.005 31 H 0.021 0.979 32 H 0.040 0.960 33 H 0.250 0.750 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.173 0.827 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.188 0.812 44 H 0.175 0.825 45 H 0.164 0.836 46 H 0.035 0.965 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -29.875 -4.077 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.329 5.329 3 C -0.400 4.400 4 H 0.080 0.920 5 C -0.246 4.246 6 N -0.580 5.580 7 Si 0.798 3.202 8 H -0.192 1.192 9 H -0.209 1.209 10 H -0.221 1.221 11 C 0.060 3.940 12 H 0.052 0.948 13 C -0.160 4.160 14 C -0.161 4.161 15 C -0.049 4.049 16 N -0.335 5.335 17 C 0.336 3.664 18 O -0.454 6.454 19 C -0.149 4.149 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.075 4.075 23 C -0.129 4.129 24 C -0.072 4.072 25 C -0.196 4.196 26 C -0.055 4.055 27 N -0.227 5.227 28 C 0.006 3.994 29 C -0.006 4.006 30 H 0.013 0.987 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.190 0.810 41 H 0.200 0.800 42 H 0.197 0.803 43 H 0.205 0.795 44 H 0.193 0.807 45 H 0.181 0.819 46 H 0.054 0.946 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.614 -28.586 -3.468 30.689 hybrid contribution 0.458 1.641 0.657 1.826 sum 11.072 -26.945 -2.811 29.266 Atomic orbital electron populations 1.20500 0.82419 0.96814 0.96977 1.44153 1.02215 1.00840 1.85729 1.19532 0.99472 0.87085 1.33959 0.92007 1.25847 0.98928 1.02123 0.97665 1.70237 1.22699 1.27989 1.37123 0.85170 0.78073 0.79850 0.77155 1.19209 1.20903 1.22098 1.20772 0.94399 0.85503 0.93355 0.94792 1.21909 1.00825 0.96212 0.97041 1.21904 0.99581 0.95551 0.99028 1.23056 1.03983 0.95288 0.82587 1.48205 1.48401 1.18104 1.18789 1.18723 0.78440 0.86313 0.82909 1.90770 1.63541 1.59758 1.31304 1.19780 0.95391 0.94830 1.04857 1.22207 1.01385 0.91874 0.92834 1.21360 0.95388 0.96850 1.00446 1.21714 0.94811 0.98437 0.92535 1.19187 0.97427 0.94165 1.02151 1.22029 0.92168 1.00731 0.92236 1.22266 1.02979 0.93236 1.01138 1.23526 0.89331 0.98528 0.94118 1.68116 1.11678 1.33504 1.09413 1.18945 0.94015 0.90779 0.95679 1.21944 0.96421 0.82647 0.99623 0.98695 0.96036 0.94173 0.94125 0.91151 0.92392 0.86604 0.93081 0.88362 0.85070 0.80972 0.80022 0.80253 0.79495 0.80739 0.81853 0.94583 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 7.95 127.77 1.02 10.12 16 2 N -0.61 -32.54 2.81 -702.35 -1.97 -34.51 16 3 C -0.27 -16.07 9.55 84.03 0.80 -15.27 16 4 H 0.06 3.65 7.85 -2.91 -0.02 3.63 16 5 C -0.05 -2.99 5.04 84.86 0.43 -2.56 16 6 N -0.93 -58.56 10.91 21.65 0.24 -58.32 16 7 Si 0.97 47.93 29.58 68.60 2.03 49.96 16 8 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 11 C 0.17 7.52 2.74 45.07 0.12 7.64 16 12 H 0.03 1.69 7.88 -2.39 -0.02 1.67 16 13 C -0.12 -3.97 5.12 30.62 0.16 -3.81 16 14 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 15 C 0.07 1.59 4.97 86.36 0.43 2.02 16 16 N -0.60 -21.46 2.97 -822.77 -2.45 -23.90 16 17 C 0.55 21.95 7.29 86.67 0.63 22.58 16 18 O -0.57 -29.71 15.37 -4.07 -0.06 -29.77 16 19 C -0.14 -4.37 5.54 -19.86 -0.11 -4.48 16 20 C -0.06 -1.12 7.42 22.54 0.17 -0.96 16 21 C -0.12 -1.23 9.93 21.98 0.22 -1.01 16 22 C -0.06 -0.60 9.75 22.36 0.22 -0.38 16 23 C -0.13 -2.44 5.74 -21.29 -0.12 -2.56 16 24 C -0.05 -0.61 9.90 22.52 0.22 -0.39 16 25 C -0.18 -2.76 10.03 22.13 0.22 -2.54 16 26 C 0.12 2.97 11.15 85.02 0.95 3.92 16 27 N -0.52 -18.57 8.97 -187.97 -1.69 -20.26 16 28 C 0.13 3.92 6.58 40.61 0.27 4.19 16 29 C 0.12 5.27 5.78 86.36 0.50 5.77 16 30 H -0.01 -0.30 7.54 -2.39 -0.02 -0.32 16 31 H 0.02 1.16 7.22 -2.39 -0.02 1.15 16 32 H 0.04 1.70 6.45 -2.39 -0.02 1.68 16 33 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.17 6.71 -2.39 -0.02 2.16 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.13 2.20 3.52 -3.33 -0.01 2.19 16 40 H 0.17 2.21 5.38 -2.91 -0.02 2.19 16 41 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 42 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 46 H 0.04 1.98 7.02 -2.39 -0.02 1.96 16 47 H 0.06 2.71 7.51 -2.39 -0.02 2.70 16 Total: -1.00 -93.50 370.74 3.39 -90.11 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.98 Total: 7.09 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.30 Total: 19.60 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -5.87 Total: -137.00 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.06 Total: -29.77 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -93.50 3.39 -90.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.600 kcal (2) G-P(sol) polarization free energy of solvation -93.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds